FFCP PHASE1:Mm9::chr17:27069988..27070005,+: Difference between revisions
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{{FFCP|EntrezGene=21652|HGNC=|MCL_coexpression_id=0|UniProt=Q9Z1B8|association_with_transcript=-66bp_to_ENSMUST00000073724,NM_009343,uc008bes.1,uc008bet.1,uc008beu.1,uc008bev.1,uc012ant.1_5end|description=CAGE_peak_3_at_Phf1_5end|id=chr17:27069988..27070005,+|ontology_enrichment_celltype=CL:0000117!4.71e-23!23;CL:0000337!4.71e-23!23;CL:0000540!1.17e-17!33;CL:0000047!1.17e-17!33;CL:0000031!1.17e-17!33;CL:0000404!1.17e-17!33;CL:0002319!8.95e-16!43;CL:0000221!3.56e-15!44;CL:0000133!3.56e-15!44;CL:0000393!1.10e-14!39;CL:0000211!1.10e-14!39;CL:0000055!3.95e-13!50;CL:0002321!5.66e-08!70;CL:0000220!5.66e-08!70;CL:0002609!3.15e-07!6|ontology_enrichment_celltype_v019_2=CL:0000117,3.43e-35,23;CL:0000337,3.43e-35,23;CL:0000540,7.04e-24,33;CL:0000047,7.04e-24,33;CL:0000031,7.04e-24,33;CL:0000404,7.04e-24,33;CL:0000393,7.21e-20,39;CL:0000211,7.21e-20,39;CL:0002319,8.17e-18,43;CL:0000221,2.33e-17,44;CL:0000133,2.33e-17,44;CL:0000120,3.65e-14,3;CL:0002613,4.96e-14,3;CL:0002321,4.56e-10,70;CL:0000723,3.30e-07,91;CL:0000048,3.30e-07,91;CL:0002609,4.13e-07,6;CL:0002610,8.98e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.35e-15!75;UBERON:0001016!2.35e-15!75;UBERON:0001017!3.21e-15!73;UBERON:0005743!3.21e-15!73;UBERON:0001049!4.39e-13!52;UBERON:0005068!4.39e-13!52;UBERON:0006241!4.39e-13!52;UBERON:0007135!4.39e-13!52;UBERON:0002616!2.58e-11!49;UBERON:0000955!6.74e-11!50;UBERON:0006238!6.74e-11!50;UBERON:0002020!1.20e-10!34;UBERON:0004121!1.48e-10!102;UBERON:0000924!1.48e-10!102;UBERON:0006601!1.48e-10!102;UBERON:0003076!1.83e-10!12;UBERON:0003057!1.83e-10!12;UBERON:0000033!3.02e-10!63;UBERON:0002346!3.64e-10!71;UBERON:0003075!3.64e-10!71;UBERON:0007284!3.64e-10!71;UBERON:0002791!1.90e-07!29;UBERON:0003528!1.90e-07!29;UBERON:0001893!1.90e-07!29;UBERON:0002420!4.87e-07!8;UBERON:0007245!4.87e-07!8;UBERON:0010009!4.87e-07!8;UBERON:0010011!4.87e-07!8;UBERON:0000454!4.87e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.47e-09,73;UBERON:0001016,3.05e-09,75;UBERON:0002020,3.72e-09,34;UBERON:0002420,4.94e-09,8;UBERON:0007245,4.94e-09,8;UBERON:0010009,4.94e-09,8;UBERON:0010011,4.94e-09,8;UBERON:0000454,4.94e-09,8;UBERON:0000369,1.27e-08,5;UBERON:0002435,1.27e-08,5;UBERON:0000204,1.27e-08,5;UBERON:0010082,1.27e-08,5;UBERON:0000073,4.34e-08,54;UBERON:0004121,8.33e-07,95;UBERON:0000924,8.33e-07,95;UBERON:0006601,8.33e-07,95;UBERON:0004684,8.98e-07,3;UBERON:0002275,8.98e-07,3|phase1_expression=0.480446541314382,0.348975407639361,0,0.30246421130683,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,9.18467533631554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0,1.41621522601718,1.5869729378161,1.90149421051854,0.338844532069132,0,0,0,0.7104801149461,0,0,1.55534418462716,1.08004750665353,1.47227472945967,1.14260393761521,0.883474163806454,0.489963196859816,0.862609239164127,0.919218786610021,2.20231761998777,1.0214987046815,0.307213066512487,1.97829431595291,1.9212405156506,1.04182674111352,0.837548997004143,1.12552522006336,0.763991238884051,0.294628585473668,0.142371680799103,1.3047961207771,0,0.226714680320357,0,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0,0,0,1.37020655662872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.83778682725382,0,0,0,0,0.149790639404823,0,0.879580464790051,0,0,0.62336413367868,0.486723789203273,0,0,0,0,0.130120442962704,0,0,0.150704817835715,0.204109497453984,0.2562274405697,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0,0.617427674275707,0,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0.221464689648775,0,0,0.172684981865896,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0,0,0,0,0,0,0,0,33.8215763210514,0,0,0.194451188344048,0,0,0,0.13020438484395,0.104859344425711,15.4613837328644,20.1621004380506,0,0.202725215290164,0,0,0,0,0,0.147689527174577,0,0,0,0,0.192423683280659,0,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,0.564751842617067,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0.103787347584177,0,0.341467211508268,0.243106717068294,0,0,0.44449345560323,0.412070114477788,0.320919209591815,0,0,0,0,0.256100609619477,0.114870937911227,0,0,0,0,0.147198920134397,0,0.354951612318675,0,0,0,0.25384382367503,0.182927972872773,0,0.271608227691724,0,0,0,0,0,0.192906610981141,0.499621155875892,0,0,0,0,0|short_description=p3@Phf1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=21652 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z1B8 | |||
|association_with_transcript=-66bp_to_ENSMUST00000073724,NM_009343,uc008bes.1,uc008bet.1,uc008beu.1,uc008bev.1,uc012ant.1_5end | |||
|cluster_id=chr17:27069988..27070005,+ | |||
|description=CAGE_peak_3_at_Phf1_5end | |||
|id=chr17:27069988..27070005,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.71e-23!23;CL:0000337!4.71e-23!23;CL:0000540!1.17e-17!33;CL:0000047!1.17e-17!33;CL:0000031!1.17e-17!33;CL:0000404!1.17e-17!33;CL:0002319!8.95e-16!43;CL:0000221!3.56e-15!44;CL:0000133!3.56e-15!44;CL:0000393!1.10e-14!39;CL:0000211!1.10e-14!39;CL:0000055!3.95e-13!50;CL:0002321!5.66e-08!70;CL:0000220!5.66e-08!70;CL:0002609!3.15e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.43e-35,23;CL:0000337,3.43e-35,23;CL:0000540,7.04e-24,33;CL:0000047,7.04e-24,33;CL:0000031,7.04e-24,33;CL:0000404,7.04e-24,33;CL:0000393,7.21e-20,39;CL:0000211,7.21e-20,39;CL:0002319,8.17e-18,43;CL:0000221,2.33e-17,44;CL:0000133,2.33e-17,44;CL:0000120,3.65e-14,3;CL:0002613,4.96e-14,3;CL:0002321,4.56e-10,70;CL:0000723,3.30e-07,91;CL:0000048,3.30e-07,91;CL:0002609,4.13e-07,6;CL:0002610,8.98e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.35e-15!75;UBERON:0001016!2.35e-15!75;UBERON:0001017!3.21e-15!73;UBERON:0005743!3.21e-15!73;UBERON:0001049!4.39e-13!52;UBERON:0005068!4.39e-13!52;UBERON:0006241!4.39e-13!52;UBERON:0007135!4.39e-13!52;UBERON:0002616!2.58e-11!49;UBERON:0000955!6.74e-11!50;UBERON:0006238!6.74e-11!50;UBERON:0002020!1.20e-10!34;UBERON:0004121!1.48e-10!102;UBERON:0000924!1.48e-10!102;UBERON:0006601!1.48e-10!102;UBERON:0003076!1.83e-10!12;UBERON:0003057!1.83e-10!12;UBERON:0000033!3.02e-10!63;UBERON:0002346!3.64e-10!71;UBERON:0003075!3.64e-10!71;UBERON:0007284!3.64e-10!71;UBERON:0002791!1.90e-07!29;UBERON:0003528!1.90e-07!29;UBERON:0001893!1.90e-07!29;UBERON:0002420!4.87e-07!8;UBERON:0007245!4.87e-07!8;UBERON:0010009!4.87e-07!8;UBERON:0010011!4.87e-07!8;UBERON:0000454!4.87e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.47e-09,73;UBERON:0001016,3.05e-09,75;UBERON:0002020,3.72e-09,34;UBERON:0002420,4.94e-09,8;UBERON:0007245,4.94e-09,8;UBERON:0010009,4.94e-09,8;UBERON:0010011,4.94e-09,8;UBERON:0000454,4.94e-09,8;UBERON:0000369,1.27e-08,5;UBERON:0002435,1.27e-08,5;UBERON:0000204,1.27e-08,5;UBERON:0010082,1.27e-08,5;UBERON:0000073,4.34e-08,54;UBERON:0004121,8.33e-07,95;UBERON:0000924,8.33e-07,95;UBERON:0006601,8.33e-07,95;UBERON:0004684,8.98e-07,3;UBERON:0002275,8.98e-07,3 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0,0.30246421130683,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,9.18467533631554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0.257259436035947,0,0,1.41621522601718,1.5869729378161,1.90149421051854,0.338844532069132,0,0,0,0.7104801149461,0,0,1.55534418462716,1.08004750665353,1.47227472945967,1.14260393761521,0.883474163806454,0.489963196859816,0.862609239164127,0.919218786610021,2.20231761998777,1.0214987046815,0.307213066512487,1.97829431595291,1.9212405156506,1.04182674111352,0.837548997004143,1.12552522006336,0.763991238884051,0.294628585473668,0.142371680799103,1.3047961207771,0,0.226714680320357,0,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0,0,0,1.37020655662872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.83778682725382,0,0,0,0,0.149790639404823,0,0.879580464790051,0,0,0.62336413367868,0.486723789203273,0,0,0,0,0.130120442962704,0,0,0.150704817835715,0.204109497453984,0.2562274405697,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0,0.617427674275707,0,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0.221464689648775,0,0,0.172684981865896,0,0,0,0,0,0.321101179975584,0.468846746368813,0,0,0.315508219416257,0,0,0,0.222798674082394,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0,0.0603129249281559,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0,0,0,0,0,0,0,0,33.8215763210514,0,0,0.194451188344048,0,0,0,0.13020438484395,0.104859344425711,15.4613837328644,20.1621004380506,0,0.202725215290164,0,0,0,0,0,0.147689527174577,0,0,0,0,0.192423683280659,0,0,0,0,0,0.19318959403219,0.187682475451182,0,0,0,0.564751842617067,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0.103787347584177,0,0.341467211508268,0.243106717068294,0,0,0.44449345560323,0.412070114477788,0.320919209591815,0,0,0,0,0.256100609619477,0.114870937911227,0,0,0,0,0.147198920134397,0,0.354951612318675,0,0,0,0.25384382367503,0.182927972872773,0,0.271608227691724,0,0,0,0,0,0.192906610981141,0.499621155875892,0,0,0,0,0 | |||
|short_description=p3@Phf1 | |||
}} |
Latest revision as of 03:13, 26 September 2015
Short description: | p3@Phf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Phf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -66bp_to_ENSMUST00000073724, NM_009343, uc008bes.1, uc008bet.1, uc008beu.1, uc008bev.1, uc012ant.1_5end |
EntrezGene: | Phf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.43e-35 | 23 |
neuroblast (sensu Vertebrata) | 3.43e-35 | 23 |
neuron | 7.04e-24 | 33 |
neuronal stem cell | 7.04e-24 | 33 |
neuroblast | 7.04e-24 | 33 |
electrically signaling cell | 7.04e-24 | 33 |
electrically responsive cell | 7.21e-20 | 39 |
electrically active cell | 7.21e-20 | 39 |
neural cell | 8.17e-18 | 43 |
ectodermal cell | 2.33e-17 | 44 |
neurectodermal cell | 2.33e-17 | 44 |
granule cell | 3.65e-14 | 3 |
striatum neuron | 4.96e-14 | 3 |
embryonic cell | 4.56e-10 | 70 |
somatic stem cell | 3.30e-07 | 91 |
multi fate stem cell | 3.30e-07 | 91 |
neuron of cerebral cortex | 4.13e-07 | 6 |
raphe nuclei neuron | 8.98e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.47e-09 | 73 |
nervous system | 3.05e-09 | 75 |
gray matter | 3.72e-09 | 34 |
basal ganglion | 4.94e-09 | 8 |
nuclear complex of neuraxis | 4.94e-09 | 8 |
aggregate regional part of brain | 4.94e-09 | 8 |
collection of basal ganglia | 4.94e-09 | 8 |
cerebral subcortex | 4.94e-09 | 8 |
corpus striatum | 1.27e-08 | 5 |
striatum | 1.27e-08 | 5 |
ventral part of telencephalon | 1.27e-08 | 5 |
future corpus striatum | 1.27e-08 | 5 |
regional part of nervous system | 4.34e-08 | 54 |
ectoderm-derived structure | 8.33e-07 | 95 |
ectoderm | 8.33e-07 | 95 |
presumptive ectoderm | 8.33e-07 | 95 |
raphe nuclei | 8.98e-07 | 3 |
reticular formation | 8.98e-07 | 3 |