FFCP PHASE1:Hg19::chr6:102297713..102297717,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr6:102297713..102297717,+ | |||
|coexpression_cluster_id=C705 | |||
|description=CAGE_peak_at_chr6:102297713..102297717,+ | |||
|id=chr6:102297713..102297717,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.52e-44;3!UBERON:0005425;5.05e-34;1!UBERON:0003056;2.59e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;1.72e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.90e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0001869!4.17e-22!32;UBERON:0002791!2.38e-21!33;UBERON:0001049!3.13e-21!57;UBERON:0005068!3.13e-21!57;UBERON:0006241!3.13e-21!57;UBERON:0007135!3.13e-21!57;UBERON:0002619!7.83e-21!22;UBERON:0002020!1.23e-20!34;UBERON:0003528!1.23e-20!34;UBERON:0001893!1.23e-20!34;UBERON:0002780!5.13e-19!41;UBERON:0001890!5.13e-19!41;UBERON:0006240!5.13e-19!41;UBERON:0003080!1.75e-18!42;UBERON:0000955!3.14e-18!69;UBERON:0006238!3.14e-18!69;UBERON:0002616!3.91e-18!59;UBERON:0000956!4.05e-18!25;UBERON:0000203!4.05e-18!25;UBERON:0002346!7.00e-18!90;UBERON:0003075!2.78e-17!86;UBERON:0007284!2.78e-17!86;UBERON:0001017!2.74e-16!82;UBERON:0001950!1.19e-15!20;UBERON:0005743!2.67e-15!86;UBERON:0000073!6.30e-15!94;UBERON:0001016!6.30e-15!94;UBERON:0003056!2.67e-13!61;UBERON:0007023!1.70e-10!115;UBERON:0000033!3.34e-10!123;UBERON:0000924!6.21e-10!173;UBERON:0006601!6.21e-10!173;UBERON:0000153!1.72e-09!129;UBERON:0007811!1.72e-09!129;UBERON:0004121!2.09e-09!169;UBERON:0001954!4.90e-09!2;UBERON:0003022!4.90e-09!2;UBERON:0002421!4.90e-09!2;UBERON:0002600!4.90e-09!2;UBERON:0002133!9.44e-09!2;UBERON:0002021!1.16e-07!5;UBERON:0000349!1.29e-07!5;UBERON:0002420!5.63e-07!9;UBERON:0007245!5.63e-07!9;UBERON:0010009!5.63e-07!9;UBERON:0010011!5.63e-07!9;UBERON:0000454!5.63e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;5.05e-34;1!UBERON:0001785;5.05e-34;1!UBERON:0002464;5.05e-34;1!UBERON:0004904;5.05e-34;1!UBERON:0001021;5.05e-34;1!UBERON:0004732;1.75e-23;13!UBERON:0002037;6.78e-23;6!UBERON:0001954;9.07e-18;2!UBERON:0003714;9.07e-18;2!UBERON:0005162;9.07e-18;2!UBERON:0000122;9.07e-18;2!UBERON:0003022;9.07e-18;2!UBERON:0002421;9.07e-18;2!UBERON:0002600;9.07e-18;2!UBERON:0002680;1.22e-15;9!UBERON:0001895;1.22e-15;9!UBERON:0004733;5.37e-12;12!UBERON:0002028;5.37e-12;12!UBERON:0000349;6.55e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,7.06e-34,1;UBERON:0001785,7.06e-34,1;UBERON:0002464,7.06e-34,1;UBERON:0004904,7.06e-34,1;UBERON:0001021,7.06e-34,1;UBERON:0003902,7.06e-34,1;UBERON:0005425,7.06e-34,1;UBERON:0004732,1.75e-23,13;UBERON:0002037,6.07e-23,6;UBERON:0006215,6.07e-23,6;UBERON:0001954,6.48e-18,2;UBERON:0003022,6.48e-18,2;UBERON:0002421,6.48e-18,2;UBERON:0002600,6.48e-18,2;UBERON:0003714,1.07e-17,2;UBERON:0005162,1.07e-17,2;UBERON:0000122,1.07e-17,2;UBERON:0002680,1.13e-15,9;UBERON:0001895,1.13e-15,9;UBERON:0010092,1.13e-15,9;UBERON:0004733,5.08e-12,12;UBERON:0002028,5.08e-12,12;UBERON:0007277,5.08e-12,12;UBERON:0003076,8.10e-10,15;UBERON:0003057,8.10e-10,15;UBERON:0001781,1.57e-09,4;UBERON:0000349,5.73e-08,5;UBERON:0003075,6.53e-07,82;UBERON:0007284,6.53e-07,82;UBERON:0000966,8.97e-07,6;UBERON:0005388,8.97e-07,6;UBERON:0001802,8.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0.251932747854276,0.102268682502155,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03423011972439,0,0,0,0.361789315876224,1.52581736317083,1.54810963903714,0.886642856860642,0,0,0.139423744278603,0,0.227884111694002,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0.114536596165916,0.343189995723929,0,0,0,0,0,0,0.577901179803038,0.600420288709789,0,0,0.429765441419957,0,0.279282401272254,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,1.59045937961861,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0.106691729694141,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0.319267718114302,0.615349092722265,0.756215088665154,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0.314231179832004,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,4.57586782871147,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0.872701380680755,0,0,0,0,0,0,0.126698501011437,0,0,0.275684698604535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:102297713..102297717,+ | |||
}} |
Latest revision as of 17:46, 30 July 2015
Short description: | p@chr6:102297713..102297717, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:102297713..102297717, + |
Coexpression cluster: | C705_small_cerebellum_parietal_occipital_temporal_amygdala_olfactory |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 7.06e-34 | 1 |
cranial nerve | 7.06e-34 | 1 |
nerve trunk | 7.06e-34 | 1 |
nerve connecting eye with brain | 7.06e-34 | 1 |
nerve | 7.06e-34 | 1 |
retinal neural layer | 7.06e-34 | 1 |
presumptive neural retina | 7.06e-34 | 1 |
segmental subdivision of nervous system | 1.75e-23 | 13 |
cerebellum | 6.07e-23 | 6 |
rhombic lip | 6.07e-23 | 6 |
Ammon's horn | 6.48e-18 | 2 |
lobe parts of cerebral cortex | 6.48e-18 | 2 |
hippocampal formation | 6.48e-18 | 2 |
limbic lobe | 6.48e-18 | 2 |
neural tissue | 1.07e-17 | 2 |
multi cell component structure | 1.07e-17 | 2 |
neuron projection bundle | 1.07e-17 | 2 |
regional part of metencephalon | 1.13e-15 | 9 |
metencephalon | 1.13e-15 | 9 |
future metencephalon | 1.13e-15 | 9 |
segmental subdivision of hindbrain | 5.08e-12 | 12 |
hindbrain | 5.08e-12 | 12 |
presumptive hindbrain | 5.08e-12 | 12 |
posterior neural tube | 8.10e-10 | 15 |
chordal neural plate | 8.10e-10 | 15 |
layer of retina | 1.57e-09 | 4 |
limbic system | 5.73e-08 | 5 |
neural plate | 6.53e-07 | 82 |
presumptive neural plate | 6.53e-07 | 82 |
retina | 8.97e-07 | 6 |
photoreceptor array | 8.97e-07 | 6 |
posterior segment of eyeball | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.90e-10 | 14 |