FFCP PHASE1:Mm9::chr19:55993992..55994008,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=141|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:55993992..55994008,+|id=chr19:55993992..55994008,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,8.09e-28,23;CL:0000337,8.09e-28,23;CL:0002613,1.46e-25,3;CL:0000120,1.63e-24,3;CL:0002610,1.96e-24,3;CL:0000540,3.04e-19,33;CL:0000047,3.04e-19,33;CL:0000031,3.04e-19,33;CL:0000404,3.04e-19,33;CL:0000393,3.36e-16,39;CL:0000211,3.36e-16,39;CL:0002319,1.22e-14,43;CL:0000221,2.71e-14,44;CL:0000133,2.71e-14,44;CL:0002321,9.73e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.96e-24,3;UBERON:0002275,1.96e-24,3;UBERON:0000369,1.27e-15,5;UBERON:0002435,1.27e-15,5;UBERON:0000204,1.27e-15,5;UBERON:0010082,1.27e-15,5;UBERON:0001017,2.39e-10,73;UBERON:0001016,4.73e-10,75;UBERON:0002420,5.42e-10,8;UBERON:0007245,5.42e-10,8;UBERON:0010009,5.42e-10,8;UBERON:0010011,5.42e-10,8;UBERON:0000454,5.42e-10,8;UBERON:0000998,6.33e-09,1;UBERON:0007194,6.33e-09,1;UBERON:0006868,6.33e-09,1;UBERON:0004121,9.14e-08,95;UBERON:0000924,9.14e-08,95;UBERON:0006601,9.14e-08,95;UBERON:0000073,5.88e-07,54|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,1.41621522601718,2.64495489636016,1.26766280701236,0,0,0.899899717281399,0,0.7104801149461,0.599200221036809,0.768436610643109,0.103689612308478,0.135005938331691,0,0,0.220868540951614,0,0,0,1.10115880999389,2.29837208553338,2.30409799884365,4.74790635828698,7.41049913179518,7.8137005583514,0,0,0.30559649555362,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0.216491041011214,0,0,0.11418387971906,0,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0.117588707135705,0,0,0.144599356919912,0,0.323533699894818,0,0.484875253135222,0,0.292780797011547,0,0.766371165625774,0,0,0,0.898743836428936,0,0.125654352112864,0,0,1.0389402227978,0.324482526135515,0.305518091550949,0,0.505445516867349,0,0.130120442962704,0,0.180062129805349,0,0,0,0,0.258703370739016,0.215567992932842,0,0.175951124163949,0.219195732427575,0.278047249225598,0,0.61734640922383,0,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.462801338662135,0,0.268273401399619,0.116765342367169,0.493679549740441,0,0.162137619091711,0.146199987425332,0,0,0,0.102904612379284,0.660837565967596,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0,0.251335208800269,0,0.19496408711912,0.898819408654221,0.432276099749388,0.597423819763102,0.189667900953082,0.456994050438915,0,0.203651327845314,0.387904974335251,0.140271639780637,0.126473074248515,0.442830443938806,0.156998727841375,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0.757736633841335,0.179397413521912,0,0,0.189491411770485,0.488894929326078,0.169745085775188,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0,0.221464689648775,0.318909537314974,0,0,0.144649058581512,0,0,0.983528546038072,0.551873492609465,0.321101179975584,0,0.163934945376675,0,0,0,0,0,0,0,0,0.292255857911312,0,0.642642632843614,0.141940085208269,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.258717367565509,0.214337035031592,0.354680467284547,0,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0.119372344003136,0,0,0,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0,0,0,0.954670618015114,0.474503990371703,0.203319467126849,0,0.209088296014469,0.218362563746178,0,0.165306911450672,0,0.388844919875379,0,0,0,0,0,0,0.168956125490778,0.234714477291508,0.2604087696879,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0.221985953374065,0,0,0.19318959403219,0.187682475451182,0,0,1.00314420807073,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0,0,0.243106717068294,0,0,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0,0.561849044819294,0.128050304809739,0.229741875822453,0.476293691283074,0,0,0,0.294397840268795,0,0,0.238436189947321,0.145346416632329,0.188218760830661,0.0846146078916765,0,0,0.407412341537585,0,0.355905054372522,0.0985044823755635,0,0.309873682371932,0,0,0,0,0,0.220591419119515,0|short_description=p@chr19:55993992..55994008,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr19:55993992..55994008,+ | |||
|description=CAGE_peak_at_chr19:55993992..55994008,+ | |||
|id=chr19:55993992..55994008,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.09e-28,23;CL:0000337,8.09e-28,23;CL:0002613,1.46e-25,3;CL:0000120,1.63e-24,3;CL:0002610,1.96e-24,3;CL:0000540,3.04e-19,33;CL:0000047,3.04e-19,33;CL:0000031,3.04e-19,33;CL:0000404,3.04e-19,33;CL:0000393,3.36e-16,39;CL:0000211,3.36e-16,39;CL:0002319,1.22e-14,43;CL:0000221,2.71e-14,44;CL:0000133,2.71e-14,44;CL:0002321,9.73e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004684,1.96e-24,3;UBERON:0002275,1.96e-24,3;UBERON:0000369,1.27e-15,5;UBERON:0002435,1.27e-15,5;UBERON:0000204,1.27e-15,5;UBERON:0010082,1.27e-15,5;UBERON:0001017,2.39e-10,73;UBERON:0001016,4.73e-10,75;UBERON:0002420,5.42e-10,8;UBERON:0007245,5.42e-10,8;UBERON:0010009,5.42e-10,8;UBERON:0010011,5.42e-10,8;UBERON:0000454,5.42e-10,8;UBERON:0000998,6.33e-09,1;UBERON:0007194,6.33e-09,1;UBERON:0006868,6.33e-09,1;UBERON:0004121,9.14e-08,95;UBERON:0000924,9.14e-08,95;UBERON:0006601,9.14e-08,95;UBERON:0000073,5.88e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0.183546752161682,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,1.41621522601718,2.64495489636016,1.26766280701236,0,0,0.899899717281399,0,0.7104801149461,0.599200221036809,0.768436610643109,0.103689612308478,0.135005938331691,0,0,0.220868540951614,0,0,0,1.10115880999389,2.29837208553338,2.30409799884365,4.74790635828698,7.41049913179518,7.8137005583514,0,0,0.30559649555362,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,0,0.170430322578058,0,0,0,0,0,0,0.216491041011214,0,0,0.11418387971906,0,0.148442139064825,0.346970653532272,0,0,0.150722640552623,0.117588707135705,0,0,0.144599356919912,0,0.323533699894818,0,0.484875253135222,0,0.292780797011547,0,0.766371165625774,0,0,0,0.898743836428936,0,0.125654352112864,0,0,1.0389402227978,0.324482526135515,0.305518091550949,0,0.505445516867349,0,0.130120442962704,0,0.180062129805349,0,0,0,0,0.258703370739016,0.215567992932842,0,0.175951124163949,0.219195732427575,0.278047249225598,0,0.61734640922383,0,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.462801338662135,0,0.268273401399619,0.116765342367169,0.493679549740441,0,0.162137619091711,0.146199987425332,0,0,0,0.102904612379284,0.660837565967596,0,0,0,0.257734922644187,0.201683524623343,0,0,0,0,0.251335208800269,0,0.19496408711912,0.898819408654221,0.432276099749388,0.597423819763102,0.189667900953082,0.456994050438915,0,0.203651327845314,0.387904974335251,0.140271639780637,0.126473074248515,0.442830443938806,0.156998727841375,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0.757736633841335,0.179397413521912,0,0,0.189491411770485,0.488894929326078,0.169745085775188,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0,0.221464689648775,0.318909537314974,0,0,0.144649058581512,0,0,0.983528546038072,0.551873492609465,0.321101179975584,0,0.163934945376675,0,0,0,0,0,0,0,0,0.292255857911312,0,0.642642632843614,0.141940085208269,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.258717367565509,0.214337035031592,0.354680467284547,0,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0.119372344003136,0,0,0,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0,0,0,0.954670618015114,0.474503990371703,0.203319467126849,0,0.209088296014469,0.218362563746178,0,0.165306911450672,0,0.388844919875379,0,0,0,0,0,0,0.168956125490778,0.234714477291508,0.2604087696879,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0.221985953374065,0,0,0.19318959403219,0.187682475451182,0,0,1.00314420807073,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0,0,0.243106717068294,0,0,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0,0.561849044819294,0.128050304809739,0.229741875822453,0.476293691283074,0,0,0,0.294397840268795,0,0,0.238436189947321,0.145346416632329,0.188218760830661,0.0846146078916765,0,0,0.407412341537585,0,0.355905054372522,0.0985044823755635,0,0.309873682371932,0,0,0,0,0,0.220591419119515,0 | |||
|short_description=p@chr19:55993992..55994008,+ | |||
}} |
Latest revision as of 09:03, 4 August 2015
Short description: | p@chr19:55993992..55994008, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55993992..55994008, + |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.09e-28 | 23 |
neuroblast (sensu Vertebrata) | 8.09e-28 | 23 |
striatum neuron | 1.46e-25 | 3 |
granule cell | 1.63e-24 | 3 |
raphe nuclei neuron | 1.96e-24 | 3 |
neuron | 3.04e-19 | 33 |
neuronal stem cell | 3.04e-19 | 33 |
neuroblast | 3.04e-19 | 33 |
electrically signaling cell | 3.04e-19 | 33 |
electrically responsive cell | 3.36e-16 | 39 |
electrically active cell | 3.36e-16 | 39 |
neural cell | 1.22e-14 | 43 |
ectodermal cell | 2.71e-14 | 44 |
neurectodermal cell | 2.71e-14 | 44 |
embryonic cell | 9.73e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
raphe nuclei | 1.96e-24 | 3 |
reticular formation | 1.96e-24 | 3 |
corpus striatum | 1.27e-15 | 5 |
striatum | 1.27e-15 | 5 |
ventral part of telencephalon | 1.27e-15 | 5 |
future corpus striatum | 1.27e-15 | 5 |
central nervous system | 2.39e-10 | 73 |
nervous system | 4.73e-10 | 75 |
basal ganglion | 5.42e-10 | 8 |
nuclear complex of neuraxis | 5.42e-10 | 8 |
aggregate regional part of brain | 5.42e-10 | 8 |
collection of basal ganglia | 5.42e-10 | 8 |
cerebral subcortex | 5.42e-10 | 8 |
seminal vesicle | 6.33e-09 | 1 |
vesicular gland | 6.33e-09 | 1 |
seminal fluid secreting gland | 6.33e-09 | 1 |
ectoderm-derived structure | 9.14e-08 | 95 |
ectoderm | 9.14e-08 | 95 |
presumptive ectoderm | 9.14e-08 | 95 |
regional part of nervous system | 5.88e-07 | 54 |