FFCP PHASE1:Mm9::chr1:38954929..38955022,-: Difference between revisions
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{{FFCP|EntrezGene=98388|HGNC=|MCL_coexpression_id=13|UniProt=A2RSS2,Q6PGK7|association_with_transcript=0bp_to_ENSMUST00000027249,ENSMUST00000064410,NM_145142,uc007asy.1,uc007asz.1,uc007ata.1,uc011wjt.1_5end|description=CAGE_peak_1_at_Chst10_5end|id=chr1:38954929..38955022,-|ontology_enrichment_celltype=CL:0000540!9.88e-16!33;CL:0000047!9.88e-16!33;CL:0000031!9.88e-16!33;CL:0000404!9.88e-16!33;CL:0000117!1.34e-14!23;CL:0000337!1.34e-14!23;CL:0000393!2.09e-14!39;CL:0000211!2.09e-14!39;CL:0002319!3.86e-13!43;CL:0000221!4.16e-13!44;CL:0000133!4.16e-13!44;CL:0000055!1.35e-11!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.94e-16,33;CL:0000047,1.94e-16,33;CL:0000031,1.94e-16,33;CL:0000404,1.94e-16,33;CL:0000117,3.00e-15,23;CL:0000337,3.00e-15,23;CL:0000393,7.24e-15,39;CL:0000211,7.24e-15,39;CL:0002319,3.70e-13,43;CL:0000221,3.94e-13,44;CL:0000133,3.94e-13,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.43e-30!73;UBERON:0005743!3.43e-30!73;UBERON:0000073!3.79e-29!75;UBERON:0001016!3.79e-29!75;UBERON:0004121!2.55e-27!102;UBERON:0000924!2.55e-27!102;UBERON:0006601!2.55e-27!102;UBERON:0002346!2.21e-26!71;UBERON:0003075!2.21e-26!71;UBERON:0007284!2.21e-26!71;UBERON:0000033!5.16e-25!63;UBERON:0001049!1.60e-23!52;UBERON:0005068!1.60e-23!52;UBERON:0006241!1.60e-23!52;UBERON:0007135!1.60e-23!52;UBERON:0000955!4.00e-22!50;UBERON:0006238!4.00e-22!50;UBERON:0002616!1.45e-21!49;UBERON:0003056!3.78e-21!49;UBERON:0002020!2.94e-18!34;UBERON:0003080!7.38e-18!40;UBERON:0000153!9.30e-18!94;UBERON:0002780!3.12e-17!39;UBERON:0001890!3.12e-17!39;UBERON:0006240!3.12e-17!39;UBERON:0007811!1.06e-16!86;UBERON:0002791!4.31e-15!29;UBERON:0003528!4.31e-15!29;UBERON:0001893!4.31e-15!29;UBERON:0000956!4.76e-10!21;UBERON:0001869!4.76e-10!21;UBERON:0000203!4.76e-10!21;UBERON:0002619!3.58e-08!17;UBERON:0000468!2.82e-07!333;UBERON:0002021!3.86e-07!10;UBERON:0000411!3.86e-07!10;UBERON:0001950!3.86e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.16e-31,73;UBERON:0001016,7.65e-30,75;UBERON:0002346,8.63e-29,64;UBERON:0003075,8.63e-29,64;UBERON:0007284,8.63e-29,64;UBERON:0004121,1.67e-27,95;UBERON:0000924,1.67e-27,95;UBERON:0006601,1.67e-27,95;UBERON:0000073,1.09e-25,54;UBERON:0001049,3.22e-24,52;UBERON:0005068,3.22e-24,52;UBERON:0006241,3.22e-24,52;UBERON:0007135,3.22e-24,52;UBERON:0010371,1.40e-23,73;UBERON:0003056,9.70e-22,49;UBERON:0000955,8.43e-21,47;UBERON:0006238,8.43e-21,47;UBERON:0002616,3.15e-20,46;UBERON:0002020,1.14e-18,34;UBERON:0003080,2.76e-18,40;UBERON:0002780,1.25e-17,39;UBERON:0001890,1.25e-17,39;UBERON:0006240,1.25e-17,39;UBERON:0010314,1.95e-17,92;UBERON:0003528,2.33e-15,29;UBERON:0002791,2.33e-15,29;UBERON:0001893,2.33e-15,29;UBERON:0000956,4.27e-10,21;UBERON:0001869,4.27e-10,21;UBERON:0000203,4.27e-10,21;UBERON:0002619,3.90e-08,17;UBERON:0002021,2.03e-07,10;UBERON:0000411,2.03e-07,10;UBERON:0001950,2.03e-07,10|phase1_expression=5.2849119544582,0,0,0,0,0,0,0.645616617207881,0.422366166455,0.234064526321993,1.71217968225505,1.91453181588807,1.88320802924326,0.786783621770977,0.666219523631325,1.01237633694913,0,1.73504190947031,2.05671650408608,2.54633791078818,6.29320347117916,0,0,0.47997726838022,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02869817521847,4.66333883609767,0.550640256485045,2.34717403304412,2.8343270329458,0.878744730937887,1.55543919259427,1.53985063787899,4.31257693094915,1.8456086666351,2.17608642603403,1.68046899571232,3.08711323243136,1.14613375975503,3.09403255366465,44.5096213891115,47.0801971552109,52.6080064910129,2.71075625655306,1.77858959222228,2.6996991518442,3.9554654502679,1.4209602298922,5.09320187881288,2.30530983192933,20.841612074004,25.7861342213529,25.4493203235172,36.2776750192831,37.9893890436775,22.1708346579067,24.2489041676138,20.2228133054205,35.2370819198044,33.9648319306599,34.5614699826548,55.5241271344116,51.3245680609518,42.1939830150976,44.669279840221,29.2636557216474,34.8380004931127,41.2480019663135,31.0370264142044,37.839087502536,0.681535739998656,1.5870027622425,0,0,0,0,0,0,1.40444420131752,0,0,0,2.95771181531029,0,0,0,0,0,0,1.25602267690966,1.8125651855302,1.7813056687779,4.16364784238726,4.26251669636998,1.15307748628029,2.41156224884196,2.58695155698551,0.879666139307728,0.247194967734374,0.433798070759735,2.65383165584962,1.7794353494215,1.32504911076236,2.42437626567611,0,28.6925181071316,35.3964934514739,0.766371165625774,0.359445373517761,0,0.127070227073065,35.6501721783478,32.9400434029411,44.1046775916154,33.0266208365325,29.9187085076487,39.4797284663164,28.5544622999253,2.54598409625791,2.73695335342205,9.60346482047964,3.36706969418358,5.72529949035896,10.8053989083732,10.4436035287103,9.19299388797862,12.9269348387523,10.7615525039274,13.3056448874815,7.24369438069244,5.17363183038821,5.48407632486676,4.92663147659057,5.47989331068937,3.33656699070717,1.74126083261083,3.70407845534298,3.38358253591438,0,0,0,0.621377317606506,1.17263029990548,1.80062061461015,1.89395788468168,1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=98388 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=A2RSS2,Q6PGK7 | |||
|association_with_transcript=0bp_to_ENSMUST00000027249,ENSMUST00000064410,NM_145142,uc007asy.1,uc007asz.1,uc007ata.1,uc011wjt.1_5end | |||
|cluster_id=chr1:38954929..38955022,- | |||
|description=CAGE_peak_1_at_Chst10_5end | |||
|id=chr1:38954929..38955022,- | |||
|ontology_enrichment_celltype=CL:0000540!9.88e-16!33;CL:0000047!9.88e-16!33;CL:0000031!9.88e-16!33;CL:0000404!9.88e-16!33;CL:0000117!1.34e-14!23;CL:0000337!1.34e-14!23;CL:0000393!2.09e-14!39;CL:0000211!2.09e-14!39;CL:0002319!3.86e-13!43;CL:0000221!4.16e-13!44;CL:0000133!4.16e-13!44;CL:0000055!1.35e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.94e-16,33;CL:0000047,1.94e-16,33;CL:0000031,1.94e-16,33;CL:0000404,1.94e-16,33;CL:0000117,3.00e-15,23;CL:0000337,3.00e-15,23;CL:0000393,7.24e-15,39;CL:0000211,7.24e-15,39;CL:0002319,3.70e-13,43;CL:0000221,3.94e-13,44;CL:0000133,3.94e-13,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.43e-30!73;UBERON:0005743!3.43e-30!73;UBERON:0000073!3.79e-29!75;UBERON:0001016!3.79e-29!75;UBERON:0004121!2.55e-27!102;UBERON:0000924!2.55e-27!102;UBERON:0006601!2.55e-27!102;UBERON:0002346!2.21e-26!71;UBERON:0003075!2.21e-26!71;UBERON:0007284!2.21e-26!71;UBERON:0000033!5.16e-25!63;UBERON:0001049!1.60e-23!52;UBERON:0005068!1.60e-23!52;UBERON:0006241!1.60e-23!52;UBERON:0007135!1.60e-23!52;UBERON:0000955!4.00e-22!50;UBERON:0006238!4.00e-22!50;UBERON:0002616!1.45e-21!49;UBERON:0003056!3.78e-21!49;UBERON:0002020!2.94e-18!34;UBERON:0003080!7.38e-18!40;UBERON:0000153!9.30e-18!94;UBERON:0002780!3.12e-17!39;UBERON:0001890!3.12e-17!39;UBERON:0006240!3.12e-17!39;UBERON:0007811!1.06e-16!86;UBERON:0002791!4.31e-15!29;UBERON:0003528!4.31e-15!29;UBERON:0001893!4.31e-15!29;UBERON:0000956!4.76e-10!21;UBERON:0001869!4.76e-10!21;UBERON:0000203!4.76e-10!21;UBERON:0002619!3.58e-08!17;UBERON:0000468!2.82e-07!333;UBERON:0002021!3.86e-07!10;UBERON:0000411!3.86e-07!10;UBERON:0001950!3.86e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.16e-31,73;UBERON:0001016,7.65e-30,75;UBERON:0002346,8.63e-29,64;UBERON:0003075,8.63e-29,64;UBERON:0007284,8.63e-29,64;UBERON:0004121,1.67e-27,95;UBERON:0000924,1.67e-27,95;UBERON:0006601,1.67e-27,95;UBERON:0000073,1.09e-25,54;UBERON:0001049,3.22e-24,52;UBERON:0005068,3.22e-24,52;UBERON:0006241,3.22e-24,52;UBERON:0007135,3.22e-24,52;UBERON:0010371,1.40e-23,73;UBERON:0003056,9.70e-22,49;UBERON:0000955,8.43e-21,47;UBERON:0006238,8.43e-21,47;UBERON:0002616,3.15e-20,46;UBERON:0002020,1.14e-18,34;UBERON:0003080,2.76e-18,40;UBERON:0002780,1.25e-17,39;UBERON:0001890,1.25e-17,39;UBERON:0006240,1.25e-17,39;UBERON:0010314,1.95e-17,92;UBERON:0003528,2.33e-15,29;UBERON:0002791,2.33e-15,29;UBERON:0001893,2.33e-15,29;UBERON:0000956,4.27e-10,21;UBERON:0001869,4.27e-10,21;UBERON:0000203,4.27e-10,21;UBERON:0002619,3.90e-08,17;UBERON:0002021,2.03e-07,10;UBERON:0000411,2.03e-07,10;UBERON:0001950,2.03e-07,10 | |||
|phase1_expression=5.2849119544582,0,0,0,0,0,0,0.645616617207881,0.422366166455,0.234064526321993,1.71217968225505,1.91453181588807,1.88320802924326,0.786783621770977,0.666219523631325,1.01237633694913,0,1.73504190947031,2.05671650408608,2.54633791078818,6.29320347117916,0,0,0.47997726838022,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02869817521847,4.66333883609767,0.550640256485045,2.34717403304412,2.8343270329458,0.878744730937887,1.55543919259427,1.53985063787899,4.31257693094915,1.8456086666351,2.17608642603403,1.68046899571232,3.08711323243136,1.14613375975503,3.09403255366465,44.5096213891115,47.0801971552109,52.6080064910129,2.71075625655306,1.77858959222228,2.6996991518442,3.9554654502679,1.4209602298922,5.09320187881288,2.30530983192933,20.841612074004,25.7861342213529,25.4493203235172,36.2776750192831,37.9893890436775,22.1708346579067,24.2489041676138,20.2228133054205,35.2370819198044,33.9648319306599,34.5614699826548,55.5241271344116,51.3245680609518,42.1939830150976,44.669279840221,29.2636557216474,34.8380004931127,41.2480019663135,31.0370264142044,37.839087502536,0.681535739998656,1.5870027622425,0,0,0,0,0,0,1.40444420131752,0,0,0,2.95771181531029,0,0,0,0,0,0,1.25602267690966,1.8125651855302,1.7813056687779,4.16364784238726,4.26251669636998,1.15307748628029,2.41156224884196,2.58695155698551,0.879666139307728,0.247194967734374,0.433798070759735,2.65383165584962,1.7794353494215,1.32504911076236,2.42437626567611,0,28.6925181071316,35.3964934514739,0.766371165625774,0.359445373517761,0,0.127070227073065,35.6501721783478,32.9400434029411,44.1046775916154,33.0266208365325,29.9187085076487,39.4797284663164,28.5544622999253,2.54598409625791,2.73695335342205,9.60346482047964,3.36706969418358,5.72529949035896,10.8053989083732,10.4436035287103,9.19299388797862,12.9269348387523,10.7615525039274,13.3056448874815,7.24369438069244,5.17363183038821,5.48407632486676,4.92663147659057,5.47989331068937,3.33656699070717,1.74126083261083,3.70407845534298,3.38358253591438,0,0,0,0.621377317606506,1.17263029990548,1.80062061461015,1.89395788468168,1.96764231747404,0.462801338662135,0.465067889500816,0.268273401399619,0.817357396570186,0.658239399653922,0.820837320395476,0.56748166682099,0.438599962275997,0.658650345873152,0.805238512562231,26.7068234676442,34.4730451470603,0.330418782983798,0.793351699990633,4.26576501070468,5.10920678092965,3.35055399437443,1.00841762311671,1.33426826306922,0.760902504450237,0,0.658795818896044,1.00534083520108,1.39269530428806,0.779856348476481,0,0.648414149624083,0.199141273254367,2.65535061334314,2.51346727741403,1.1270773567308,3.05476991767971,2.71533482034676,1.8936671370386,0.69560190836683,0.295220295959204,0.156998727841375,0.370191491765402,0,0.333690211432188,0.393117990226406,0.224862112384854,0,0.241177159752417,0,0,0,0.549122826376163,0,0,0,0,0,0,0.739012760666419,4.35830247072115,1.95557971730431,2.03694102930226,0.938760993154008,0.670025029767263,0,0.195133647857799,0.472905432318573,0.221464689648775,0.637819074629948,0.491589944147214,0.518054945597687,0.289298117163023,0,1.08781136763742,0.491764273019036,0.551873492609465,29.3807579677659,22.9734905720718,0,1.00988370881749,6.62567260774139,3.90438744296638,6.89354872744957,2.62865677747807,3.7875774594007,3.67999490025482,5.66734982344852,7.59865230569411,5.92931666919785,28.9189184779626,2.6968616189571,4.80777129901589,3.74640006513225,5.44401405809367,0,1.21390318077491,1.51161778482376,0.565815239267694,0.295301892880773,0.614870295887855,1.03371317267288,1.09060118843252,0.356497378384721,0.316036757935816,1.05418608574999,0,12.2558258071364,4.50152735078276,4.65691261617916,4.07240366560025,3.01478397191865,4.28085162244969,5.43011767986999,5.78483403317739,0.23467170806371,0.21183207086382,2.20528398054962,0.98931751764888,1.93757312035087,1.20625849856312,0.835606408021955,0.492422699235184,0.874442509889552,23.5490133553347,0.683483523191411,0.619160603889667,0.370389054739423,1.88368457004691,2.59719032669948,3.20289442489132,0.169978429993855,0.559805809294632,0.690999869022119,0.954670618015114,3.63786392618306,1.42323626988794,1.72808545314882,1.88179466413022,1.74690050996942,1.34864346384821,0.909188012978695,1.04702376793612,0.648074866458964,1.86401793926078,1.12738587736838,4.78452947340732,4.46737924234164,5.05573089694524,5.94135187997563,2.87225413334323,4.92900402312167,2.47388331203505,3.04092098834561,0.966336483304024,1.72818003754719,1.26404448251271,0.405450430580328,1.1298205288131,1.03936658382236,1.43221356533985,1.58945083825012,3.36547258655913,1.62458479892035,2.92802704849628,3.42930629947499,2.31900225814733,2.53390489923356,1.25075394132428,2.45441494581295,1.13365191807606,1.55390167361845,0.0897138566094757,0.167884616364078,5.21611903886914,1.12609485270709,2.56412273974171,0.428736758158132,0.501572104035363,34.4498623996411,32.2227665555024,34.3737308063638,39.5262319390481,39.7347861466973,37.0143009720953,32.4010800111267,36.9263386643861,25.8291173120997,38.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| |||
|short_description=p1@Chst10 | |||
}} |
Latest revision as of 03:00, 27 September 2015
Short description: | p1@Chst10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Chst10_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000027249, ENSMUST00000064410, NM_145142, uc007asy.1, uc007asz.1, uc007ata.1, uc011wjt.1_5end |
EntrezGene: | Chst10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.94e-16 | 33 |
neuronal stem cell | 1.94e-16 | 33 |
neuroblast | 1.94e-16 | 33 |
electrically signaling cell | 1.94e-16 | 33 |
CNS neuron (sensu Vertebrata) | 3.00e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.00e-15 | 23 |
electrically responsive cell | 7.24e-15 | 39 |
electrically active cell | 7.24e-15 | 39 |
neural cell | 3.70e-13 | 43 |
ectodermal cell | 3.94e-13 | 44 |
neurectodermal cell | 3.94e-13 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.16e-31 | 73 |
nervous system | 7.65e-30 | 75 |
neurectoderm | 8.63e-29 | 64 |
neural plate | 8.63e-29 | 64 |
presumptive neural plate | 8.63e-29 | 64 |
ectoderm-derived structure | 1.67e-27 | 95 |
ectoderm | 1.67e-27 | 95 |
presumptive ectoderm | 1.67e-27 | 95 |
regional part of nervous system | 1.09e-25 | 54 |
neural tube | 3.22e-24 | 52 |
neural rod | 3.22e-24 | 52 |
future spinal cord | 3.22e-24 | 52 |
neural keel | 3.22e-24 | 52 |
ecto-epithelium | 1.40e-23 | 73 |
pre-chordal neural plate | 9.70e-22 | 49 |
brain | 8.43e-21 | 47 |
future brain | 8.43e-21 | 47 |
regional part of brain | 3.15e-20 | 46 |
gray matter | 1.14e-18 | 34 |
anterior neural tube | 2.76e-18 | 40 |
regional part of forebrain | 1.25e-17 | 39 |
forebrain | 1.25e-17 | 39 |
future forebrain | 1.25e-17 | 39 |
structure with developmental contribution from neural crest | 1.95e-17 | 92 |
brain grey matter | 2.33e-15 | 29 |
regional part of telencephalon | 2.33e-15 | 29 |
telencephalon | 2.33e-15 | 29 |
cerebral cortex | 4.27e-10 | 21 |
cerebral hemisphere | 4.27e-10 | 21 |
pallium | 4.27e-10 | 21 |
regional part of cerebral cortex | 3.90e-08 | 17 |
occipital lobe | 2.03e-07 | 10 |
visual cortex | 2.03e-07 | 10 |
neocortex | 2.03e-07 | 10 |