FFCP PHASE1:Hg19::chr6:7108855..7108903,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6239 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10449 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000475946,uc003mxd.2_5end | |||
|cluster_id=chr6:7108855..7108903,+ | |||
|description=CAGE_peak_5_at_RREB1_5end | |||
|id=chr6:7108855..7108903,+ | |||
|ontology_enrichment_celltype=CL:0000763!7.11e-29!112;CL:0000049!7.11e-29!112;CL:0000557!8.82e-26!71;CL:0000766!9.33e-25!76;CL:0002009!1.21e-23!65;CL:0000839!1.49e-22!70;CL:0002194!2.29e-22!63;CL:0000576!2.29e-22!63;CL:0000040!2.29e-22!63;CL:0000559!2.29e-22!63;CL:0002057!1.98e-17!42;CL:0000860!4.78e-16!45;CL:0000063!4.88e-12!578;CL:0000134!1.04e-08!358;CL:0002371!2.78e-08!591;CL:0000451!6.16e-08!10;CL:0002320!7.68e-08!365;CL:0000037!3.43e-07!172;CL:0000566!3.43e-07!172;CL:0002032!4.32e-07!165;CL:0000837!4.32e-07!165;CL:0000988!5.15e-07!182;CL:0000990!5.74e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.50e-20;33!CL:0002057;7.50e-20;33!CL:0000473;9.58e-20;39!CL:0000234;9.58e-20;39!CL:0000576;4.04e-14;48!CL:0000766;3.97e-11;69!CL:0000763;9.18e-09;100!CL:0000451;9.46e-09;10!CL:0000990;1.08e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,5.74e-31,108;CL:0000049,5.74e-31,108;CL:0000557,5.49e-29,67;CL:0000766,1.85e-27,72;CL:0002009,1.18e-26,61;CL:0002194,3.18e-25,59;CL:0000576,3.18e-25,59;CL:0000040,3.18e-25,59;CL:0000559,3.18e-25,59;CL:0000839,4.90e-25,66;CL:0000473,9.02e-22,48;CL:0000234,9.02e-22,48;CL:0000860,2.36e-18,42;CL:0002057,2.36e-18,42;CL:0000134,6.88e-10,354;CL:0002320,5.32e-09,361;CL:0000037,6.50e-09,168;CL:0000988,9.06e-09,177;CL:0002032,9.56e-09,161;CL:0000837,9.56e-09,161;CL:0000451,1.48e-08,10;CL:0000990,1.71e-07,8;CL:0000219,2.01e-07,386;CL:0000738,6.79e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;3.42e-14;42!CL:0000049;8.97e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.67e-22!80;UBERON:0002405!2.60e-20!115;UBERON:0001474!1.02e-19!86;UBERON:0004765!2.38e-17!101;UBERON:0001434!2.38e-17!101;UBERON:0002193!9.48e-16!112;UBERON:0002390!2.62e-15!102;UBERON:0003061!2.62e-15!102;UBERON:0003081!3.32e-12!216;UBERON:0000926!1.09e-11!448;UBERON:0004120!1.09e-11!448;UBERON:0006603!1.09e-11!448;UBERON:0002204!8.62e-11!167;UBERON:0002384!1.36e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.04e-24,76;UBERON:0001474,8.03e-22,82;UBERON:0002405,1.27e-21,93;UBERON:0004765,3.47e-19,90;UBERON:0001434,3.03e-17,100;UBERON:0002390,1.36e-16,98;UBERON:0003061,1.36e-16,98;UBERON:0002193,1.50e-16,108;UBERON:0003081,6.48e-12,203;UBERON:0002204,5.45e-10,167;UBERON:0002384,9.31e-09,371;UBERON:0000926,3.40e-08,315;UBERON:0004120,3.40e-08,315;UBERON:0006603,3.40e-08,315 | |||
|phase1_expression=1.2717486548939,2.99740733447376,1.26858963686374,2.00146596706261,0,0.872338524100369,2.53299878168311,0.631719873426831,1.56711376919903,2.45733936501509,4.18680700783456,3.71350332621293,3.4289707169699,0.123766352960047,0.331397375727916,0.672325146451775,0,0.730310090387373,0,0.369363174230364,0.612002073732759,1.25381888591235,0.286235987131057,0.547497700291537,1.00434111675842,0.534893840235659,0.656804715599566,0.629686250509434,2.36018566109342,1.91914699048606,1.39334510984468,4.59710612239464,5.12050061923025,1.47901604066715,0,0.142169232487422,0.587200878669695,4.43196326825502,2.20598892217156,2.60413044859022,5.15005590751826,6.47787332037959,5.40908692031792,6.68831898385998,10.9584023669755,12.6143711817664,6.97287110717054,15.6243797448294,13.0076675775944,6.61692502340946,12.5518746199259,5.20260905754887,8.27389633767885,12.2642089880927,9.47985406160392,11.1062980330137,9.27880910196676,7.19115150224271,7.95818120164347,12.8371610830437,6.39337125799041,9.23583640522805,10.1726465387032,10.2293940127847,2.03146467040009,9.07816359505824,2.4912889959823,10.80369260604,9.38669253156363,9.55630916702513,4.23779651843358,5.52416453981347,1.89877432464531,0.845021145247767,1.06302149982522,2.51590374610051,2.69588714751588,2.4028302854641,4.33959084082116,0.570025487482497,1.19350006319454,0.547992461293902,0,0,0.889509253863555,0,0,0,0,0,0,0.587237189370939,0,1.32171328579026,1.68152568894461,0.526768169550154,0.196709770113833,0.393010762749165,0.205601498999509,0.167186495390678,0,0,0,0,0,0.443067789167242,0,0,0,0.657751618414705,0.276350017785848,0.289803085735052,0.593146252648242,0,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0.318565414324097,0,0.950452044448374,0.451725357233318,0.127986611154418,1.24930726552346,0.473554504088034,0.821127996921047,0,0.534880391567015,0.289648807765598,2.43806866313962,0,0.895037932904712,1.44575660953827,1.50401373190767,1.15877215168659,3.1811437882044,0,0.850813354476611,0.443458794925128,0.702678285545008,1.96468613246569,5.10013403609559,2.22470665670658,9.7364218096405,8.53235712766409,8.24339355216964,3.10037811596945,3.43196946468077,5.57186251994347,1.78886166630035,1.72046919021225,0.347140501607594,0.56530794192401,2.09749718104953,0.825354125820202,1.04497483268405,0.775250277507987,1.77883131343355,3.01248551488203,1.61131726843659,2.28081631715554,1.22031028774085,0,0,0.982297011124877,0.898117490504679,1.80178368773316,0,0.949265659568129,1.46561395144326,2.63560834872127,3.87780264148325,1.74437620857014,1.49091585508596,0.506522046658319,2.64818361626438,2.0078563452417,1.06400514659507,1.68203280042692,1.06748995729705,1.72667283892012,2.8008993185979,0.538842688278752,1.14423332179421,1.51357427644931,0.576175924479999,0.468642863667593,0.312160076830321,0.570471821544449,0.747243402759005,1.05691048779388,1.29498355494505,1.12360645361799,0.61246251376468,0.491337269247072,1.54988671763648,3.56400857184616,0.494533858557114,2.73048408581408,2.15585442544872,0.673344455816265,0.875829639103749,1.38532057742091,1.31693286264251,1.22595118319608,1.95309476578576,0.453728732640084,2.69084453533293,1.70845911054854,2.54318281391474,1.20036438433761,2.16410311400722,2.31876486041066,1.30281799432113,3.37552664482532,1.65642908774038,3.78650661366172,2.02509777013059,1.2931684545505,3.55009592516614,1.41052937518696,0.508681776931463,4.44499962275583,3.27295344709002,2.58124135850103,0.487894824518382,0.397589304964456,0.464775771478074,0.829288440122964,0.252320850875628,0,3.12899064659632,1.92972281457866,1.38134921352481,0.464367928031979,0.721879481669586,0.591534000199219,1.51726221070292,0.964044119533928,1.32352767278873,0.871517776369625,0.71181185733329,0.539325232640658,1.37355025587742,1.92373578473195,2.21446636387394,1.40241773803446,3.2925920906512,7.3504355692771,5.07020139287323,3.9313088667105,2.95394953340702,0,0.614942192715568,0.514703430895577,2.52425656439839,0,2.31216636546751,1.20364978706088,1.3032332212413,1.03993478527958,0,0.34779121492523,0.352226082707465,1.44366447761074,0.462985512576611,1.33177906564219,2.37061319387782,1.71697232418975,6.15542515218493,9.59417487070874,6.09387765383786,1.87467667973554,1.84780341018745,2.55195175036296,1.16426079513703,0.581267877027924,0.766765358330422,18.7212030400459,1.49682337822484,3.52457796419313,2.45003920808834,2.14612136824846,1.33345578013555,2.67391897890794,2.34434894420094,6.84289784090821,1.95372236136315,1.8020583470635,0.285826432630578,1.56983518083505,1.30788020649984,0.4400297149257,0.775630294546667,3.57656445851882,0,2.6593811658487,1.04007436911366,0.257207374262142,0,1.0656887160644,1.14382394926518,2.17048642156577,1.64648067356154,0,0,0,1.20575750823834,0,2.59929777073348,3.64871341923571,3.01354254859276,4.21667878966063,0.479249710983165,1.14861935834114,0,1.30303176000821,1.02738161275192,1.96967059563885,0,0,0,0.513372145118994,0.508189248444927,0,0,0,0,0.749007023947182,5.9832291840805,1.24324654030811,0.858840442033979,0,0.271265023699736,3.32753378449291,2.3195768543631,2.05013139544115,2.45996971484698,0.902838299183157,0,0,0,2.39679919104214,1.39013783148933,1.17480694477644,1.37257369524342,1.03384013061444,1.72571360654893,1.38745825144478,2.12189300012382,0,2.41912234663744,0.992431231275107,2.91577749247319,0.841980283299221,1.28139149255701,2.55853624533352,1.93024705372329,0,0.925258162815933,0.887808626565635,1.14978018419333,0,1.51073491997947,0.120859449591622,2.80709058424599,1.74953878978203,0.918515585316854,0.364182336013434,1.04899531967539,2.70719767744447,1.15523005656622,1.56869953835371,1.46139224653261,1.05551628892876,1.13733384070897,0.510281115829547,0.215915916102139,3.08454505380579,2.43851793789468,4.51520796469368,2.03901018436031,3.3243040357149,3.1342465661105,0.877039506583738,0.261435451024901,0,0.656029291399411,0.650756789328606,4.94596855909067,0.54941678891006,0.660075999364704,4.59412430396938,5.20048196829217,0,0.386682873168488,0.616194468458578,1.38153307253517,0.964856007391714,1.07420244868274,0.435050081742686,0.852266274161009,0.801288320820636,2.14870389969272,4.22818148203234,8.80527716212631,3.13589120652205,0.464845549297286,3.1481234683064,2.0911118104818,3.08033580176089,0.532306030317022,0,0.9266210955196,0.429374660225974,1.116475108079,1.2655176988749,1.14378116354295,2.55897791311334,1.28381696410176,1.27281299170375,2.35484592059769,0.899362287916574,0.823611089208164,0.353437207037059,1.2130948894399,0,1.26377536871694,0,2.19342140668156,2.11300293513511,1.09199929126389,0.424216295861138,0,1.10273068709225,1.32687795048244,0.438450885253763,2.31510213706675,1.9676842561399,0.608731130888112,1.54911749049875,1.12678241012897,1.29070216983646,0.982490410131212,1.78335525740625,1.41904425628239,1.26664581178598,0.329294892959902,1.51789269506286,1.74967360122491,2.11688647996127,2.01090682660736,3.26672954583968,3.85989583184795,4.73555909938353,3.36942951335251,5.32116184244011,2.75668080248351,0,0.764637207142375,1.13929437434833,0.238231775457789,1.64544909234478,0.648473311192717,0.540031437238115,0.79312517629427,0.213648142254946,0,0,0,0.144269212976445,0.640276590135727,0.956557636372934,0.199579371432817,2.2980644415884,2.96343015813436,1.29848776109822,0.561594356226918,2.05411211129873,1.56679895773023,5.01268954180134,2.03150133361924,1.92705690124439,2.21979677910152,3.40676990152261,1.37402137902306,1.53620382154229,2.46043718681657,2.33588798396672,0.781552381608161,1.67043704337145,1.23087398947712,0.811367035427949,2.99764771198038,2.81974010175699,1.12284324244932,2.63714722689409,0.121360521749513,1.5602073798847,0.284136146806413,2.3874448473769,2.37571744666111,4.60741053148848,0,0.844016498463076,0.890469640183247,0.988823245360557,1.26675244876796,1.39473591775749,1.38141957765574,0,0.306806047506464,0,0.933118762985422,1.70749867179921,1.61119057208048,4.60415133204185,1.7755813014648,0,2.22273980289274,0,0.0927680981618513,0,2.3438498497671,2.79871999987826,2.17499872630438,0.1137934482855,2.03402920234213,0.709163045303809,0,0.874813840149763,0.520874984799877,0,0.482385754501632,0,0.110579259931225,0,0.438770794307945,1.19832309870889,3.48559360696508,2.30850775511391,0,0.922255617552241,1.52587995496613,0.760531603454056,2.23300811812344,2.74792780205587,5.86338253620498,1.02193298195737,2.35470384592537,1.16348177330109,2.03036094555463,1.76456280885966,3.69207491346854,1.13852239634511,2.70192184266644,0.843992258112108,1.63232808159148,0.565412285735763,1.08194319871046,0,2.0345239835768,1.22206028986725,1.77912677208373,0.494255755786011,0.626531697032732,0.67401132980677,2.40773294189637,0,0.182454789215666,0.586993856796269,1.21390189767046,0.789168805698781,0,0,2.02197054811161,1.05226393590145,0.622129148383483,0,0,0.313932918407225,0,0.569219092059585,0.554698692052555,1.90915712168644,2.35181753794506,0.957651272384428,1.39781334593624,0.51595809741485,1.06431964417994,1.31560770755134,0.492692742319255,4.84945082442097,0.0882561266915003,0.225980740780532,0.548167698587004,0.397429223405979,0.0633107959558787,0.782205530939212,0.240476460754601,2.13452994739353,1.39866726707491,0.864542502924636,1.03082936549324,0.686379991447858,1.87271237384595,0.99402028452346,2.82832841540154,1.08723364858891,1.46443984837266,0.815985741090574,0.866851769704557,0.600420288709789,0.547621515567972,7.66479528401834,0.859530882839914,1.57732412567589,1.95497680890578,2.7499250881402,2.87149209830726,1.19807400299395,1.71690419254628,1.11585728720936,1.20930250476107,1.80149941771202,3.49487848582361,0.630265458457789,0.824158583811665,1.14586024552114,0.590564889088493,0.592713324460491,0,0.408610218334727,0.482259445395058,0.137539436597234,0.83088067605837,15.9731463001565,9.2856234546954,0.303747783290123,2.0126081255956,1.81253126788156,2.62272940674991,0.633602019116439,0,1.53532157855556,2.1440859791201,0,1.017074150619,1.62899880526114,0.864221491201268,0.326587360109409,0,1.23138781124008,0.340776043570843,0.453248366080503,3.22414914091781,1.32506888912221,0.775697738169303,0.52893040697076,0.342173675768659,3.52407511158336,2.56289790162467,3.93010762749165,4.97086866416635,0.992332043623902,0,0.243585196761792,0.638341257770182,2.1760712134779,5.5151776684994,7.04594826555962,2.95085367638824,1.09937867375164,0,0,0.625954653532499,1.72022758707021,0.776503360757966,0.745156835296601,1.10678907948985,0,2.27473676312472,0.570930667089935,0.941063278792687,1.40500471742064,0.724605143054126,1.79105763464249,1.40227985908335,1.10961172300523,2.08343305802598,1.25783950876288,0.889811221596536,1.37304041038154,1.51230923763239,0.932623203496683,0.591420599958536,1.43367090447332,0.899606224327209,1.39736661188633,0.414706207840855,3.19010057469594,2.08698024724694,1.95334891696384,1.52322084867518,1.22061219961398,1.27294061441792,1.28892668450986,0,3.18476710958893,1.60011105865261,1.37358282073117,1.6837474438296,0,0.963099152036517,1.71553273099941,0.782982875895635,0.453411851024545,1.389134845943,0.97894681802587,0.895444205407437,0.617602894321944,0.438568099157414,2.12026975135057,0.578742114812744,1.18259708457151,2.04993214870357,0.345430341731199,0.303859956177382,0.553033744606923,10.9121772950058,8.23762009942851,7.52400813576883,0.655219697692825,0,1.69049698686902,0.19998739585493,1.49368421571797,0.172214979660816,0,0.368211900503681,1.67855409263333,0.622077260032973,0,0,0.314531883711793,0,1.18812770967818,0.850299680406731,2.10690799240304,2.79322458986622,0.954013051960256,0.394308725006267,0,1.05802783107205,0.918736432059601,0.128458450192919,0,0.319267718114302,0.205116364240755,0,0.207471757392654,0.322951291263702,0,0.785181748008205,0.235939446695481,1.10057159113007,0.577628330751691,1.1441462864015,1.3807198521202,1.5913297769302,1.80504788038217,0.40341013740704,0.781514011233092,3.40478702825849,1.96526301012116,6.2099556211159,0.135075169236789,0,0.620060389503552,0.126831620387814,0,2.19303106742873,2.48105589194647,0.175871244359621,2.04419884223352,0.535701835878287,0,1.21393120847326,0.91064876540519,3.193285325855,0.230467975111559,1.54339208493677,0.475788130837822,0.0657727735628491,1.06374456795571,0.889851215136553,1.25588948560822,0,1.12108865325516,1.82631744101899,1.51149313853035,0,1.57248397188644,0.632054446930906,0.116241425368125,1.21700790611806,4.00855682365126,1.65772931330429,1.7071847709395,4.14755797088455,2.58136415292167,0.236664001461131,0.170426809518315,2.11693525095465,0.9164274741762,1.86123831398592,0.955538938977433,2.12525320415805,0.785201868921944,0.609589624911347,2.58971534875158,0.718639647993729,3.4794432940146,0.971421986118279,0.467878926924211,0.198950775161368,0.118920090777569,0.79062257427272,0,1.05673990496671,2.08370226891451,1.74847648403166,1.41095188908457,2.69663153929296,2.35676547101626,0.981542335574726,0,1.2679671827502,2.20905249094162,2.16163011353663,3.99638905436179,0.699588091474503,0.71421575442263,1.41157948686277,0.401206833445841,1.46067277649303,2.75237570042724,0.860037498908708,3.15543124386369,0.135982980381829,0,3.1741610430924,1.11598505450025,2.31087814315709,1.29787968637137,0.756998549010474,0.327796715891087,0.380095503034311,1.42784361638774,1.06886962106224,3.49200618232411,1.75495277504663,1.13668047327359,3.21556956187414,1.65833887891756,0.413731983447581,4.90438158372256,2.3806443146374,0.581300188524055,1.42771842880473,1.34558235096736,2.92776928079559,3.63810940124795,1.95945073107265,1.02669990325584,3.36760265072938,2.58199939413635,2.99394320891412,1.46525883499754,0.853818767021724,1.9307228228694,0.718601616852695,0,2.93379466038879,4.06896178315738,1.99727032255654,1.61019034872821,0.961705476909699 | |||
|short_description=p5@RREB1 | |||
}} |
Latest revision as of 15:31, 19 September 2015
Short description: | p5@RREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RREB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000475946, uc003mxd.2_5end |
EntrezGene: | RREB1 |
HGNC: | 10449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 5.74e-31 | 108 |
common myeloid progenitor | 5.74e-31 | 108 |
granulocyte monocyte progenitor cell | 5.49e-29 | 67 |
myeloid leukocyte | 1.85e-27 | 72 |
macrophage dendritic cell progenitor | 1.18e-26 | 61 |
monopoietic cell | 3.18e-25 | 59 |
monocyte | 3.18e-25 | 59 |
monoblast | 3.18e-25 | 59 |
promonocyte | 3.18e-25 | 59 |
myeloid lineage restricted progenitor cell | 4.90e-25 | 66 |
defensive cell | 9.02e-22 | 48 |
phagocyte | 9.02e-22 | 48 |
classical monocyte | 2.36e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.36e-18 | 42 |
mesenchymal cell | 6.88e-10 | 354 |
connective tissue cell | 5.32e-09 | 361 |
hematopoietic stem cell | 6.50e-09 | 168 |
hematopoietic cell | 9.06e-09 | 177 |
hematopoietic oligopotent progenitor cell | 9.56e-09 | 161 |
hematopoietic multipotent progenitor cell | 9.56e-09 | 161 |
dendritic cell | 1.48e-08 | 10 |
conventional dendritic cell | 1.71e-07 | 8 |
motile cell | 2.01e-07 | 386 |
leukocyte | 6.79e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.04e-24 | 76 |
bone element | 8.03e-22 | 82 |
immune system | 1.27e-21 | 93 |
skeletal element | 3.47e-19 | 90 |
skeletal system | 3.03e-17 | 100 |
hematopoietic system | 1.36e-16 | 98 |
blood island | 1.36e-16 | 98 |
hemolymphoid system | 1.50e-16 | 108 |
lateral plate mesoderm | 6.48e-12 | 203 |
musculoskeletal system | 5.45e-10 | 167 |
connective tissue | 9.31e-09 | 371 |
mesoderm | 3.40e-08 | 315 |
mesoderm-derived structure | 3.40e-08 | 315 |
presumptive mesoderm | 3.40e-08 | 315 |