FFCP PHASE1:Hg19::chr7:93516618..93516631,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:93516618..93516631,- | |||
|coexpression_cluster_id=C378 | |||
|description=CAGE_peak_at_chr7:93516618..93516631,- | |||
|id=chr7:93516618..93516631,- | |||
|ontology_enrichment_celltype=CL:0000680!2.77e-28!57;CL:0000056!2.77e-28!57;CL:0000355!2.77e-28!57;CL:0000192!7.39e-28!42;CL:0000514!7.39e-28!42;CL:0000359!2.27e-27!32;CL:0000187!3.73e-27!54;CL:0000393!2.56e-26!60;CL:0000211!2.56e-26!60;CL:0000183!7.77e-24!59;CL:0000055!2.07e-17!180;CL:0000222!2.63e-16!119;CL:0002494!1.27e-11!16;CL:0002595!3.42e-09!5;CL:0000220!2.78e-08!246;CL:0000723!3.86e-08!436;CL:0002321!4.32e-08!248;CL:0000048!7.86e-08!430;CL:0000034!1.40e-07!444;CL:0002371!1.82e-07!591;CL:0000144!9.86e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.00e-28;32!CL:0000192;4.43e-20;43!CL:0002595;4.58e-18;5!CL:0002494;6.51e-15;16!CL:0000187;4.62e-13;55!CL:0002593;2.84e-12;2!CL:0000393;2.44e-10;61!CL:0000211;2.44e-10;61!CL:0002592;1.09e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,9.12e-29,32;CL:0000192,4.05e-27,43;CL:0000514,4.05e-27,43;CL:0000187,2.50e-23,55;CL:0000680,6.32e-22,58;CL:0000056,6.32e-22,58;CL:0000355,6.32e-22,58;CL:0000393,1.16e-20,61;CL:0000211,1.16e-20,61;CL:0002595,4.59e-18,5;CL:0002494,5.85e-15,16;CL:0002593,2.84e-12,2;CL:0000222,1.34e-08,121;CL:0002592,1.08e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;4.43e-20;43!CL:0000355;2.81e-11;58!UBERON:0005795;1.73e-08;10 | |||
|ontology_enrichment_disease=DOID:2394!1.54e-15!14;DOID:120!2.63e-10!27;DOID:193!2.71e-09!29;DOID:0060072!2.97e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.81e-23;14!DOID:0060084;1.68e-16;3!DOID:127;1.68e-16;3!DOID:120;2.08e-14;27!DOID:193;2.63e-13;29!DOID:0060072;1.67e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.87e-23,14;DOID:0060084,1.60e-16,3;DOID:127,1.60e-16,3;DOID:120,1.86e-14,27;DOID:193,2.37e-13,29;DOID:0060072,1.60e-12,4 | |||
|ontology_enrichment_uberon=UBERON:0004872!5.52e-26!84;UBERON:0001134!1.34e-25!61;UBERON:0002036!1.34e-25!61;UBERON:0003082!1.34e-25!61;UBERON:0002385!2.18e-24!63;UBERON:0001015!2.18e-24!63;UBERON:0000383!2.18e-24!63;UBERON:0001637!3.97e-24!42;UBERON:0003509!3.97e-24!42;UBERON:0004572!3.97e-24!42;UBERON:0004290!9.82e-24!70;UBERON:0002049!5.08e-22!79;UBERON:0007798!5.08e-22!79;UBERON:0001981!5.73e-22!60;UBERON:0007500!5.73e-22!60;UBERON:0004537!5.73e-22!60;UBERON:0006965!5.73e-22!60;UBERON:0000914!1.70e-21!83;UBERON:0002329!1.70e-21!83;UBERON:0003077!1.70e-21!83;UBERON:0003059!1.70e-21!83;UBERON:0007282!1.70e-21!83;UBERON:0009618!1.70e-21!83;UBERON:0007285!1.70e-21!83;UBERON:0004535!2.24e-21!110;UBERON:0000486!1.29e-20!82;UBERON:0001009!2.16e-20!113;UBERON:0000055!2.65e-20!69;UBERON:0004573!1.29e-19!33;UBERON:0004571!1.29e-19!33;UBERON:0000490!8.80e-17!138;UBERON:0003914!7.19e-16!118;UBERON:0005256!1.77e-12!143;UBERON:0003100!1.96e-11!41;UBERON:0000948!5.63e-11!24;UBERON:0005498!5.63e-11!24;UBERON:0004140!5.63e-11!24;UBERON:0009881!5.63e-11!24;UBERON:0004141!5.63e-11!24;UBERON:0003084!5.63e-11!24;UBERON:0007005!5.63e-11!24;UBERON:0004139!5.63e-11!24;UBERON:0004291!5.63e-11!24;UBERON:0003513!4.50e-10!8;UBERON:0000483!8.87e-10!309;UBERON:0003134!1.51e-09!37;UBERON:0000474!1.51e-09!37;UBERON:0000992!1.54e-09!13;UBERON:0000119!1.70e-09!312;UBERON:0007100!2.73e-09!27;UBERON:0003834!3.42e-09!5;UBERON:0001533!3.42e-09!5;UBERON:0002118!6.58e-09!5;UBERON:0004532!6.58e-09!5;UBERON:0003498!2.47e-08!5;UBERON:0005985!2.47e-08!5;UBERON:0000926!8.78e-08!448;UBERON:0004120!8.78e-08!448;UBERON:0006603!8.78e-08!448;UBERON:0005156!5.38e-07!59;UBERON:0000990!5.38e-07!59;UBERON:0002100!6.51e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000992;4.27e-19;13!UBERON:0003834;4.58e-18;5!UBERON:0001533;4.58e-18;5!UBERON:0002118;8.64e-17;5!UBERON:0001637;4.99e-16;42!UBERON:0003509;4.99e-16;42!UBERON:0004572;4.99e-16;42!UBERON:0004573;7.63e-15;33!UBERON:0004571;7.63e-15;33!UBERON:0003513;6.21e-13;7!UBERON:0002119;6.34e-13;4!UBERON:0003134;8.34e-13;33!UBERON:0002456;2.84e-12;2!UBERON:0000991;1.80e-11;21!UBERON:0000474;3.45e-11;37!UBERON:0000948;1.34e-10;22!UBERON:0003100;9.82e-10;41!UBERON:0007100;3.20e-09;25!UBERON:0007500;8.39e-08;56!UBERON:0001981;8.39e-08;56!UBERON:0004537;8.39e-08;56!UBERON:0003498;1.09e-07;3!UBERON:0005985;1.09e-07;3!UBERON:0001621;1.09e-07;3!UBERON:0002049;6.73e-07;75!UBERON:0007798;6.73e-07;75!UBERON:0005156;7.22e-07;59!UBERON:0000990;7.22e-07;59!UBERON:0003133;7.46e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.36e-21,42;UBERON:0003509,3.36e-21,42;UBERON:0004572,3.36e-21,42;UBERON:0004872,1.90e-20,83;UBERON:0001134,2.87e-20,62;UBERON:0002036,2.87e-20,62;UBERON:0003082,2.87e-20,62;UBERON:0002385,1.62e-19,64;UBERON:0001015,1.62e-19,64;UBERON:0000383,1.62e-19,64;UBERON:0002329,1.66e-19,71;UBERON:0003059,1.66e-19,71;UBERON:0007282,1.66e-19,71;UBERON:0004290,1.66e-19,71;UBERON:0009618,1.66e-19,71;UBERON:0003077,3.52e-19,72;UBERON:0007285,3.52e-19,72;UBERON:0000992,3.57e-19,13;UBERON:0007524,7.31e-19,73;UBERON:0003834,4.59e-18,5;UBERON:0001533,4.59e-18,5;UBERON:0007503,2.13e-17,78;UBERON:0004573,4.04e-17,33;UBERON:0004571,4.04e-17,33;UBERON:0002118,6.49e-17,5;UBERON:0000486,4.13e-16,83;UBERON:0003134,4.44e-15,37;UBERON:0000474,4.44e-15,37;UBERON:0007500,3.12e-14,59;UBERON:0001981,3.12e-14,59;UBERON:0004537,3.12e-14,59;UBERON:0006965,3.12e-14,59;UBERON:0003100,2.13e-13,41;UBERON:0003513,6.21e-13,7;UBERON:0004535,6.40e-13,109;UBERON:0002119,6.48e-13,4;UBERON:0000948,1.43e-12,24;UBERON:0005498,1.43e-12,24;UBERON:0004140,1.43e-12,24;UBERON:0009881,1.43e-12,24;UBERON:0004141,1.43e-12,24;UBERON:0003084,1.43e-12,24;UBERON:0007005,1.43e-12,24;UBERON:0004139,1.43e-12,24;UBERON:0004291,1.43e-12,24;UBERON:0001009,1.83e-12,112;UBERON:0002456,2.84e-12,2;UBERON:0000926,2.99e-12,315;UBERON:0004120,2.99e-12,315;UBERON:0006603,2.99e-12,315;UBERON:0000055,5.84e-12,68;UBERON:0003914,9.39e-12,117;UBERON:0000991,1.62e-11,21;UBERON:0009196,1.62e-11,21;UBERON:0009117,1.62e-11,21;UBERON:0005564,1.62e-11,21;UBERON:0003133,3.93e-11,48;UBERON:0007100,4.86e-11,27;UBERON:0004176,5.98e-11,22;UBERON:0005156,2.33e-10,59;UBERON:0000990,2.33e-10,59;UBERON:0002049,4.69e-10,78;UBERON:0007798,4.69e-10,78;UBERON:0003498,9.15e-10,5;UBERON:0005985,9.15e-10,5;UBERON:0005256,1.03e-09,122;UBERON:0001621,1.08e-07,3;UBERON:0003104,1.92e-07,160;UBERON:0009142,1.92e-07,160;UBERON:0000490,2.39e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0,0,0,0.331397375727916,2.01697543935533,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,0.12786256184353,0,0,0,0,0.486634870302636,0.189069634328136,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,0,0,0,0,0,0,0,0.805658634218294,0,0.24406205754817,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0.560677600142307,0,0,0,1.75123873690594,1.47115712802113,0,0,0,0.624320153660641,0,2.09228152772521,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0.150238058906597,0.680593098960126,0,0,0,0.300091096084402,0.103052529238439,0,0,0.168776332241266,0.194874010322397,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0.234817388471643,0,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0,0,0.358234090811393,0.290633938513962,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0.845302752556,0,1.04007436911366,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.144781306667579,0.410952645100767,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0.482561763430822,0,0.462629081407967,0.710246901252508,0.164254312027618,2.07701771673448,0.581051892299796,0,0,0,0.34444334449382,0.546273504020151,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0.681813019328807,0,0,0,0,0.10115778085555,0,0.31481234683064,0.6970372701606,1.23213432070436,2.66153015158511,0,2.7798632865588,0.286249773483982,0,0.316379424718726,0.953150969619124,0,0,0.636406495851874,2.35484592059769,0.179872457583315,0.274537029736055,1.41374882814824,0.404364963146632,1.58510321173008,2.52755073743389,0,10.4796800541452,8.45201174054043,0,1.83827061539827,2.26016233240486,0.551365343546124,5.30751180192976,5.69986150829892,0,0,1.21746226177622,0.30982349809975,1.69017361519345,0.143411352204052,0,0.7133421029625,0.354761064070598,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.667852230137435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40728582029699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0.520679215005393,0,0,0,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62899880526114,3.45688596480507,7.51150928251641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0.568209015825267,0.251567901752575,0,0.228840068396924,0.151230923763239,2.79786961049005,7.68846779946096,4.46030948058367,0,3.10525913752519,7.87941794897625,3.45594228925393,0.521745061811734,0.601030435988874,0,2.84809513243263,2.18218391043071,3.11490615423217,1.85613503951397,0.796191777397232,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,2.02516545277025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655087670040387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86274977341542,0,0,0,0,0,0,0,0,0,0,1.94334832096759,0,0.0714765441766563,0,0.348724276104376,0,0,0,0,0,0,0.236664001461131,0,0,0.22910686854405,0,0,0.782988022584546,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr7:93516618..93516631,- | |||
}} |
Latest revision as of 12:36, 31 July 2015
Short description: | p@chr7:93516618..93516631, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:93516618..93516631, - |
Coexpression cluster: | C378_Smooth_mesenchymal_placenta_clear_leiomyoma_renal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 9.12e-29 | 32 |
smooth muscle cell | 4.05e-27 | 43 |
smooth muscle myoblast | 4.05e-27 | 43 |
muscle cell | 2.50e-23 | 55 |
muscle precursor cell | 6.32e-22 | 58 |
myoblast | 6.32e-22 | 58 |
multi-potent skeletal muscle stem cell | 6.32e-22 | 58 |
electrically responsive cell | 1.16e-20 | 61 |
electrically active cell | 1.16e-20 | 61 |
smooth muscle cell of the subclavian artery | 4.59e-18 | 5 |
cardiocyte | 5.85e-15 | 16 |
smooth muscle cell of the internal thoracic artery | 2.84e-12 | 2 |
mesodermal cell | 1.34e-08 | 121 |
smooth muscle cell of the coronary artery | 1.08e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.87e-23 | 14 |
cell type benign neoplasm | 1.60e-16 | 3 |
leiomyoma | 1.60e-16 | 3 |
female reproductive organ cancer | 1.86e-14 | 27 |
reproductive organ cancer | 2.37e-13 | 29 |
benign neoplasm | 1.60e-12 | 4 |