FFCP PHASE1:Mm9::chr4:48058102..48058110,+: Difference between revisions
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{{FFCP|EntrezGene=18124|HGNC=|MCL_coexpression_id=267|UniProt=B1AVI1|association_with_transcript=0bp_to_ENSMUST00000154186,uc008suu.1_5end|description=CAGE_peak_5_at_Nr4a3_5end|id=chr4:48058102..48058110,+|ontology_enrichment_celltype=CL:0000791!3.28e-08!9;CL:0000789!3.28e-08!9;CL:0002420!3.28e-08!9;CL:0002419!3.28e-08!9;CL:0000790!3.28e-08!9;CL:0000624!1.90e-07!8|ontology_enrichment_celltype_v019_2=CL:0000791,6.53e-17,9;CL:0000789,6.53e-17,9;CL:0002420,6.53e-17,9;CL:0002419,6.53e-17,9;CL:0000790,6.53e-17,9;CL:0000624,3.72e-15,8;CL:0000838,9.03e-15,12;CL:0000542,1.98e-13,13;CL:0000051,1.98e-13,13;CL:0000084,2.07e-13,11;CL:0000827,2.07e-13,11;CL:0000893,9.12e-12,6;CL:0002489,9.12e-12,6;CL:0000898,9.12e-12,6;CL:0000809,9.12e-12,6;CL:0000810,9.12e-12,6;CL:0000895,9.12e-12,6;CL:0000808,9.12e-12,6;CL:0000894,9.12e-12,6;CL:0000806,9.12e-12,6;CL:0000807,9.12e-12,6;CL:0000805,9.12e-12,6;CL:0002425,9.12e-12,6;CL:0002436,9.12e-12,6;CL:0002427,9.12e-12,6;CL:0002428,9.12e-12,6;CL:0002429,9.12e-12,6;CL:0002433,9.12e-12,6;CL:0002431,9.12e-12,6;CL:0002432,9.12e-12,6;CL:0000738,2.31e-11,17;CL:0002087,2.31e-11,17;CL:0002031,7.71e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002791!1.83e-10!29;UBERON:0003528!1.83e-10!29;UBERON:0001893!1.83e-10!29;UBERON:0000955!2.02e-10!50;UBERON:0006238!2.02e-10!50;UBERON:0000956!3.00e-10!21;UBERON:0001869!3.00e-10!21;UBERON:0000203!3.00e-10!21;UBERON:0002020!3.14e-10!34;UBERON:0003080!3.38e-10!40;UBERON:0001049!4.40e-10!52;UBERON:0005068!4.40e-10!52;UBERON:0006241!4.40e-10!52;UBERON:0007135!4.40e-10!52;UBERON:0002346!6.08e-10!71;UBERON:0003075!6.08e-10!71;UBERON:0007284!6.08e-10!71;UBERON:0002616!6.80e-10!49;UBERON:0002780!8.06e-10!39;UBERON:0001890!8.06e-10!39;UBERON:0006240!8.06e-10!39;UBERON:0004121!1.52e-09!102;UBERON:0000924!1.52e-09!102;UBERON:0006601!1.52e-09!102;UBERON:0000073!2.27e-09!75;UBERON:0001016!2.27e-09!75;UBERON:0001017!2.27e-09!73;UBERON:0005743!2.27e-09!73;UBERON:0000033!1.09e-08!63;UBERON:0000153!1.13e-08!94;UBERON:0007811!2.35e-08!86;UBERON:0002619!4.20e-08!17;UBERON:0002021!7.35e-08!10;UBERON:0000411!7.35e-08!10;UBERON:0001950!7.35e-08!10;UBERON:0003056!9.54e-08!49|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.81e-17,21;UBERON:0001869,1.81e-17,21;UBERON:0000203,1.81e-17,21;UBERON:0003528,2.32e-16,29;UBERON:0002791,2.32e-16,29;UBERON:0001893,2.32e-16,29;UBERON:0002021,4.18e-16,10;UBERON:0000411,4.18e-16,10;UBERON:0001950,4.18e-16,10;UBERON:0002780,1.39e-13,39;UBERON:0001890,1.39e-13,39;UBERON:0006240,1.39e-13,39;UBERON:0002020,3.42e-13,34;UBERON:0003080,4.21e-13,40;UBERON:0000955,5.29e-13,47;UBERON:0006238,5.29e-13,47;UBERON:0002619,9.64e-13,17;UBERON:0002616,5.20e-12,46;UBERON:0000073,2.22e-10,54;UBERON:0001049,5.83e-10,52;UBERON:0005068,5.83e-10,52;UBERON:0006241,5.83e-10,52;UBERON:0007135,5.83e-10,52;UBERON:0003056,1.10e-09,49;UBERON:0001017,2.35e-09,73;UBERON:0001016,6.31e-09,75;UBERON:0010314,2.65e-08,92;UBERON:0002346,4.58e-07,64;UBERON:0003075,4.58e-07,64;UBERON:0007284,4.58e-07,64;UBERON:0010371,6.00e-07,73|phase1_expression=1.28119077683835,0.348975407639361,0,0,1.00179145989269,0.33575854382378,0,5.55230290798778,19.7104211012333,25.2789688427753,6.33506482434368,5.58405112967355,5.13602189793617,6.90621179110079,0,0,0,0.157731082679119,0.137114433605739,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,1.36609096991689,0,0.125896817975577,0.101376931219515,1.28482726513177,0,0.218025156380447,0.219686182734472,0.388859798148567,0.139986421625363,0,3.18786951509699,19.5847778343063,15.7964085596958,0.514518872071894,0,0,0.404632921719196,0,1.26766280701236,0,0,0,0,0,0,1.15265491596466,1.55534418462716,2.16009501330705,1.47227472945967,0.285650984403804,0.441737081903227,0.979926393719632,0.191690942036473,0,0,1.27687338085188,0.921639199537461,0.131886287730194,0.914876436024097,1.56274011167028,0,0,0.763991238884051,0,0.284743361598206,0.372798891650601,0.151452386666368,0.226714680320357,0.579728977403356,0,0,0,0,0,0,0,0,0,1.69012103732017,0,0,0,0,0,0,0,1.8125651855302,4.45326417194474,0.346970653532272,1.21786191324856,0.691846491768175,1.05505848386836,2.23418543557839,2.26199864393416,0,2.4581890676385,0,0.323533699894818,0,0,0,4.09893115816166,0.41889341362691,0,1.43778149407104,0.599902730993408,0.381210681219194,0.898743836428936,2.28750301409313,1.00523481690292,3.82413504423008,3.3243009452943,0.62336413367868,1.62241263067758,0.407357455401265,0,0,0.210441855886474,0,0,0,0.150704817835715,0.136072998302656,0,0.0937017245597288,0.258703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0,0,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0.284163499395593,0.414251545071004,0.234526059981096,0,0.23674473558521,0.393528463494808,0,0.232533944750408,0.268273401399619,0.583826711835847,1.6455984991348,0.985004784474571,0.405344047729279,0.730999937126662,0.658650345873152,0.268412837520744,4.83666881697493,7.20332286654991,0,0,0,0,0,0.20168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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18124 | |||
|HGNC= | |||
|MCL_coexpression_id=267 | |||
|TSSclassifier=NA | |||
|UniProt=B1AVI1 | |||
|association_with_transcript=0bp_to_ENSMUST00000154186,uc008suu.1_5end | |||
|cluster_id=chr4:48058102..48058110,+ | |||
|description=CAGE_peak_5_at_Nr4a3_5end | |||
|id=chr4:48058102..48058110,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.28e-08!9;CL:0000789!3.28e-08!9;CL:0002420!3.28e-08!9;CL:0002419!3.28e-08!9;CL:0000790!3.28e-08!9;CL:0000624!1.90e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.53e-17,9;CL:0000789,6.53e-17,9;CL:0002420,6.53e-17,9;CL:0002419,6.53e-17,9;CL:0000790,6.53e-17,9;CL:0000624,3.72e-15,8;CL:0000838,9.03e-15,12;CL:0000542,1.98e-13,13;CL:0000051,1.98e-13,13;CL:0000084,2.07e-13,11;CL:0000827,2.07e-13,11;CL:0000893,9.12e-12,6;CL:0002489,9.12e-12,6;CL:0000898,9.12e-12,6;CL:0000809,9.12e-12,6;CL:0000810,9.12e-12,6;CL:0000895,9.12e-12,6;CL:0000808,9.12e-12,6;CL:0000894,9.12e-12,6;CL:0000806,9.12e-12,6;CL:0000807,9.12e-12,6;CL:0000805,9.12e-12,6;CL:0002425,9.12e-12,6;CL:0002436,9.12e-12,6;CL:0002427,9.12e-12,6;CL:0002428,9.12e-12,6;CL:0002429,9.12e-12,6;CL:0002433,9.12e-12,6;CL:0002431,9.12e-12,6;CL:0002432,9.12e-12,6;CL:0000738,2.31e-11,17;CL:0002087,2.31e-11,17;CL:0002031,7.71e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002791!1.83e-10!29;UBERON:0003528!1.83e-10!29;UBERON:0001893!1.83e-10!29;UBERON:0000955!2.02e-10!50;UBERON:0006238!2.02e-10!50;UBERON:0000956!3.00e-10!21;UBERON:0001869!3.00e-10!21;UBERON:0000203!3.00e-10!21;UBERON:0002020!3.14e-10!34;UBERON:0003080!3.38e-10!40;UBERON:0001049!4.40e-10!52;UBERON:0005068!4.40e-10!52;UBERON:0006241!4.40e-10!52;UBERON:0007135!4.40e-10!52;UBERON:0002346!6.08e-10!71;UBERON:0003075!6.08e-10!71;UBERON:0007284!6.08e-10!71;UBERON:0002616!6.80e-10!49;UBERON:0002780!8.06e-10!39;UBERON:0001890!8.06e-10!39;UBERON:0006240!8.06e-10!39;UBERON:0004121!1.52e-09!102;UBERON:0000924!1.52e-09!102;UBERON:0006601!1.52e-09!102;UBERON:0000073!2.27e-09!75;UBERON:0001016!2.27e-09!75;UBERON:0001017!2.27e-09!73;UBERON:0005743!2.27e-09!73;UBERON:0000033!1.09e-08!63;UBERON:0000153!1.13e-08!94;UBERON:0007811!2.35e-08!86;UBERON:0002619!4.20e-08!17;UBERON:0002021!7.35e-08!10;UBERON:0000411!7.35e-08!10;UBERON:0001950!7.35e-08!10;UBERON:0003056!9.54e-08!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.81e-17,21;UBERON:0001869,1.81e-17,21;UBERON:0000203,1.81e-17,21;UBERON:0003528,2.32e-16,29;UBERON:0002791,2.32e-16,29;UBERON:0001893,2.32e-16,29;UBERON:0002021,4.18e-16,10;UBERON:0000411,4.18e-16,10;UBERON:0001950,4.18e-16,10;UBERON:0002780,1.39e-13,39;UBERON:0001890,1.39e-13,39;UBERON:0006240,1.39e-13,39;UBERON:0002020,3.42e-13,34;UBERON:0003080,4.21e-13,40;UBERON:0000955,5.29e-13,47;UBERON:0006238,5.29e-13,47;UBERON:0002619,9.64e-13,17;UBERON:0002616,5.20e-12,46;UBERON:0000073,2.22e-10,54;UBERON:0001049,5.83e-10,52;UBERON:0005068,5.83e-10,52;UBERON:0006241,5.83e-10,52;UBERON:0007135,5.83e-10,52;UBERON:0003056,1.10e-09,49;UBERON:0001017,2.35e-09,73;UBERON:0001016,6.31e-09,75;UBERON:0010314,2.65e-08,92;UBERON:0002346,4.58e-07,64;UBERON:0003075,4.58e-07,64;UBERON:0007284,4.58e-07,64;UBERON:0010371,6.00e-07,73 | |||
|phase1_expression=1.28119077683835,0.348975407639361,0,0,1.00179145989269,0.33575854382378,0,5.55230290798778,19.7104211012333,25.2789688427753,6.33506482434368,5.58405112967355,5.13602189793617,6.90621179110079,0,0,0,0.157731082679119,0.137114433605739,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,1.36609096991689,0,0.125896817975577,0.101376931219515,1.28482726513177,0,0.218025156380447,0.219686182734472,0.388859798148567,0.139986421625363,0,3.18786951509699,19.5847778343063,15.7964085596958,0.514518872071894,0,0,0.404632921719196,0,1.26766280701236,0,0,0,0,0,0,1.15265491596466,1.55534418462716,2.16009501330705,1.47227472945967,0.285650984403804,0.441737081903227,0.979926393719632,0.191690942036473,0,0,1.27687338085188,0.921639199537461,0.131886287730194,0.914876436024097,1.56274011167028,0,0,0.763991238884051,0,0.284743361598206,0.372798891650601,0.151452386666368,0.226714680320357,0.579728977403356,0,0,0,0,0,0,0,0,0,1.69012103732017,0,0,0,0,0,0,0,1.8125651855302,4.45326417194474,0.346970653532272,1.21786191324856,0.691846491768175,1.05505848386836,2.23418543557839,2.26199864393416,0,2.4581890676385,0,0.323533699894818,0,0,0,4.09893115816166,0.41889341362691,0,1.43778149407104,0.599902730993408,0.381210681219194,0.898743836428936,2.28750301409313,1.00523481690292,3.82413504423008,3.3243009452943,0.62336413367868,1.62241263067758,0.407357455401265,0,0,0.210441855886474,0,0,0,0.150704817835715,0.136072998302656,0,0.0937017245597288,0.258703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0,0,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0.284163499395593,0.414251545071004,0.234526059981096,0,0.23674473558521,0.393528463494808,0,0.232533944750408,0.268273401399619,0.583826711835847,1.6455984991348,0.985004784474571,0.405344047729279,0.730999937126662,0.658650345873152,0.268412837520744,4.83666881697493,7.20332286654991,0,0,0,0,0,0.201683524623343,0,0,0,0.164698954724011,0.502670417600539,0,0,0,0.216138049874694,0,0.189667900953082,0,0,0,0,0.140271639780637,0.0632365371242573,0.442830443938806,0,0.616985819609003,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505157755894224,0,0,0.369506380333209,0,0.162964976442026,0,0,0,0,0.195133647857799,0.472905432318573,0.664394068946325,0,0.491589944147214,0.518054945597687,0.578596234326046,0,0,0,0,0,0.117211686592203,0,0,0.315508219416257,0,0,0,0.668396022247182,0,0,0.292255857911312,0.395287777946524,3.53453448063988,0.283880170416537,0,0,0,0,0.242780636154981,0,0,0,0.307435147943927,0,0,0,0,0,0,1.70219802876894,0,0.129358683782755,0,0.177340233642274,0.356737635204141,0,0.608929898229199,0.23467170806371,0.63549621259146,0.220528398054962,0.98931751764888,0.161464426695906,0.180938774784468,0,0.328281799490123,0,0.741701208042039,0,0,0,0,0.27338845544205,0,5.60928818979723,4.89830083132803,5.11339903076368,0,0,0,0,0.209088296014469,0,0.404593039154462,0.495920734352016,0.785267825952089,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0.316011120628178,0,0,0,0,0,0.120195449519969,0.147689527174577,0,0,0.201652370273681,0.38983152295901,0.192423683280659,0.350630706544707,0.226730383615211,0,0,0,1.15913756419314,0,0.183151624267265,0,2.50786052017682,3.95326289831947,3.22227665555024,5.15605962095457,4.98374228796694,4.11049511862385,3.0215755895588,2.70009000092722,2.2516060161211,6.79713613476307,4.14208249401456,0.31136204275253,0.399024873401031,0,0.243106717068294,0,0,1.11123363900808,0,0.320919209591815,0.252697211763798,0,0.188626341386076,0.187283014939765,0.256100609619477,0.114870937911227,0.476293691283074,0.231768651889711,0.578727661391115,0,0.147198920134397,0.685738504770831,0.177475806159338,0.238436189947321,0.436039249896986,0.0941093804153306,0.169229215783353,0.182927972872773,0,0.407412341537585,0,0.237270036248348,0.29551344712669,0.409231043169689,0.309873682371932,0.385813221962283,0.249810577937946,0,0.859484216193193,0.956441660344217,0.441182838239031,0 | |||
|short_description=p5@Nr4a3 | |||
}} |
Latest revision as of 01:41, 27 September 2015
Short description: | p5@Nr4a3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Nr4a3_5end |
Coexpression cluster: | MCL_coexpression_mm9:267 |
Association with transcript: | 0bp_to_ENSMUST00000154186, uc008suu.1_5end |
EntrezGene: | Nr4a3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 1.81e-17 | 21 |
cerebral hemisphere | 1.81e-17 | 21 |
pallium | 1.81e-17 | 21 |
brain grey matter | 2.32e-16 | 29 |
regional part of telencephalon | 2.32e-16 | 29 |
telencephalon | 2.32e-16 | 29 |
occipital lobe | 4.18e-16 | 10 |
visual cortex | 4.18e-16 | 10 |
neocortex | 4.18e-16 | 10 |
regional part of forebrain | 1.39e-13 | 39 |
forebrain | 1.39e-13 | 39 |
future forebrain | 1.39e-13 | 39 |
gray matter | 3.42e-13 | 34 |
anterior neural tube | 4.21e-13 | 40 |
brain | 5.29e-13 | 47 |
future brain | 5.29e-13 | 47 |
regional part of cerebral cortex | 9.64e-13 | 17 |
regional part of brain | 5.20e-12 | 46 |
regional part of nervous system | 2.22e-10 | 54 |
neural tube | 5.83e-10 | 52 |
neural rod | 5.83e-10 | 52 |
future spinal cord | 5.83e-10 | 52 |
neural keel | 5.83e-10 | 52 |
pre-chordal neural plate | 1.10e-09 | 49 |
central nervous system | 2.35e-09 | 73 |
nervous system | 6.31e-09 | 75 |
structure with developmental contribution from neural crest | 2.65e-08 | 92 |
neurectoderm | 4.58e-07 | 64 |
neural plate | 4.58e-07 | 64 |
presumptive neural plate | 4.58e-07 | 64 |
ecto-epithelium | 6.00e-07 | 73 |