FFCP PHASE1:Mm9::chr5:28492230..28492257,+: Difference between revisions
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{{FFCP|EntrezGene=13799|HGNC=|MCL_coexpression_id=1201|UniProt=P09066,Q3TZM2|association_with_transcript=0bp_to_ENSMUST00000036177,NM_010134,uc008wtv.1_5end|description=CAGE_peak_1_at_En2_5end|id=chr5:28492230..28492257,+|ontology_enrichment_celltype=CL:0000117!1.11e-07!23;CL:0000337!1.11e-07!23;CL:0002319!6.26e-07!43|ontology_enrichment_celltype_v019_2=CL:0002319,3.65e-10,43;CL:0000221,7.77e-10,44;CL:0000133,7.77e-10,44;CL:0002453,3.30e-09,8;CL:0000117,8.08e-09,23;CL:0000337,8.08e-09,23;CL:0000120,9.28e-08,3;CL:0002610,3.39e-07,3;CL:0000333,3.43e-07,10;CL:0000095,3.43e-07,10;CL:0000243,3.43e-07,10;CL:0000123,3.43e-07,10;CL:0000125,3.43e-07,10;CL:0000030,3.43e-07,10;CL:0000339,3.43e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.91e-12!73;UBERON:0005743!1.91e-12!73;UBERON:0000073!9.37e-12!75;UBERON:0001016!9.37e-12!75;UBERON:0000955!1.20e-10!50;UBERON:0006238!1.20e-10!50;UBERON:0002616!3.81e-10!49;UBERON:0001049!1.66e-08!52;UBERON:0005068!1.66e-08!52;UBERON:0006241!1.66e-08!52;UBERON:0007135!1.66e-08!52;UBERON:0000033!1.24e-07!63;UBERON:0002298!6.89e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.48e-14,73;UBERON:0001016,1.27e-13,75;UBERON:0004121,2.50e-09,95;UBERON:0000924,2.50e-09,95;UBERON:0006601,2.50e-09,95;UBERON:0000073,7.34e-09,54;UBERON:0004733,9.70e-09,6;UBERON:0004732,9.70e-09,6;UBERON:0002028,9.70e-09,6;UBERON:0007277,9.70e-09,6;UBERON:0002950,1.27e-08,4;UBERON:0001891,1.27e-08,4;UBERON:0009616,1.27e-08,4;UBERON:0010286,1.27e-08,4;UBERON:0002616,2.73e-07,46;UBERON:0004684,3.39e-07,3;UBERON:0002275,3.39e-07,3;UBERON:0000955,4.66e-07,47;UBERON:0006238,4.66e-07,47;UBERON:0001049,6.24e-07,52;UBERON:0005068,6.24e-07,52;UBERON:0006241,6.24e-07,52;UBERON:0007135,6.24e-07,52|phase1_expression=0,0,0,0,0,0,0,0,0.140788722151667,0.468129052643987,0,0,0,0,0,0,0,0,0,0,5.18764069921526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0,0,2.34717403304412,0,0.878744730937887,2.72201858703997,6.01941612989059,30.188038516644,0,0,0,0,0,0,73.0362423703148,96.27635822751,67.186128771655,1.0165335962074,0,0,0,0,10.4860038681442,5.37905627450176,0,0.135005938331691,0.210324961351382,0.571301968807607,0.662605622854841,0,0.191690942036473,0,7.70811166995721,3.44755812830007,7.98753972932466,1.71452174049252,1.09785172322892,0,15.355064945076,1.12552522006336,4.27835093775068,0,0,0,0,0,0.289864488701678,0,0,0,0,0,1.12355536105401,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0.173485326766136,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,99.2526901869145,112.682328265639,0,0,0,0,7.9389038884556,0.915001205637253,0,0,0.255715457330331,2.90903262383384,2.43361894601636,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610953983535943,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0871576698413,2.34423373184406,0,0.757412781613119,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08036656418786,0.517434735131018,0,0,0.356737635204141,0,0,0,0.21183207086382,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0.241584120826006,0.288030006257865,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0.183151624267265,0.214368379079066,0,1.12950368523413,0,0,0.171853182343688,0.685082519770642,0,0,0.900642406448441,0,0,6.95375228813984,3.59122386060928,3.75613932659095,2.18796045361465,0.628839487883947,0.367687016900028,1.77797382241292,0.412070114477788,0.64183841918363,0.758091635291392,0.25347929989024,1.50901073108861,1.31098110457835,0.576226371643824,0.976402972245426,2.85776214769844,1.0429589335037,0.578727661391115,0.412085900803307,1.76638704161277,1.71434626192708,0.532427418478012,0.953744759789284,1.59881058295561,0.564656282491984,0.423073039458382,0.548783918618318,0.263069711437843,0.679020569229309,1.12228454331548,1.18635018124174,1.37906275325789,1.22769312950907,0.619747364743864,0.578719832943424,2.99772693525535,0.467863216890817,0.429742108096597,0,0,0|short_description=p1@En2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13799 | |||
|HGNC= | |||
|MCL_coexpression_id=1201 | |||
|TSSclassifier=NA | |||
|UniProt=P09066,Q3TZM2 | |||
|association_with_transcript=0bp_to_ENSMUST00000036177,NM_010134,uc008wtv.1_5end | |||
|cluster_id=chr5:28492230..28492257,+ | |||
|description=CAGE_peak_1_at_En2_5end | |||
|id=chr5:28492230..28492257,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.11e-07!23;CL:0000337!1.11e-07!23;CL:0002319!6.26e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.65e-10,43;CL:0000221,7.77e-10,44;CL:0000133,7.77e-10,44;CL:0002453,3.30e-09,8;CL:0000117,8.08e-09,23;CL:0000337,8.08e-09,23;CL:0000120,9.28e-08,3;CL:0002610,3.39e-07,3;CL:0000333,3.43e-07,10;CL:0000095,3.43e-07,10;CL:0000243,3.43e-07,10;CL:0000123,3.43e-07,10;CL:0000125,3.43e-07,10;CL:0000030,3.43e-07,10;CL:0000339,3.43e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.91e-12!73;UBERON:0005743!1.91e-12!73;UBERON:0000073!9.37e-12!75;UBERON:0001016!9.37e-12!75;UBERON:0000955!1.20e-10!50;UBERON:0006238!1.20e-10!50;UBERON:0002616!3.81e-10!49;UBERON:0001049!1.66e-08!52;UBERON:0005068!1.66e-08!52;UBERON:0006241!1.66e-08!52;UBERON:0007135!1.66e-08!52;UBERON:0000033!1.24e-07!63;UBERON:0002298!6.89e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.48e-14,73;UBERON:0001016,1.27e-13,75;UBERON:0004121,2.50e-09,95;UBERON:0000924,2.50e-09,95;UBERON:0006601,2.50e-09,95;UBERON:0000073,7.34e-09,54;UBERON:0004733,9.70e-09,6;UBERON:0004732,9.70e-09,6;UBERON:0002028,9.70e-09,6;UBERON:0007277,9.70e-09,6;UBERON:0002950,1.27e-08,4;UBERON:0001891,1.27e-08,4;UBERON:0009616,1.27e-08,4;UBERON:0010286,1.27e-08,4;UBERON:0002616,2.73e-07,46;UBERON:0004684,3.39e-07,3;UBERON:0002275,3.39e-07,3;UBERON:0000955,4.66e-07,47;UBERON:0006238,4.66e-07,47;UBERON:0001049,6.24e-07,52;UBERON:0005068,6.24e-07,52;UBERON:0006241,6.24e-07,52;UBERON:0007135,6.24e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.140788722151667,0.468129052643987,0,0,0,0,0,0,0,0,0,0,5.18764069921526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0,0,2.34717403304412,0,0.878744730937887,2.72201858703997,6.01941612989059,30.188038516644,0,0,0,0,0,0,73.0362423703148,96.27635822751,67.186128771655,1.0165335962074,0,0,0,0,10.4860038681442,5.37905627450176,0,0.135005938331691,0.210324961351382,0.571301968807607,0.662605622854841,0,0.191690942036473,0,7.70811166995721,3.44755812830007,7.98753972932466,1.71452174049252,1.09785172322892,0,15.355064945076,1.12552522006336,4.27835093775068,0,0,0,0,0,0.289864488701678,0,0,0,0,0,1.12355536105401,0,0,0,0,0,0,0,0,0,0,0.5709193985953,0,0,0.173485326766136,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,99.2526901869145,112.682328265639,0,0,0,0,7.9389038884556,0.915001205637253,0,0,0.255715457330331,2.90903262383384,2.43361894601636,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610953983535943,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0871576698413,2.34423373184406,0,0.757412781613119,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08036656418786,0.517434735131018,0,0,0.356737635204141,0,0,0,0.21183207086382,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0.241584120826006,0.288030006257865,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0.183151624267265,0.214368379079066,0,1.12950368523413,0,0,0.171853182343688,0.685082519770642,0,0,0.900642406448441,0,0,6.95375228813984,3.59122386060928,3.75613932659095,2.18796045361465,0.628839487883947,0.367687016900028,1.77797382241292,0.412070114477788,0.64183841918363,0.758091635291392,0.25347929989024,1.50901073108861,1.31098110457835,0.576226371643824,0.976402972245426,2.85776214769844,1.0429589335037,0.578727661391115,0.412085900803307,1.76638704161277,1.71434626192708,0.532427418478012,0.953744759789284,1.59881058295561,0.564656282491984,0.423073039458382,0.548783918618318,0.263069711437843,0.679020569229309,1.12228454331548,1.18635018124174,1.37906275325789,1.22769312950907,0.619747364743864,0.578719832943424,2.99772693525535,0.467863216890817,0.429742108096597,0,0,0 | |||
|short_description=p1@En2 | |||
}} |
Latest revision as of 21:24, 25 September 2015
Short description: | p1@En2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_En2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1201 |
Association with transcript: | 0bp_to_ENSMUST00000036177, NM_010134, uc008wtv.1_5end |
EntrezGene: | En2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.65e-10 | 43 |
ectodermal cell | 7.77e-10 | 44 |
neurectodermal cell | 7.77e-10 | 44 |
oligodendrocyte precursor cell | 3.30e-09 | 8 |
CNS neuron (sensu Vertebrata) | 8.08e-09 | 23 |
neuroblast (sensu Vertebrata) | 8.08e-09 | 23 |
granule cell | 9.28e-08 | 3 |
raphe nuclei neuron | 3.39e-07 | 3 |
migratory neural crest cell | 3.43e-07 | 10 |
neuron associated cell | 3.43e-07 | 10 |
glial cell (sensu Vertebrata) | 3.43e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 3.43e-07 | 10 |
glial cell | 3.43e-07 | 10 |
glioblast | 3.43e-07 | 10 |
glioblast (sensu Vertebrata) | 3.43e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.48e-14 | 73 |
nervous system | 1.27e-13 | 75 |
ectoderm-derived structure | 2.50e-09 | 95 |
ectoderm | 2.50e-09 | 95 |
presumptive ectoderm | 2.50e-09 | 95 |
regional part of nervous system | 7.34e-09 | 54 |
segmental subdivision of hindbrain | 9.70e-09 | 6 |
segmental subdivision of nervous system | 9.70e-09 | 6 |
hindbrain | 9.70e-09 | 6 |
presumptive hindbrain | 9.70e-09 | 6 |
regional part of midbrain | 1.27e-08 | 4 |
midbrain | 1.27e-08 | 4 |
presumptive midbrain | 1.27e-08 | 4 |
midbrain neural tube | 1.27e-08 | 4 |
regional part of brain | 2.73e-07 | 46 |
raphe nuclei | 3.39e-07 | 3 |
reticular formation | 3.39e-07 | 3 |
brain | 4.66e-07 | 47 |
future brain | 4.66e-07 | 47 |
neural tube | 6.24e-07 | 52 |
neural rod | 6.24e-07 | 52 |
future spinal cord | 6.24e-07 | 52 |
neural keel | 6.24e-07 | 52 |