FFCP PHASE1:Mm9::chr6:126690645..126690699,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=16494|HGNC=|MCL_coexpression_id=1605|UniProt=Q61923|association_with_transcript=0bp_to_ENSMUST00000040751,NM_013568,uc009dvc.2,uc009dvd.2_5end|description=CAGE_peak_1_at_Kcna6_5end|id=chr6:126690645..126690699,-|ontology_enrichment_celltype=CL:0000221!4.55e-19!44;CL:0000133!4.55e-19!44;CL:0002319!2.21e-18!43;CL:0000540!2.18e-17!33;CL:0000047!2.18e-17!33;CL:0000031!2.18e-17!33;CL:0000404!2.18e-17!33;CL:0000055!1.12e-12!50;CL:0000393!6.04e-12!39;CL:0000211!6.04e-12!39;CL:0000117!4.97e-11!23;CL:0000337!4.97e-11!23;CL:0000107!2.78e-07!9|ontology_enrichment_celltype_v019_2=CL:0000221,7.84e-20,44;CL:0000133,7.84e-20,44;CL:0002319,4.35e-19,43;CL:0000540,6.35e-19,33;CL:0000047,6.35e-19,33;CL:0000031,6.35e-19,33;CL:0000404,6.35e-19,33;CL:0000393,2.87e-13,39;CL:0000211,2.87e-13,39;CL:0000117,6.01e-12,23;CL:0000337,6.01e-12,23;CL:0000107,7.70e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.56e-33!75;UBERON:0001016!8.56e-33!75;UBERON:0001017!1.41e-31!73;UBERON:0005743!1.41e-31!73;UBERON:0004121!1.97e-30!102;UBERON:0000924!1.97e-30!102;UBERON:0006601!1.97e-30!102;UBERON:0002346!2.20e-22!71;UBERON:0003075!2.20e-22!71;UBERON:0007284!2.20e-22!71;UBERON:0000033!1.11e-19!63;UBERON:0001049!1.17e-19!52;UBERON:0005068!1.17e-19!52;UBERON:0006241!1.17e-19!52;UBERON:0007135!1.17e-19!52;UBERON:0000955!3.66e-18!50;UBERON:0006238!3.66e-18!50;UBERON:0002616!8.93e-18!49;UBERON:0002020!5.21e-16!34;UBERON:0003056!1.36e-15!49;UBERON:0003080!1.66e-14!40;UBERON:0002780!7.35e-14!39;UBERON:0001890!7.35e-14!39;UBERON:0006240!7.35e-14!39;UBERON:0002791!6.89e-13!29;UBERON:0003528!6.89e-13!29;UBERON:0001893!6.89e-13!29;UBERON:0000153!7.43e-10!94;UBERON:0000468!2.27e-09!333;UBERON:0000956!5.12e-09!21;UBERON:0001869!5.12e-09!21;UBERON:0000203!5.12e-09!21;UBERON:0007811!2.08e-08!86;UBERON:0002619!2.44e-08!17;UBERON:0000010!3.56e-08!11;UBERON:0002410!2.78e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.46e-35,75;UBERON:0001017,9.49e-34,73;UBERON:0004121,3.86e-31,95;UBERON:0000924,3.86e-31,95;UBERON:0006601,3.86e-31,95;UBERON:0002346,3.93e-24,64;UBERON:0003075,3.93e-24,64;UBERON:0007284,3.93e-24,64;UBERON:0000073,3.20e-22,54;UBERON:0010371,8.78e-22,73;UBERON:0001049,9.59e-21,52;UBERON:0005068,9.59e-21,52;UBERON:0006241,9.59e-21,52;UBERON:0007135,9.59e-21,52;UBERON:0002020,2.07e-17,34;UBERON:0003056,3.73e-17,49;UBERON:0000955,4.81e-17,47;UBERON:0006238,4.81e-17,47;UBERON:0002616,1.24e-16,46;UBERON:0003080,5.69e-16,40;UBERON:0010314,2.32e-15,92;UBERON:0002780,2.93e-15,39;UBERON:0001890,2.93e-15,39;UBERON:0006240,2.93e-15,39;UBERON:0003528,5.50e-14,29;UBERON:0002791,5.50e-14,29;UBERON:0001893,5.50e-14,29;UBERON:0000956,9.68e-10,21;UBERON:0001869,9.68e-10,21;UBERON:0000203,9.68e-10,21;UBERON:0002619,5.36e-09,17;UBERON:0000010,8.12e-09,11;UBERON:0002410,7.70e-08,9;UBERON:0002021,5.33e-07,10;UBERON:0000411,5.33e-07,10;UBERON:0001950,5.33e-07,10|phase1_expression=6.72625157840135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21112554392781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.872100625521786,4.83309602015838,3.11087838518853,1.39986421625363,1.43752564364972,0,0,0,0.514518872071894,0.286533439938757,0,7.28339259094552,7.93486468908049,10.1413024560989,1.35537812827653,0.889294796111139,0,0,0,14.9800055259202,14.2160772968975,3.00699875694585,3.64516033495565,2.94454945891935,28.2794474559766,22.5285911770646,3.67472397644862,3.83381884072945,5.51531271966013,18.7196997698961,21.7068474744819,26.2667171868176,10.1552441552249,9.69769022185542,5.2091337055676,16.7509799400829,14.6318278608237,19.8637722109853,26.8112012781038,22.2099822046601,9.13357284543973,5.37655972665607,21.2356083900067,0,0,0,0,0,0,0.702222100658759,0,0,0,24.5067550411424,0,0,0,0,0,0,0.45673551887624,0,0.593768556259299,2.77576522825817,3.34912026143355,2.53677046981664,3.3158980921577,3.05730638552832,0.251333182659351,0.247194967734374,0.578397427679647,0,3.72063754879041,1.54589062922275,0.969750506270444,1.86391761218122,8.49064311333487,14.0329293565015,0,0,0,0,24.7154555017957,15.0975198930147,12.3141265070607,14.0797699355744,16.8772201838018,22.0255327233134,18.6577452527921,2.24046600470696,1.11966273549084,0,1.47309299120532,2.60240885925407,2.5289231487682,1.62055916824814,3.31550599238573,3.53789795586905,3.71529788826064,4.12287588062807,6.72628763921441,4.52692785158969,3.21480336285293,6.33424046990216,3.94552318369635,4.17070873838397,6.61679116392116,4.52720700097476,2.38841120182192,0,0,0,1.86413195281952,1.17263029990548,0.540186184383045,1.65721314909647,0.983821158737019,1.07986979021165,0.930135779001631,0.268273401399619,1.28441876603886,0.658239399653922,0.656669856316381,0.891756905004413,0.584799949701329,0.219550115291051,0.402619256281115,10.3042074796422,9.98174740079059,0,0.793351699990633,1.06644125267617,1.62565670302307,1.41754207454303,0.80673409849337,0.889512175379481,2.09248188723815,0.949058123089023,1.31759163779209,1.75934646160189,0.994782360205754,1.55971269695296,0,0.864552199498777,0.597423819763102,1.13800740571849,1.48523066392647,2.25415471346161,1.01825663922657,2.13347735884388,1.96380295692892,2.02356918797623,0.590440591918409,0.470996183524124,0.370191491765402,0,0.500535317148282,0.589676985339609,0.224862112384854,0.202860121388503,0,0.25462585178142,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0.482443521363367,0.184753190166605,1.51593129416388,2.11854469374634,1.18821560042632,0.704070744865506,0.837531287209079,0.952174563544055,0.975668239288994,0.630540576424764,1.32878813789265,1.11618338060241,0.491589944147214,0.518054945597687,0.144649058581512,0,0,0,0,21.8348802383397,18.6366581681603,0,0.504941854408746,10.0962630213202,20.3028147034252,26.7125013188671,43.2533524294119,41.4405533793253,43.876862272269,24.2886421004937,25.4262596382841,33.5994611254545,5.14114106274891,0.425820255624806,4.27357448801413,3.90928702448583,0.329940245945071,0,1.21390318077491,0.906970670894253,1.32023555829129,2.65771703592696,2.45948118355142,2.32585463851399,1.09060118843252,2.85197902707777,1.26414703174326,1.05418608574999,0,0,2.16073312837572,1.94038025674132,3.42939256050548,2.48276327099183,3.0322698992352,5.59466670047211,6.08929898229199,1.17335854031855,0.21183207086382,1.10264199027481,1.31909002353184,0.968786560175433,1.02531972377865,2.02932984805332,0.656563598980245,0,19.655082013114,0,1.65109494370578,0.370389054739423,0,0,0.228778173206523,0,0,0,0,3.79603192297362,2.43983360552218,1.51207477150522,1.67270636811575,1.09181281873089,1.75323650300267,1.40510874733071,0.785267825952089,0.388844919875379,0.621339313086926,0,3.73791365109947,3.14371131868485,3.11121901350476,2.97067593998782,2.36538575687089,2.8165737274981,2.99470085141085,0.943734099831398,0.483168241652012,0,0,1.41907650703115,1.02710957164827,0.129920822977795,0.716106782669926,0.596044064343795,0.360586348559907,0,0.403865799792591,0.304827226619999,0,0.0974578807397524,0,0.116876902181569,0.680191150845634,0.221985953374065,0.0897138566094757,0,1.15913756419314,0,0.549454872801795,0.214368379079066,0,14.1187960654267,18.8733346967943,17.1868654031819,13.4045482228076,16.4419804744954,11.3309084608455,14.8504950050997,13.0593148935024,14.9536994964788,15.5328093525546,1.24544817101012,4.78829848081237,4.43907374960749,3.40349403895612,2.72497111416377,3.8607136774503,4.4449345560323,3.5025959730612,4.1719497246936,2.52697211763797,4.81610669791456,3.9611531691076,3.183811253976,4.41773551593598,3.27382173046996,4.28664322154766,3.94006708212509,2.70072908649187,3.29668720642645,3.97437084362873,3.42869252385415,2.30718548007139,3.33810665926249,2.90692833264657,3.85848459702856,3.38458431566706,2.0122077016005,3.6829759601298,4.07412341537585,2.24456908663095,3.79632057997357,4.23569274214923,3.27384834535751,3.87342102964915,3.47231899766054,11.2414760072076,5.38042699424439,4.51229213501426,4.3996316375834,7.94129108830256,3.70988536992674|short_description=p1@Kcna6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16494 | |||
|HGNC= | |||
|MCL_coexpression_id=1605 | |||
|TSSclassifier=NA | |||
|UniProt=Q61923 | |||
|association_with_transcript=0bp_to_ENSMUST00000040751,NM_013568,uc009dvc.2,uc009dvd.2_5end | |||
|cluster_id=chr6:126690645..126690699,- | |||
|description=CAGE_peak_1_at_Kcna6_5end | |||
|id=chr6:126690645..126690699,- | |||
|ontology_enrichment_celltype=CL:0000221!4.55e-19!44;CL:0000133!4.55e-19!44;CL:0002319!2.21e-18!43;CL:0000540!2.18e-17!33;CL:0000047!2.18e-17!33;CL:0000031!2.18e-17!33;CL:0000404!2.18e-17!33;CL:0000055!1.12e-12!50;CL:0000393!6.04e-12!39;CL:0000211!6.04e-12!39;CL:0000117!4.97e-11!23;CL:0000337!4.97e-11!23;CL:0000107!2.78e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.84e-20,44;CL:0000133,7.84e-20,44;CL:0002319,4.35e-19,43;CL:0000540,6.35e-19,33;CL:0000047,6.35e-19,33;CL:0000031,6.35e-19,33;CL:0000404,6.35e-19,33;CL:0000393,2.87e-13,39;CL:0000211,2.87e-13,39;CL:0000117,6.01e-12,23;CL:0000337,6.01e-12,23;CL:0000107,7.70e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.56e-33!75;UBERON:0001016!8.56e-33!75;UBERON:0001017!1.41e-31!73;UBERON:0005743!1.41e-31!73;UBERON:0004121!1.97e-30!102;UBERON:0000924!1.97e-30!102;UBERON:0006601!1.97e-30!102;UBERON:0002346!2.20e-22!71;UBERON:0003075!2.20e-22!71;UBERON:0007284!2.20e-22!71;UBERON:0000033!1.11e-19!63;UBERON:0001049!1.17e-19!52;UBERON:0005068!1.17e-19!52;UBERON:0006241!1.17e-19!52;UBERON:0007135!1.17e-19!52;UBERON:0000955!3.66e-18!50;UBERON:0006238!3.66e-18!50;UBERON:0002616!8.93e-18!49;UBERON:0002020!5.21e-16!34;UBERON:0003056!1.36e-15!49;UBERON:0003080!1.66e-14!40;UBERON:0002780!7.35e-14!39;UBERON:0001890!7.35e-14!39;UBERON:0006240!7.35e-14!39;UBERON:0002791!6.89e-13!29;UBERON:0003528!6.89e-13!29;UBERON:0001893!6.89e-13!29;UBERON:0000153!7.43e-10!94;UBERON:0000468!2.27e-09!333;UBERON:0000956!5.12e-09!21;UBERON:0001869!5.12e-09!21;UBERON:0000203!5.12e-09!21;UBERON:0007811!2.08e-08!86;UBERON:0002619!2.44e-08!17;UBERON:0000010!3.56e-08!11;UBERON:0002410!2.78e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.46e-35,75;UBERON:0001017,9.49e-34,73;UBERON:0004121,3.86e-31,95;UBERON:0000924,3.86e-31,95;UBERON:0006601,3.86e-31,95;UBERON:0002346,3.93e-24,64;UBERON:0003075,3.93e-24,64;UBERON:0007284,3.93e-24,64;UBERON:0000073,3.20e-22,54;UBERON:0010371,8.78e-22,73;UBERON:0001049,9.59e-21,52;UBERON:0005068,9.59e-21,52;UBERON:0006241,9.59e-21,52;UBERON:0007135,9.59e-21,52;UBERON:0002020,2.07e-17,34;UBERON:0003056,3.73e-17,49;UBERON:0000955,4.81e-17,47;UBERON:0006238,4.81e-17,47;UBERON:0002616,1.24e-16,46;UBERON:0003080,5.69e-16,40;UBERON:0010314,2.32e-15,92;UBERON:0002780,2.93e-15,39;UBERON:0001890,2.93e-15,39;UBERON:0006240,2.93e-15,39;UBERON:0003528,5.50e-14,29;UBERON:0002791,5.50e-14,29;UBERON:0001893,5.50e-14,29;UBERON:0000956,9.68e-10,21;UBERON:0001869,9.68e-10,21;UBERON:0000203,9.68e-10,21;UBERON:0002619,5.36e-09,17;UBERON:0000010,8.12e-09,11;UBERON:0002410,7.70e-08,9;UBERON:0002021,5.33e-07,10;UBERON:0000411,5.33e-07,10;UBERON:0001950,5.33e-07,10 | |||
|phase1_expression=6.72625157840135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21112554392781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.872100625521786,4.83309602015838,3.11087838518853,1.39986421625363,1.43752564364972,0,0,0,0.514518872071894,0.286533439938757,0,7.28339259094552,7.93486468908049,10.1413024560989,1.35537812827653,0.889294796111139,0,0,0,14.9800055259202,14.2160772968975,3.00699875694585,3.64516033495565,2.94454945891935,28.2794474559766,22.5285911770646,3.67472397644862,3.83381884072945,5.51531271966013,18.7196997698961,21.7068474744819,26.2667171868176,10.1552441552249,9.69769022185542,5.2091337055676,16.7509799400829,14.6318278608237,19.8637722109853,26.8112012781038,22.2099822046601,9.13357284543973,5.37655972665607,21.2356083900067,0,0,0,0,0,0,0.702222100658759,0,0,0,24.5067550411424,0,0,0,0,0,0,0.45673551887624,0,0.593768556259299,2.77576522825817,3.34912026143355,2.53677046981664,3.3158980921577,3.05730638552832,0.251333182659351,0.247194967734374,0.578397427679647,0,3.72063754879041,1.54589062922275,0.969750506270444,1.86391761218122,8.49064311333487,14.0329293565015,0,0,0,0,24.7154555017957,15.0975198930147,12.3141265070607,14.0797699355744,16.8772201838018,22.0255327233134,18.6577452527921,2.24046600470696,1.11966273549084,0,1.47309299120532,2.60240885925407,2.5289231487682,1.62055916824814,3.31550599238573,3.53789795586905,3.71529788826064,4.12287588062807,6.72628763921441,4.52692785158969,3.21480336285293,6.33424046990216,3.94552318369635,4.17070873838397,6.61679116392116,4.52720700097476,2.38841120182192,0,0,0,1.86413195281952,1.17263029990548,0.540186184383045,1.65721314909647,0.983821158737019,1.07986979021165,0.930135779001631,0.268273401399619,1.28441876603886,0.658239399653922,0.656669856316381,0.891756905004413,0.584799949701329,0.219550115291051,0.402619256281115,10.3042074796422,9.98174740079059,0,0.793351699990633,1.06644125267617,1.62565670302307,1.41754207454303,0.80673409849337,0.889512175379481,2.09248188723815,0.949058123089023,1.31759163779209,1.75934646160189,0.994782360205754,1.55971269695296,0,0.864552199498777,0.597423819763102,1.13800740571849,1.48523066392647,2.25415471346161,1.01825663922657,2.13347735884388,1.96380295692892,2.02356918797623,0.590440591918409,0.470996183524124,0.370191491765402,0,0.500535317148282,0.589676985339609,0.224862112384854,0.202860121388503,0,0.25462585178142,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0.482443521363367,0.184753190166605,1.51593129416388,2.11854469374634,1.18821560042632,0.704070744865506,0.837531287209079,0.952174563544055,0.975668239288994,0.630540576424764,1.32878813789265,1.11618338060241,0.491589944147214,0.518054945597687,0.144649058581512,0,0,0,0,21.8348802383397,18.6366581681603,0,0.504941854408746,10.0962630213202,20.3028147034252,26.7125013188671,43.2533524294119,41.4405533793253,43.876862272269,24.2886421004937,25.4262596382841,33.5994611254545,5.14114106274891,0.425820255624806,4.27357448801413,3.90928702448583,0.329940245945071,0,1.21390318077491,0.906970670894253,1.32023555829129,2.65771703592696,2.45948118355142,2.32585463851399,1.09060118843252,2.85197902707777,1.26414703174326,1.05418608574999,0,0,2.16073312837572,1.94038025674132,3.42939256050548,2.48276327099183,3.0322698992352,5.59466670047211,6.08929898229199,1.17335854031855,0.21183207086382,1.10264199027481,1.31909002353184,0.968786560175433,1.02531972377865,2.02932984805332,0.656563598980245,0,19.655082013114,0,1.65109494370578,0.370389054739423,0,0,0.228778173206523,0,0,0,0,3.79603192297362,2.43983360552218,1.51207477150522,1.67270636811575,1.09181281873089,1.75323650300267,1.40510874733071,0.785267825952089,0.388844919875379,0.621339313086926,0,3.73791365109947,3.14371131868485,3.11121901350476,2.97067593998782,2.36538575687089,2.8165737274981,2.99470085141085,0.943734099831398,0.483168241652012,0,0,1.41907650703115,1.02710957164827,0.129920822977795,0.716106782669926,0.596044064343795,0.360586348559907,0,0.403865799792591,0.304827226619999,0,0.0974578807397524,0,0.116876902181569,0.680191150845634,0.221985953374065,0.0897138566094757,0,1.15913756419314,0,0.549454872801795,0.214368379079066,0,14.1187960654267,18.8733346967943,17.1868654031819,13.4045482228076,16.4419804744954,11.3309084608455,14.8504950050997,13.0593148935024,14.9536994964788,15.5328093525546,1.24544817101012,4.78829848081237,4.43907374960749,3.40349403895612,2.72497111416377,3.8607136774503,4.4449345560323,3.5025959730612,4.1719497246936,2.52697211763797,4.81610669791456,3.9611531691076,3.183811253976,4.41773551593598,3.27382173046996,4.28664322154766,3.94006708212509,2.70072908649187,3.29668720642645,3.97437084362873,3.42869252385415,2.30718548007139,3.33810665926249,2.90692833264657,3.85848459702856,3.38458431566706,2.0122077016005,3.6829759601298,4.07412341537585,2.24456908663095,3.79632057997357,4.23569274214923,3.27384834535751,3.87342102964915,3.47231899766054,11.2414760072076,5.38042699424439,4.51229213501426,4.3996316375834,7.94129108830256,3.70988536992674 | |||
|short_description=p1@Kcna6 | |||
}} |
Latest revision as of 17:29, 26 September 2015
Short description: | p1@Kcna6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kcna6_5end |
Coexpression cluster: | MCL_coexpression_mm9:1605 |
Association with transcript: | 0bp_to_ENSMUST00000040751, NM_013568, uc009dvc.2, uc009dvd.2_5end |
EntrezGene: | Kcna6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.84e-20 | 44 |
neurectodermal cell | 7.84e-20 | 44 |
neural cell | 4.35e-19 | 43 |
neuron | 6.35e-19 | 33 |
neuronal stem cell | 6.35e-19 | 33 |
neuroblast | 6.35e-19 | 33 |
electrically signaling cell | 6.35e-19 | 33 |
electrically responsive cell | 2.87e-13 | 39 |
electrically active cell | 2.87e-13 | 39 |
CNS neuron (sensu Vertebrata) | 6.01e-12 | 23 |
neuroblast (sensu Vertebrata) | 6.01e-12 | 23 |
autonomic neuron | 7.70e-08 | 9 |