FFCP PHASE1:Mm9::chr7:52105222..52105237,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=366|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:52105222..52105237,-|id=chr7:52105222..52105237,-|ontology_enrichment_celltype=CL:0000063!5.37e-07!66|ontology_enrichment_celltype_v019_2=CL:0002250,1.26e-12,3;CL:0002563,1.04e-10,9;CL:0002251,1.04e-10,9;CL:0000066,1.09e-08,25;CL:0000034,3.20e-08,97;CL:0000624,4.16e-08,8;CL:0000723,9.34e-08,91;CL:0000048,9.34e-08,91;CL:0000791,3.28e-07,9;CL:0000789,3.28e-07,9;CL:0002420,3.28e-07,9;CL:0002419,3.28e-07,9;CL:0000790,3.28e-07,9;CL:0000355,8.48e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000485,4.16e-12,11;UBERON:0003350,1.04e-10,9;UBERON:0004808,1.04e-10,9;UBERON:0001277,1.04e-10,9;UBERON:0007524,3.13e-08,11;UBERON:0003077,3.13e-08,11;UBERON:0007285,3.13e-08,11;UBERON:0000490,1.74e-07,66;UBERON:0000055,1.86e-07,5;UBERON:0007500,1.86e-07,5;UBERON:0001981,1.86e-07,5;UBERON:0002049,1.86e-07,5;UBERON:0007798,1.86e-07,5;UBERON:0004537,1.86e-07,5;UBERON:0006965,1.86e-07,5;UBERON:0001242,2.50e-07,13;UBERON:0001262,2.50e-07,13;UBERON:0004786,2.50e-07,13;UBERON:0001134,8.48e-07,9;UBERON:0002036,8.48e-07,9;UBERON:0002385,8.48e-07,9;UBERON:0000486,8.48e-07,9;UBERON:0007503,8.48e-07,9;UBERON:0001015,8.48e-07,9;UBERON:0002329,8.48e-07,9;UBERON:0003082,8.48e-07,9;UBERON:0003059,8.48e-07,9;UBERON:0007282,8.48e-07,9;UBERON:0004290,8.48e-07,9;UBERON:0009618,8.48e-07,9|phase1_expression=1.28119077683835,1.39590163055744,0,2.41971369045464,0,0.839396359559449,0.700837921786577,4.26106967357202,0.703943610758334,0.468129052643987,0,0,3.42401459862411,3.14713448708391,0,0.202475267389826,0.699561878128147,0,0.137114433605739,0.42438965179803,0.340173160604279,0.397163804803541,0,0,0,1.14846392823004,0.86152399231815,0.430942465371778,0,0,0,0.635030673459631,1.23012957516914,0,6.93243887403059,1.82858109894342,5.51257261908397,1.67412652294763,2.3440060335714,0,4.1176204162171,0,0,1.76255545165808,1.62203089951223,0.917733760808408,0,0.218025156380447,0,0.194429899074283,0,0,0.838913030288682,2.17608642603403,0.672187598284928,0,0.573066879877513,0,0,0,0,1.35537812827653,0,0.449949858640699,0,0,0.299600110518405,0,0,0,0,0,0,0,0.0958454710182364,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0.302286240427142,12.7540375028738,0,0,0,0,0.448026887097336,0.140444420131752,0.170430322578058,0.259786004602869,0,0.422530259330042,0,0,0,0,0.506719730950197,0,0,0,0.148442139064825,0.173485326766136,0,0.230615497256059,0,0.23517741427141,0.125666591329675,0.247194967734374,0.144599356919912,0,0.485300549842228,0,0,0,0,0,0,0.958520996047362,0.599902730993408,0.381210681219194,0,0,0.125654352112864,0.173824320192276,0,0,0.162241263067758,0.305518091550949,0.124406970610093,0,0.420883711772948,0.130120442962704,0,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0.258703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0,0,0.348252166522167,0,0.199034266818493,0,0.772043721344145,0.284163499395593,0,0.234526059981096,0.180062061461015,0.23674473558521,0.196764231747404,0,0.465067889500816,0,0.700592054203017,0,0.492502392237286,0.243206428637567,0.292399974850665,0.219550115291051,0.536825675041487,0,0.308713837137853,0,0.264450566663544,0.639864751605702,0.232236671860439,0.128867461322093,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0.948339504765408,0.228497025219458,1.1270773567308,0.203651327845314,0,0.210407459670956,0,0,0.156998727841375,0.246794327843601,0,0,0,0,0,0.482354319504834,0.50925170356284,0,0.324270453550071,0,0,0.372140947668503,0,0,0.179397413521912,0.482443521363367,0,0.189491411770485,0.651859905768103,0,0.704070744865506,0,0,0,0.630540576424764,0,0.159454768657487,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0.252470927204373,0.94652465824877,0.390438744296638,0.430846795465598,0,0,0.566153061577665,1.21443210502468,0.584511715822624,0,0,0,0.178065603667255,0.325773918707152,0.164970122972535,0,0.242780636154981,0.302323556964751,0,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0.258717367565509,0.214337035031592,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0.441056796109924,0.16488625294148,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0.185194527369712,0.188368457004691,0,0,0.339956859987711,1.95932033253121,0.138199973804424,0,0.158167996790568,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0,0,0.259229946583586,0,2.25477175473676,0.299033092087958,0,0,0,0.168956125490778,0.117357238645754,0.2604087696879,0.209718688851422,0.241584120826006,1.15212002503146,0,0.202725215290164,0.102710957164827,0,0,0.39736270956253,0.120195449519969,0,0.100966449948148,0,0,0,0.0962118416403295,0,0.680191150845634,0,0.0897138566094757,0,0.772758376128762,0.187682475451182,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0.453142408984205,0,0.207574695168353,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0,0,0,0,0,0,0.0936415074698824,0.128050304809739,0,0,0,0,0,0,0,0.177475806159338,0.238436189947321,0,0,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0.214871054048298,0,0.441182838239031,0|short_description=p@chr7:52105222..52105237,-}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=366 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:52105222..52105237,- | |||
|description=CAGE_peak_at_chr7:52105222..52105237,- | |||
|id=chr7:52105222..52105237,- | |||
|ontology_enrichment_celltype=CL:0000063!5.37e-07!66 | |||
|ontology_enrichment_celltype_v019_2=CL:0002250,1.26e-12,3;CL:0002563,1.04e-10,9;CL:0002251,1.04e-10,9;CL:0000066,1.09e-08,25;CL:0000034,3.20e-08,97;CL:0000624,4.16e-08,8;CL:0000723,9.34e-08,91;CL:0000048,9.34e-08,91;CL:0000791,3.28e-07,9;CL:0000789,3.28e-07,9;CL:0002420,3.28e-07,9;CL:0002419,3.28e-07,9;CL:0000790,3.28e-07,9;CL:0000355,8.48e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000485,4.16e-12,11;UBERON:0003350,1.04e-10,9;UBERON:0004808,1.04e-10,9;UBERON:0001277,1.04e-10,9;UBERON:0007524,3.13e-08,11;UBERON:0003077,3.13e-08,11;UBERON:0007285,3.13e-08,11;UBERON:0000490,1.74e-07,66;UBERON:0000055,1.86e-07,5;UBERON:0007500,1.86e-07,5;UBERON:0001981,1.86e-07,5;UBERON:0002049,1.86e-07,5;UBERON:0007798,1.86e-07,5;UBERON:0004537,1.86e-07,5;UBERON:0006965,1.86e-07,5;UBERON:0001242,2.50e-07,13;UBERON:0001262,2.50e-07,13;UBERON:0004786,2.50e-07,13;UBERON:0001134,8.48e-07,9;UBERON:0002036,8.48e-07,9;UBERON:0002385,8.48e-07,9;UBERON:0000486,8.48e-07,9;UBERON:0007503,8.48e-07,9;UBERON:0001015,8.48e-07,9;UBERON:0002329,8.48e-07,9;UBERON:0003082,8.48e-07,9;UBERON:0003059,8.48e-07,9;UBERON:0007282,8.48e-07,9;UBERON:0004290,8.48e-07,9;UBERON:0009618,8.48e-07,9 | |||
|phase1_expression=1.28119077683835,1.39590163055744,0,2.41971369045464,0,0.839396359559449,0.700837921786577,4.26106967357202,0.703943610758334,0.468129052643987,0,0,3.42401459862411,3.14713448708391,0,0.202475267389826,0.699561878128147,0,0.137114433605739,0.42438965179803,0.340173160604279,0.397163804803541,0,0,0,1.14846392823004,0.86152399231815,0.430942465371778,0,0,0,0.635030673459631,1.23012957516914,0,6.93243887403059,1.82858109894342,5.51257261908397,1.67412652294763,2.3440060335714,0,4.1176204162171,0,0,1.76255545165808,1.62203089951223,0.917733760808408,0,0.218025156380447,0,0.194429899074283,0,0,0.838913030288682,2.17608642603403,0.672187598284928,0,0.573066879877513,0,0,0,0,1.35537812827653,0,0.449949858640699,0,0,0.299600110518405,0,0,0,0,0,0,0,0.0958454710182364,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0.302286240427142,12.7540375028738,0,0,0,0,0.448026887097336,0.140444420131752,0.170430322578058,0.259786004602869,0,0.422530259330042,0,0,0,0,0.506719730950197,0,0,0,0.148442139064825,0.173485326766136,0,0.230615497256059,0,0.23517741427141,0.125666591329675,0.247194967734374,0.144599356919912,0,0.485300549842228,0,0,0,0,0,0,0.958520996047362,0.599902730993408,0.381210681219194,0,0,0.125654352112864,0.173824320192276,0,0,0.162241263067758,0.305518091550949,0.124406970610093,0,0.420883711772948,0.130120442962704,0,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.0937017245597288,0.258703370739016,0.215567992932842,0.378212160335639,0.175951124163949,0,0,0.348252166522167,0,0.199034266818493,0,0.772043721344145,0.284163499395593,0,0.234526059981096,0.180062061461015,0.23674473558521,0.196764231747404,0,0.465067889500816,0,0.700592054203017,0,0.492502392237286,0.243206428637567,0.292399974850665,0.219550115291051,0.536825675041487,0,0.308713837137853,0,0.264450566663544,0.639864751605702,0.232236671860439,0.128867461322093,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0.948339504765408,0.228497025219458,1.1270773567308,0.203651327845314,0,0.210407459670956,0,0,0.156998727841375,0.246794327843601,0,0,0,0,0,0.482354319504834,0.50925170356284,0,0.324270453550071,0,0,0.372140947668503,0,0,0.179397413521912,0.482443521363367,0,0.189491411770485,0.651859905768103,0,0.704070744865506,0,0,0,0.630540576424764,0,0.159454768657487,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0.252470927204373,0.94652465824877,0.390438744296638,0.430846795465598,0,0,0.566153061577665,1.21443210502468,0.584511715822624,0,0,0,0.178065603667255,0.325773918707152,0.164970122972535,0,0.242780636154981,0.302323556964751,0,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0.258717367565509,0.214337035031592,0.177340233642274,0,0.164549020602121,0.304464949114599,0,0,0.441056796109924,0.16488625294148,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0.185194527369712,0.188368457004691,0,0,0.339956859987711,1.95932033253121,0.138199973804424,0,0.158167996790568,0,0.108005340821801,0.209088296014469,0,0.134864346384821,0,0,0.259229946583586,0,2.25477175473676,0.299033092087958,0,0,0,0.168956125490778,0.117357238645754,0.2604087696879,0.209718688851422,0.241584120826006,1.15212002503146,0,0.202725215290164,0.102710957164827,0,0,0.39736270956253,0.120195449519969,0,0.100966449948148,0,0,0,0.0962118416403295,0,0.680191150845634,0,0.0897138566094757,0,0.772758376128762,0.187682475451182,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0.453142408984205,0,0.207574695168353,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0,0,0,0,0,0,0.0936415074698824,0.128050304809739,0,0,0,0,0,0,0,0.177475806159338,0.238436189947321,0,0,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0.214871054048298,0,0.441182838239031,0 | |||
|short_description=p@chr7:52105222..52105237,- | |||
}} |
Latest revision as of 07:34, 5 August 2015
Short description: | p@chr7:52105222..52105237, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:52105222..52105237, - |
Coexpression cluster: | MCL_coexpression_mm9:366 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal crypt stem cell | 1.26e-12 | 3 |
intestinal epithelial cell | 1.04e-10 | 9 |
epithelial cell of alimentary canal | 1.04e-10 | 9 |
epithelial cell | 1.09e-08 | 25 |
stem cell | 3.20e-08 | 97 |
CD4-positive, alpha-beta T cell | 4.16e-08 | 8 |
somatic stem cell | 9.34e-08 | 91 |
multi fate stem cell | 9.34e-08 | 91 |
mature alpha-beta T cell | 3.28e-07 | 9 |
alpha-beta T cell | 3.28e-07 | 9 |
immature T cell | 3.28e-07 | 9 |
mature T cell | 3.28e-07 | 9 |
immature alpha-beta T cell | 3.28e-07 | 9 |
multi-potent skeletal muscle stem cell | 8.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
simple columnar epithelium | 4.16e-12 | 11 |
epithelium of mucosa | 1.04e-10 | 9 |
gastrointestinal system epithelium | 1.04e-10 | 9 |
intestinal epithelium | 1.04e-10 | 9 |
dense mesenchyme tissue | 3.13e-08 | 11 |
paraxial mesoderm | 3.13e-08 | 11 |
presumptive paraxial mesoderm | 3.13e-08 | 11 |
unilaminar epithelium | 1.74e-07 | 66 |
vessel | 1.86e-07 | 5 |
epithelial tube open at both ends | 1.86e-07 | 5 |
blood vessel | 1.86e-07 | 5 |
vasculature | 1.86e-07 | 5 |
vascular system | 1.86e-07 | 5 |
blood vasculature | 1.86e-07 | 5 |
vascular cord | 1.86e-07 | 5 |
intestinal mucosa | 2.50e-07 | 13 |
wall of intestine | 2.50e-07 | 13 |
gastrointestinal system mucosa | 2.50e-07 | 13 |
skeletal muscle tissue | 8.48e-07 | 9 |
striated muscle tissue | 8.48e-07 | 9 |
muscle tissue | 8.48e-07 | 9 |
multilaminar epithelium | 8.48e-07 | 9 |
epithelial vesicle | 8.48e-07 | 9 |
musculature | 8.48e-07 | 9 |
somite | 8.48e-07 | 9 |
myotome | 8.48e-07 | 9 |
presomitic mesoderm | 8.48e-07 | 9 |
presumptive segmental plate | 8.48e-07 | 9 |
dermomyotome | 8.48e-07 | 9 |
trunk paraxial mesoderm | 8.48e-07 | 9 |