FFCP PHASE1:Mm9::chr7:64846517..64846561,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:64846517..64846561,+
|short_description=p1@Gabrb3
|description=CAGE_peak_1_at_Gabrb3_5end
|association_with_transcript=0bp_to_ENSMUST00000039697,ENSMUST000...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=14402 | |EntrezGene=14402 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P63080 | |UniProt=P63080 | ||
|association_with_transcript=0bp_to_ENSMUST00000039697,ENSMUST00000156375,NM_008071,uc009hee.1_5end | |||
|cluster_id=chr7:64846517..64846561,+ | |||
|description=CAGE_peak_1_at_Gabrb3_5end | |||
|id=chr7:64846517..64846561,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.34e-14!33;CL:0000047!1.34e-14!33;CL:0000031!1.34e-14!33;CL:0000404!1.34e-14!33;CL:0000221!6.33e-14!44;CL:0000133!6.33e-14!44;CL:0002319!9.97e-14!43;CL:0000117!1.24e-12!23;CL:0000337!1.24e-12!23;CL:0000393!1.95e-09!39;CL:0000211!1.95e-09!39;CL:0000055!8.36e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.97e-16,33;CL:0000047,4.97e-16,33;CL:0000031,4.97e-16,33;CL:0000404,4.97e-16,33;CL:0000221,1.70e-15,44;CL:0000133,1.70e-15,44;CL:0002319,2.82e-15,43;CL:0000117,7.59e-14,23;CL:0000337,7.59e-14,23;CL:0000393,3.88e-11,39;CL:0000211,3.88e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.70e-33!73;UBERON:0005743!2.70e-33!73;UBERON:0000073!3.53e-33!75;UBERON:0001016!3.53e-33!75;UBERON:0004121!7.40e-30!102;UBERON:0000924!7.40e-30!102;UBERON:0006601!7.40e-30!102;UBERON:0002346!1.73e-29!71;UBERON:0003075!1.73e-29!71;UBERON:0007284!1.73e-29!71;UBERON:0001049!1.86e-26!52;UBERON:0005068!1.86e-26!52;UBERON:0006241!1.86e-26!52;UBERON:0007135!1.86e-26!52;UBERON:0000955!2.43e-25!50;UBERON:0006238!2.43e-25!50;UBERON:0000033!2.62e-25!63;UBERON:0002616!1.48e-24!49;UBERON:0003056!2.07e-22!49;UBERON:0003080!4.25e-21!40;UBERON:0002780!2.08e-20!39;UBERON:0001890!2.08e-20!39;UBERON:0006240!2.08e-20!39;UBERON:0002020!9.99e-20!34;UBERON:0002791!7.09e-17!29;UBERON:0003528!7.09e-17!29;UBERON:0001893!7.09e-17!29;UBERON:0000956!2.46e-12!21;UBERON:0001869!2.46e-12!21;UBERON:0000203!2.46e-12!21;UBERON:0007811!1.26e-11!86;UBERON:0002619!2.08e-10!17;UBERON:0000153!3.34e-10!94;UBERON:0002021!6.10e-08!10;UBERON:0000411!6.10e-08!10;UBERON:0001950!6.10e-08!10;UBERON:0000468!9.39e-08!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.49e-37,73;UBERON:0001016,6.11e-37,75;UBERON:0004121,2.80e-32,95;UBERON:0000924,2.80e-32,95;UBERON:0006601,2.80e-32,95;UBERON:0002346,5.19e-32,64;UBERON:0003075,5.19e-32,64;UBERON:0007284,5.19e-32,64;UBERON:0000073,8.04e-31,54;UBERON:0001049,1.76e-29,52;UBERON:0005068,1.76e-29,52;UBERON:0006241,1.76e-29,52;UBERON:0007135,1.76e-29,52;UBERON:0010371,1.06e-27,73;UBERON:0000955,3.42e-26,47;UBERON:0006238,3.42e-26,47;UBERON:0002616,2.47e-25,46;UBERON:0003056,1.05e-24,49;UBERON:0003080,3.01e-23,40;UBERON:0010314,1.51e-22,92;UBERON:0002780,1.76e-22,39;UBERON:0001890,1.76e-22,39;UBERON:0006240,1.76e-22,39;UBERON:0002020,1.01e-21,34;UBERON:0003528,1.47e-18,29;UBERON:0002791,1.47e-18,29;UBERON:0001893,1.47e-18,29;UBERON:0000956,1.61e-13,21;UBERON:0001869,1.61e-13,21;UBERON:0000203,1.61e-13,21;UBERON:0002619,2.22e-11,17;UBERON:0002021,1.21e-08,10;UBERON:0000411,1.21e-08,10;UBERON:0001950,1.21e-08,10 | |||
|phase1_expression=15.8547358633746,0,0,0,0,0.33575854382378,0.233612640595526,0,0.140788722151667,0,0,0,0.171200729931206,0,0,0,0,0,0,0,24.0672511127527,0,0,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,14.171635164729,3.73466510648602,8.1660557611199,2.93971485413261,7.18762821824858,0,0,0,0,0,0,36.4169629547276,40.7323054039465,38.0298842103708,0.338844532069132,1.77858959222228,0,0,0.7104801149461,1.79760066311043,2.30530983192933,23.433852381716,18.2258016747782,19.3498964443271,41.1337417541477,34.4554923884517,27.5604298233647,19.9358579717932,25.7381260250806,59.4625757396699,68.9511625660014,59.906547969935,42.4673846491224,42.9991924931325,52.091337055676,37.4105218661851,61.9038871034848,74.2599484195297,82.7906325181006,68.6231501451676,68.22219717206,1.74170244666323,5.44115232768856,0.289864488701678,0,0,0.539703191637817,0,0,4.0728881838208,0,0,0,8.16891834704747,0,0,0,0,0,0,6.16592950482924,0.258937883647172,8.31275978763019,6.41895709034703,5.78484408793068,5.07354093963329,5.27529241934179,6.82014501387088,2.89033160058254,0,0.289198713839823,0,2.75003644910596,1.10420759230197,0.969750506270444,0,68.510706500702,80.6369821231802,0.255457055208591,0.11981512450592,0,0,91.222499397537,113.917650101838,88.5863182395694,135.582969749976,148.826396166252,63.7909296797849,98.3182054190611,2.44414473240759,0.622034853050465,0,2.94618598241064,2.34216797332867,2.98872735763515,6.30217454318722,7.83665052745718,13.8114093277196,16.1423287558911,13.5867500611607,13.4525752784288,0,0.567318240503458,1.58356011747554,1.31517439456545,0.278047249225598,0.696504333044333,0.61734640922383,1.99034266818493,0,0,0,1.03562886267751,1.40715635988658,2.34080679899319,2.3674473558521,1.18058539048442,0.771335564436891,0.232533944750408,0.268273401399619,1.05088808130453,0.658239399653922,0.164167464079095,0.0810688095458557,0.146199987425332,0.439100230582101,0.268412837520744,156.666011680275,84.4846867633925,0.330418782983798,0.264450566663544,2.55945900642281,2.55460339046482,3.99489130098489,3.63030344322017,5.11469500843202,4.56541502670142,0,9.55253937399263,10.0534083520108,9.35095418593409,10.3330966173134,0,0.648414149624083,0.995706366271836,0.379335801906163,2.62771579002376,0,1.4255592949172,0.775809948670503,1.82353131714828,2.97211724484009,4.87113488332687,6.43694784149637,2.96153193412321,0.889357881261447,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0.274561413188081,0,0,0,0.505157755894224,0,0.482443521363367,0,2.27389694124582,1.14075483509418,0.678980343100753,0.234690248288502,0.167506257441816,0,0.195133647857799,0.630540576424764,0.221464689648775,0,0,0,0.289298117163023,0,0,0,0,64.862438355068,64.3492159391195,0,0.252470927204373,7.2566890465739,7.41833614163613,12.7099804662351,5.9742199488138,7.35235624471901,8.20921939287614,6.07216052512342,14.9050487534769,14.2303600060748,138.810808694221,0.425820255624806,2.67098405500883,3.90928702448583,0.494910368917606,1.32745138339963,3.39892890616974,2.41858845571801,2.45186603682668,1.18120757152309,3.07435147943927,3.87642439752332,3.27180356529755,0.356497378384721,1.8962205476149,0,1.03135543248187,60.2578102184205,3.42116078659489,3.49268446213437,10.9311887866112,28.7291178500483,20.6907828418402,25.9987452551351,11.5696680663548,0,0.42366414172764,0.882113592219848,0.16488625294148,2.42196640043858,1.02531972377865,0.358117032009409,0.164140899745061,0.582961673259701,79.1766039584876,0,2.06386867963222,0,0.188368457004691,0.27338845544205,0,0,0,0,0,3.16335993581135,3.65975040828328,1.62008011232702,2.50905955217362,2.83871332870031,1.21377911746339,2.97552440611209,0.785267825952089,0.388844919875379,0,0,1.34564891439581,0.66183396182839,1.75006069509643,2.97067593998782,3.71703476079712,3.40335992072686,0.651021924219751,0.629156066554265,0.483168241652012,0.288030006257865,0,0.810900861160657,0.718976700153791,0.25984164595559,0.358053391334963,0,0,0.147689527174577,0.201932899896295,0.15241361331,0,0,0.0962118416403295,0.233753804363138,0,0.665957860122194,0.179427713218951,0,1.35232715822533,0.187682475451182,0.549454872801795,0.214368379079066,0,110.126609310328,103.112852977608,116.297789228198,129.921005851828,95.9115527678899,97.4458127632714,85.7278575294393,87.3623134254988,92.4410514327777,86.4659720625539,1.86817225651518,11.5717213286299,7.34154504742777,8.265628380322,11.319110781911,8.64064489715066,12.4458167568905,11.1258930909003,17.6505565275498,12.3821633764261,11.660047794951,11.3175804831646,13.2970940607233,15.4300617295735,14.5886091147258,8.09699275181225,15.4126153506658,13.8894638733868,9.47797571847605,9.27353196846703,6.85738504770831,7.98641127717019,7.86839426826159,8.72078499793971,11.5754537910857,11.3383574574847,14.0854539112035,12.8904158604543,11.2717414492065,12.3451299764702,12.4566769030383,14.2831499444567,6.54769669071503,11.1554525653896,11.5743966588685,16.7373087218424,10.0590591631526,11.6030369186081,5.7386499620653,5.29419405886837,3.01428186306548 | |phase1_expression=15.8547358633746,0,0,0,0,0.33575854382378,0.233612640595526,0,0.140788722151667,0,0,0,0.171200729931206,0,0,0,0,0,0,0,24.0672511127527,0,0,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,14.171635164729,3.73466510648602,8.1660557611199,2.93971485413261,7.18762821824858,0,0,0,0,0,0,36.4169629547276,40.7323054039465,38.0298842103708,0.338844532069132,1.77858959222228,0,0,0.7104801149461,1.79760066311043,2.30530983192933,23.433852381716,18.2258016747782,19.3498964443271,41.1337417541477,34.4554923884517,27.5604298233647,19.9358579717932,25.7381260250806,59.4625757396699,68.9511625660014,59.906547969935,42.4673846491224,42.9991924931325,52.091337055676,37.4105218661851,61.9038871034848,74.2599484195297,82.7906325181006,68.6231501451676,68.22219717206,1.74170244666323,5.44115232768856,0.289864488701678,0,0,0.539703191637817,0,0,4.0728881838208,0,0,0,8.16891834704747,0,0,0,0,0,0,6.16592950482924,0.258937883647172,8.31275978763019,6.41895709034703,5.78484408793068,5.07354093963329,5.27529241934179,6.82014501387088,2.89033160058254,0,0.289198713839823,0,2.75003644910596,1.10420759230197,0.969750506270444,0,68.510706500702,80.6369821231802,0.255457055208591,0.11981512450592,0,0,91.222499397537,113.917650101838,88.5863182395694,135.582969749976,148.826396166252,63.7909296797849,98.3182054190611,2.44414473240759,0.622034853050465,0,2.94618598241064,2.34216797332867,2.98872735763515,6.30217454318722,7.83665052745718,13.8114093277196,16.1423287558911,13.5867500611607,13.4525752784288,0,0.567318240503458,1.58356011747554,1.31517439456545,0.278047249225598,0.696504333044333,0.61734640922383,1.99034266818493,0,0,0,1.03562886267751,1.40715635988658,2.34080679899319,2.3674473558521,1.18058539048442,0.771335564436891,0.232533944750408,0.268273401399619,1.05088808130453,0.658239399653922,0.164167464079095,0.0810688095458557,0.146199987425332,0.439100230582101,0.268412837520744,156.666011680275,84.4846867633925,0.330418782983798,0.264450566663544,2.55945900642281,2.55460339046482,3.99489130098489,3.63030344322017,5.11469500843202,4.56541502670142,0,9.55253937399263,10.0534083520108,9.35095418593409,10.3330966173134,0,0.648414149624083,0.995706366271836,0.379335801906163,2.62771579002376,0,1.4255592949172,0.775809948670503,1.82353131714828,2.97211724484009,4.87113488332687,6.43694784149637,2.96153193412321,0.889357881261447,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0.274561413188081,0,0,0,0.505157755894224,0,0.482443521363367,0,2.27389694124582,1.14075483509418,0.678980343100753,0.234690248288502,0.167506257441816,0,0.195133647857799,0.630540576424764,0.221464689648775,0,0,0,0.289298117163023,0,0,0,0,64.862438355068,64.3492159391195,0,0.252470927204373,7.2566890465739,7.41833614163613,12.7099804662351,5.9742199488138,7.35235624471901,8.20921939287614,6.07216052512342,14.9050487534769,14.2303600060748,138.810808694221,0.425820255624806,2.67098405500883,3.90928702448583,0.494910368917606,1.32745138339963,3.39892890616974,2.41858845571801,2.45186603682668,1.18120757152309,3.07435147943927,3.87642439752332,3.27180356529755,0.356497378384721,1.8962205476149,0,1.03135543248187,60.2578102184205,3.42116078659489,3.49268446213437,10.9311887866112,28.7291178500483,20.6907828418402,25.9987452551351,11.5696680663548,0,0.42366414172764,0.882113592219848,0.16488625294148,2.42196640043858,1.02531972377865,0.358117032009409,0.164140899745061,0.582961673259701,79.1766039584876,0,2.06386867963222,0,0.188368457004691,0.27338845544205,0,0,0,0,0,3.16335993581135,3.65975040828328,1.62008011232702,2.50905955217362,2.83871332870031,1.21377911746339,2.97552440611209,0.785267825952089,0.388844919875379,0,0,1.34564891439581,0.66183396182839,1.75006069509643,2.97067593998782,3.71703476079712,3.40335992072686,0.651021924219751,0.629156066554265,0.483168241652012,0.288030006257865,0,0.810900861160657,0.718976700153791,0.25984164595559,0.358053391334963,0,0,0.147689527174577,0.201932899896295,0.15241361331,0,0,0.0962118416403295,0.233753804363138,0,0.665957860122194,0.179427713218951,0,1.35232715822533,0.187682475451182,0.549454872801795,0.214368379079066,0,110.126609310328,103.112852977608,116.297789228198,129.921005851828,95.9115527678899,97.4458127632714,85.7278575294393,87.3623134254988,92.4410514327777,86.4659720625539,1.86817225651518,11.5717213286299,7.34154504742777,8.265628380322,11.319110781911,8.64064489715066,12.4458167568905,11.1258930909003,17.6505565275498,12.3821633764261,11.660047794951,11.3175804831646,13.2970940607233,15.4300617295735,14.5886091147258,8.09699275181225,15.4126153506658,13.8894638733868,9.47797571847605,9.27353196846703,6.85738504770831,7.98641127717019,7.86839426826159,8.72078499793971,11.5754537910857,11.3383574574847,14.0854539112035,12.8904158604543,11.2717414492065,12.3451299764702,12.4566769030383,14.2831499444567,6.54769669071503,11.1554525653896,11.5743966588685,16.7373087218424,10.0590591631526,11.6030369186081,5.7386499620653,5.29419405886837,3.01428186306548 | ||
|short_description=p1@Gabrb3 | |||
}} | }} |
Latest revision as of 23:55, 26 September 2015
Short description: | p1@Gabrb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gabrb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000039697, ENSMUST00000156375, NM_008071, uc009hee.1_5end |
EntrezGene: | Gabrb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.97e-16 | 33 |
neuronal stem cell | 4.97e-16 | 33 |
neuroblast | 4.97e-16 | 33 |
electrically signaling cell | 4.97e-16 | 33 |
ectodermal cell | 1.70e-15 | 44 |
neurectodermal cell | 1.70e-15 | 44 |
neural cell | 2.82e-15 | 43 |
CNS neuron (sensu Vertebrata) | 7.59e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.59e-14 | 23 |
electrically responsive cell | 3.88e-11 | 39 |
electrically active cell | 3.88e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.49e-37 | 73 |
nervous system | 6.11e-37 | 75 |
ectoderm-derived structure | 2.80e-32 | 95 |
ectoderm | 2.80e-32 | 95 |
presumptive ectoderm | 2.80e-32 | 95 |
neurectoderm | 5.19e-32 | 64 |
neural plate | 5.19e-32 | 64 |
presumptive neural plate | 5.19e-32 | 64 |
regional part of nervous system | 8.04e-31 | 54 |
neural tube | 1.76e-29 | 52 |
neural rod | 1.76e-29 | 52 |
future spinal cord | 1.76e-29 | 52 |
neural keel | 1.76e-29 | 52 |
ecto-epithelium | 1.06e-27 | 73 |
brain | 3.42e-26 | 47 |
future brain | 3.42e-26 | 47 |
regional part of brain | 2.47e-25 | 46 |
pre-chordal neural plate | 1.05e-24 | 49 |
anterior neural tube | 3.01e-23 | 40 |
structure with developmental contribution from neural crest | 1.51e-22 | 92 |
regional part of forebrain | 1.76e-22 | 39 |
forebrain | 1.76e-22 | 39 |
future forebrain | 1.76e-22 | 39 |
gray matter | 1.01e-21 | 34 |
brain grey matter | 1.47e-18 | 29 |
regional part of telencephalon | 1.47e-18 | 29 |
telencephalon | 1.47e-18 | 29 |
cerebral cortex | 1.61e-13 | 21 |
cerebral hemisphere | 1.61e-13 | 21 |
pallium | 1.61e-13 | 21 |
regional part of cerebral cortex | 2.22e-11 | 17 |
occipital lobe | 1.21e-08 | 10 |
visual cortex | 1.21e-08 | 10 |
neocortex | 1.21e-08 | 10 |