FFCP PHASE1:Hg19::chr11:27723158..27723188,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:27723158..27723188,- to FFCP PHASE1:Hg19::chr11:27723158..27723188,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=627 | |EntrezGene=627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1033 | |HGNC=1033 | ||
|TSSclassifier=strong | |||
|UniProt=P23560 | |UniProt=P23560 | ||
|association_with_transcript=0bp_to_ENST00000395980,NM_170733,uc001mrv.2_5end | |||
|cluster_id=chr11:27723158..27723188,- | |||
|coexpression_cluster_id=C1629 | |||
|description=CAGE_peak_3_at_BDNF_5end | |||
|id=chr11:27723158..27723188,- | |||
|ontology_enrichment_celltype=CL:0000055!8.77e-28!180;CL:0000057!3.70e-16!75;CL:0000192!4.36e-14!42;CL:0000514!4.36e-14!42;CL:0000359!4.48e-13!32;CL:0000187!3.71e-12!54;CL:0000680!1.11e-11!57;CL:0000056!1.11e-11!57;CL:0000355!1.11e-11!57;CL:0000183!1.33e-10!59;CL:0000393!3.74e-09!60;CL:0000211!3.74e-09!60;CL:0002620!2.38e-08!23;CL:0000222!1.66e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.87e-16;32!CL:0000192;6.90e-11;43!CL:0002620;6.89e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,7.26e-17,32;CL:0000192,3.16e-15,43;CL:0000514,3.16e-15,43;CL:0000057,3.80e-14,76;CL:0000187,2.14e-10,55;CL:0000680,2.42e-09,58;CL:0000056,2.42e-09,58;CL:0000355,2.42e-09,58;CL:0002620,5.75e-09,23;CL:0000393,2.07e-08,61;CL:0000211,2.07e-08,61 | |||
|ontology_enrichment_development_v019=CL:0000514;6.90e-11;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!9.64e-18!365;UBERON:0000481!2.02e-14!347;UBERON:0000914!6.73e-11!83;UBERON:0002329!6.73e-11!83;UBERON:0003077!6.73e-11!83;UBERON:0003059!6.73e-11!83;UBERON:0007282!6.73e-11!83;UBERON:0009618!6.73e-11!83;UBERON:0007285!6.73e-11!83;UBERON:0001637!1.50e-10!42;UBERON:0003509!1.50e-10!42;UBERON:0004572!1.50e-10!42;UBERON:0000483!2.06e-10!309;UBERON:0004290!2.11e-10!70;UBERON:0000119!3.27e-10!312;UBERON:0001134!3.52e-10!61;UBERON:0002036!3.52e-10!61;UBERON:0003082!3.52e-10!61;UBERON:0002385!7.36e-10!63;UBERON:0001015!7.36e-10!63;UBERON:0000383!7.36e-10!63;UBERON:0000477!8.65e-10!286;UBERON:0004573!1.16e-08!33;UBERON:0004571!1.16e-08!33;UBERON:0005256!3.21e-08!143;UBERON:0000486!6.38e-08!82;UBERON:0000025!6.53e-08!194;UBERON:0002100!1.04e-07!216;UBERON:0002619!1.42e-07!22;UBERON:0001950!5.87e-07!20;UBERON:0000033!5.88e-07!123;UBERON:0000956!6.32e-07!25;UBERON:0000203!6.32e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.18e-08;33!UBERON:0004571;2.18e-08;33!UBERON:0001637;1.72e-07;42!UBERON:0003509;1.72e-07;42!UBERON:0004572;1.72e-07;42!UBERON:0002619;2.04e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.12e-11,42;UBERON:0003509,2.12e-11,42;UBERON:0004572,2.12e-11,42;UBERON:0004573,1.87e-09,33;UBERON:0004571,1.87e-09,33;UBERON:0007524,2.27e-08,73;UBERON:0001134,4.02e-08,62;UBERON:0002036,4.02e-08,62;UBERON:0003082,4.02e-08,62;UBERON:0003077,4.94e-08,72;UBERON:0007285,4.94e-08,72;UBERON:0002329,9.79e-08,71;UBERON:0003059,9.79e-08,71;UBERON:0007282,9.79e-08,71;UBERON:0004290,9.79e-08,71;UBERON:0009618,9.79e-08,71;UBERON:0002385,1.40e-07,64;UBERON:0001015,1.40e-07,64;UBERON:0000383,1.40e-07,64;UBERON:0002619,2.14e-07,22;UBERON:0002049,2.95e-07,78;UBERON:0007798,2.95e-07,78;UBERON:0007500,4.53e-07,59;UBERON:0001981,4.53e-07,59;UBERON:0004537,4.53e-07,59;UBERON:0006965,4.53e-07,59;UBERON:0000483,8.89e-07,306;UBERON:0000119,9.20e-07,309 | |||
|phase1_expression=0.908391896352783,1.49870366723688,2.11431606143957,2.00146596706261,0.893922188854576,3.48935409640147,0,0,0,0.491467873003018,0,0,0.527533956456907,0.247532705920093,0.331397375727916,2.6893005858071,1.80808358407193,0,1.46379839637152,0.123121058076788,1.02000345622126,0.940364164434263,0,0.273748850145768,0.627713197974014,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.80719576192283,1.50401373190767,3.0417768981773,0.795285947051099,0.973269740605272,1.22895262313288,4.43458794925128,4.3917392846563,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0.56530794192401,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0,0,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,2.98183171017191,3.54565432660823,3.57504788195691,2.29469296599051,2.4826786753885,3.36406560085384,2.1349799145941,2.4666754841716,0.311211035399766,0.808264032418128,0.653847612453835,0.151357427644931,0,0.70296429550139,0,0,0.149448680551801,0.469737994575059,0.323745888736263,0.421352420106746,0.816616685019573,1.84251475967652,1.65321249881225,5.94001428641027,5.19260551484969,0,0.718618141816238,0,0.125118519871964,0.831192346452549,0.438977620880838,3.0648779579902,10.3664260645552,2.26864366320042,8.07253360599879,1.70845911054854,2.33125091275518,9.30282397861647,3.50378599410692,6.44101350114073,4.46680455195816,5.06328996723799,5.35903528386592,6.56327813034698,2.94559675655358,4.20279747728911,12.0703261455649,6.04512589365842,7.46066606166146,0,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,1.56449532329816,3.21620469096443,2.76269842704961,0.464367928031979,1.44375896333917,1.30137480043828,1.51726221070292,0.482022059766964,0.882351781859152,0.217879444092406,1.66089433377768,0.943819157121151,0.784885860501384,0.769494313892781,0,0,1.6462960453256,0,0,0,0,0,0,2.91665277507493,0,0,0,0.0925884451585296,1.62904152655162,2.07986957055916,2.88662684050547,0.115930404975077,4.69634776943287,0,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,1.7480673759565,0,0.285826432630578,0,1.30788020649984,0,6.98067265092,0,0,2.39344304926383,2.08014873822732,0.257207374262142,1.41849132023278,0,6.71996570193294,3.25572963234866,4.93944202068461,0,2.13235169245527,3.16780749173372,0.602878754119172,3.48613383440118,4.29883862082845,0,0,0,0.718874566474748,0,0,0.868687840005475,0,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.36807447515742,0,0.813795071099207,0.207970861530807,0.892144943985809,0.630809660135739,0.702848489956279,1.20378439891088,0,2.0694614258501,3.32112799267718,2.58116835958384,2.86715927744673,0,0,0,0,0,0,0,0,2.23297027036899,3.52962538562544,2.24528075546459,1.92208723883551,4.09365799253363,3.53878626515936,2.96836132889982,0.616838775210622,0.887808626565635,0.98552587216571,0.519254429183621,0.348631135379878,0,0.200506470303285,0,9.18515585316854,3.27764102412091,3.14698595902618,0,0.0770153371044148,0,0,0.422206515571503,1.13733384070897,0,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0.831076008928724,0.671624264166535,0,0,1.53870075069834,0.328014645699706,1.30151357865721,0.309123034943167,6.22672360764735,5.85817449436175,0,0,0,1.7400729292582,0.154048617114644,0.307007349452259,0.275673144969061,0.214840489736547,0.580066775656914,0.340906509664404,0.534192213880424,0,0.192190067365106,0,0,4.18360994367557,12.277681526395,2.0911118104818,0.924100740528266,1.06461206063404,4.34966496037536,3.15051172476664,2.14687330112987,0,4.42931194606216,4.95638504201945,0.767693373934002,0.42793898803392,0.95460974377781,3.13979456079692,2.87795932133304,8.78518495155375,9.07155498061786,1.41527737101321,3.17020642346017,1.26377536871694,0,4.6305563029944,4.22600587027022,0.682499557039929,5.79762271010222,3.39024349860728,2.75682671773062,5.30751180192976,5.69986150829892,0.578775534266688,0.655894752046633,3.85529716229138,1.54911749049875,2.25356482025793,1.72093622644862,6.484436706866,4.9933947207375,0,7.38876723541824,0,0.75894634753143,4.19921664293979,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,2.02965735142199,0,0.735120647943095,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0.963528450622197,0.201799707191048,0,0,0,0,0,0,0,0,1.6227340708559,0,0,0,0.439524537815682,0.849523652246594,0,0.284136146806413,0,0,0,10.9356241254293,1.40669416410513,1.33570446027487,0.16480387422676,0.211125408127993,0.796991953004279,0,0.251932747854276,0.613612095012929,0,3.42143546427988,0.808815160325942,0.179021174675609,0,1.38100767891707,0,0,0.969332746095218,0.649376687132959,0,0,0,0,0.341380344856499,1.27126825146383,0,0,0,0.173624994933292,0,0,3.05163472634166,2.21158519862449,1.18219047581419,3.29078095730959,0.871507708151921,0.139423744278603,0,4.557682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| ||
|short_description=p3@BDNF | |||
}} | }} |
Latest revision as of 12:35, 17 September 2015
Short description: | p3@BDNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BDNF_5end |
Coexpression cluster: | C1629_hepatic_spindle_Fibroblast_Smooth_liposarcoma_papillary_Ciliary |
Association with transcript: | 0bp_to_ENST00000395980, NM_170733, uc001mrv.2_5end |
EntrezGene: | BDNF |
HGNC: | 1033 |
UniProt: | P23560 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 7.26e-17 | 32 |
smooth muscle cell | 3.16e-15 | 43 |
smooth muscle myoblast | 3.16e-15 | 43 |
fibroblast | 3.80e-14 | 76 |
muscle cell | 2.14e-10 | 55 |
muscle precursor cell | 2.42e-09 | 58 |
myoblast | 2.42e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-09 | 58 |
skin fibroblast | 5.75e-09 | 23 |
electrically responsive cell | 2.07e-08 | 61 |
electrically active cell | 2.07e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
artery | 2.12e-11 | 42 |
arterial blood vessel | 2.12e-11 | 42 |
arterial system | 2.12e-11 | 42 |
systemic artery | 1.87e-09 | 33 |
systemic arterial system | 1.87e-09 | 33 |
dense mesenchyme tissue | 2.27e-08 | 73 |
skeletal muscle tissue | 4.02e-08 | 62 |
striated muscle tissue | 4.02e-08 | 62 |
myotome | 4.02e-08 | 62 |
paraxial mesoderm | 4.94e-08 | 72 |
presumptive paraxial mesoderm | 4.94e-08 | 72 |
somite | 9.79e-08 | 71 |
presomitic mesoderm | 9.79e-08 | 71 |
presumptive segmental plate | 9.79e-08 | 71 |
dermomyotome | 9.79e-08 | 71 |
trunk paraxial mesoderm | 9.79e-08 | 71 |
muscle tissue | 1.40e-07 | 64 |
musculature | 1.40e-07 | 64 |
musculature of body | 1.40e-07 | 64 |
regional part of cerebral cortex | 2.14e-07 | 22 |
vasculature | 2.95e-07 | 78 |
vascular system | 2.95e-07 | 78 |
epithelial tube open at both ends | 4.53e-07 | 59 |
blood vessel | 4.53e-07 | 59 |
blood vasculature | 4.53e-07 | 59 |
vascular cord | 4.53e-07 | 59 |
epithelium | 8.89e-07 | 306 |
cell layer | 9.20e-07 | 309 |