FFCP PHASE1:Hg19::chr15:100106155..100106243,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:100106155..100106243,+ to FFCP PHASE1:Hg19::chr15:100106155..100106243,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4205 | |EntrezGene=4205 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6993 | |HGNC=6993 | ||
|TSSclassifier=strong | |||
|UniProt=B4DFQ7 | |UniProt=B4DFQ7 | ||
|association_with_transcript=0bp_to_ENST00000449277,ENST00000557785,ENST00000558049,ENST00000558983,ENST00000559036_5end | |||
|cluster_id=chr15:100106155..100106243,+ | |||
|description=CAGE_peak_1_at_MEF2A_5end | |||
|id=chr15:100106155..100106243,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.33e-21!42;CL:0000766!1.51e-21!76;CL:0000738!1.39e-20!140;CL:0002009!3.30e-20!65;CL:0000557!1.30e-19!71;CL:0002194!4.19e-19!63;CL:0000576!4.19e-19!63;CL:0000040!4.19e-19!63;CL:0000559!4.19e-19!63;CL:0000860!9.65e-19!45;CL:0000839!8.90e-18!70;CL:0002087!7.91e-16!119;CL:0002031!2.15e-15!124;CL:0000037!1.34e-14!172;CL:0000566!1.34e-14!172;CL:0000763!4.58e-14!112;CL:0000049!4.58e-14!112;CL:0002032!2.52e-13!165;CL:0000837!2.52e-13!165;CL:0000988!2.34e-12!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.14e-17;33!CL:0002057;2.14e-17;33!CL:0000473;3.46e-15;39!CL:0000234;3.46e-15;39!CL:0000576;3.07e-13;48!CL:0000766;1.46e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.67e-23,72;CL:0002009,2.52e-22,61;CL:0000473,2.81e-22,48;CL:0000234,2.81e-22,48;CL:0000738,9.54e-22,136;CL:0000860,1.33e-21,42;CL:0002057,1.33e-21,42;CL:0000557,1.57e-21,67;CL:0002194,3.53e-21,59;CL:0000576,3.53e-21,59;CL:0000040,3.53e-21,59;CL:0000559,3.53e-21,59;CL:0000839,1.43e-19,66;CL:0002087,6.60e-17,115;CL:0002031,2.03e-16,120;CL:0000037,2.24e-15,168;CL:0000763,4.26e-15,108;CL:0000049,4.26e-15,108;CL:0002032,4.49e-14,161;CL:0000837,4.49e-14,161;CL:0000988,2.12e-13,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.03e-15;42!UBERON:0006601;3.46e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.97e-36!115;UBERON:0002390!2.21e-17!102;UBERON:0003061!2.21e-17!102;UBERON:0001474!1.38e-16!86;UBERON:0002193!4.11e-16!112;UBERON:0002371!9.74e-16!80;UBERON:0001049!5.78e-15!57;UBERON:0005068!5.78e-15!57;UBERON:0006241!5.78e-15!57;UBERON:0007135!5.78e-15!57;UBERON:0003080!3.16e-14!42;UBERON:0002780!4.73e-14!41;UBERON:0001890!4.73e-14!41;UBERON:0006240!4.73e-14!41;UBERON:0004765!3.81e-13!101;UBERON:0001434!3.81e-13!101;UBERON:0001893!2.26e-12!34;UBERON:0002405!4.78e-12!115;UBERON:0002020!5.61e-12!34;UBERON:0003528!5.61e-12!34;UBERON:0002616!5.83e-12!59;UBERON:0001869!7.67e-12!32;UBERON:0002791!8.04e-12!33;UBERON:0000955!1.21e-11!69;UBERON:0006238!1.21e-11!69;UBERON:0002619!1.99e-11!22;UBERON:0001950!7.38e-11!20;UBERON:0000073!9.29e-11!94;UBERON:0001016!9.29e-11!94;UBERON:0001017!1.43e-10!82;UBERON:0005743!1.52e-10!86;UBERON:0002346!3.57e-10!90;UBERON:0003075!1.50e-09!86;UBERON:0007284!1.50e-09!86;UBERON:0000956!2.88e-09!25;UBERON:0000203!2.88e-09!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.98e-11;22!UBERON:0001950;7.50e-11;20!UBERON:0001893;1.04e-10;34!UBERON:0001869;1.11e-10;32!UBERON:0002791;2.26e-10;32!UBERON:0003528;2.34e-10;34!UBERON:0002020;2.34e-10;34!UBERON:0002780;2.69e-10;41!UBERON:0001890;2.69e-10;41!UBERON:0007023;1.12e-09;114!UBERON:0000956;2.80e-09;25!UBERON:0000203;2.80e-09;25!UBERON:0000073;3.17e-08;53!UBERON:0002616;3.17e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.59e-35,114;UBERON:0002390,1.10e-18,98;UBERON:0003061,1.10e-18,98;UBERON:0001474,5.03e-18,82;UBERON:0002193,2.94e-17,108;UBERON:0002371,3.38e-17,76;UBERON:0002405,2.94e-16,93;UBERON:0001049,8.97e-15,56;UBERON:0005068,8.97e-15,56;UBERON:0006241,8.97e-15,56;UBERON:0007135,8.97e-15,56;UBERON:0004765,2.11e-14,90;UBERON:0002780,4.73e-14,41;UBERON:0001890,4.73e-14,41;UBERON:0003080,4.73e-14,41;UBERON:0006240,4.73e-14,41;UBERON:0000073,9.15e-14,53;UBERON:0002616,9.15e-14,53;UBERON:0001434,5.07e-13,100;UBERON:0001893,2.26e-12,34;UBERON:0003528,5.61e-12,34;UBERON:0002020,5.61e-12,34;UBERON:0001869,7.67e-12,32;UBERON:0002791,1.75e-11,32;UBERON:0000955,1.88e-11,68;UBERON:0006238,1.88e-11,68;UBERON:0002619,1.99e-11,22;UBERON:0001950,7.38e-11,20;UBERON:0001016,1.40e-10,89;UBERON:0001017,2.19e-10,81;UBERON:0002346,2.05e-09,86;UBERON:0000956,2.88e-09,25;UBERON:0000203,2.88e-09,25;UBERON:0003075,8.42e-09,82;UBERON:0007284,8.42e-09,82;UBERON:0003056,8.35e-07,61 | |||
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| ||
|short_description=p1@MEF2A | |||
}} | }} |
Latest revision as of 21:34, 16 September 2015
Short description: | p1@MEF2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MEF2A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000449277, ENST00000557785, ENST00000558049, ENST00000558983, ENST00000559036_5end |
EntrezGene: | MEF2A |
HGNC: | 6993 |
UniProt: | B4DFQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.67e-23 | 72 |
macrophage dendritic cell progenitor | 2.52e-22 | 61 |
defensive cell | 2.81e-22 | 48 |
phagocyte | 2.81e-22 | 48 |
leukocyte | 9.54e-22 | 136 |
classical monocyte | 1.33e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.33e-21 | 42 |
granulocyte monocyte progenitor cell | 1.57e-21 | 67 |
monopoietic cell | 3.53e-21 | 59 |
monocyte | 3.53e-21 | 59 |
monoblast | 3.53e-21 | 59 |
promonocyte | 3.53e-21 | 59 |
myeloid lineage restricted progenitor cell | 1.43e-19 | 66 |
nongranular leukocyte | 6.60e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 2.03e-16 | 120 |
hematopoietic stem cell | 2.24e-15 | 168 |
myeloid cell | 4.26e-15 | 108 |
common myeloid progenitor | 4.26e-15 | 108 |
hematopoietic oligopotent progenitor cell | 4.49e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.49e-14 | 161 |
hematopoietic cell | 2.12e-13 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.59e-35 | 114 |
hematopoietic system | 1.10e-18 | 98 |
blood island | 1.10e-18 | 98 |
bone element | 5.03e-18 | 82 |
hemolymphoid system | 2.94e-17 | 108 |
bone marrow | 3.38e-17 | 76 |
immune system | 2.94e-16 | 93 |
neural tube | 8.97e-15 | 56 |
neural rod | 8.97e-15 | 56 |
future spinal cord | 8.97e-15 | 56 |
neural keel | 8.97e-15 | 56 |
skeletal element | 2.11e-14 | 90 |
regional part of forebrain | 4.73e-14 | 41 |
forebrain | 4.73e-14 | 41 |
anterior neural tube | 4.73e-14 | 41 |
future forebrain | 4.73e-14 | 41 |
regional part of nervous system | 9.15e-14 | 53 |
regional part of brain | 9.15e-14 | 53 |
skeletal system | 5.07e-13 | 100 |
telencephalon | 2.26e-12 | 34 |
brain grey matter | 5.61e-12 | 34 |
gray matter | 5.61e-12 | 34 |
cerebral hemisphere | 7.67e-12 | 32 |
regional part of telencephalon | 1.75e-11 | 32 |
brain | 1.88e-11 | 68 |
future brain | 1.88e-11 | 68 |
regional part of cerebral cortex | 1.99e-11 | 22 |
neocortex | 7.38e-11 | 20 |
nervous system | 1.40e-10 | 89 |
central nervous system | 2.19e-10 | 81 |
neurectoderm | 2.05e-09 | 86 |
cerebral cortex | 2.88e-09 | 25 |
pallium | 2.88e-09 | 25 |
neural plate | 8.42e-09 | 82 |
presumptive neural plate | 8.42e-09 | 82 |
pre-chordal neural plate | 8.35e-07 | 61 |