FFCP PHASE1:Hg19::chr17:42422629..42422636,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:42422629..42422636,+ to FFCP PHASE1:Hg19::chr17:42422629..42422636,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2896 | |EntrezGene=2896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4601 | |HGNC=4601 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H8S1 | |UniProt=Q9H8S1 | ||
|association_with_transcript=-33bp_to_ENST00000357351,ENST00000393566_5end | |||
|cluster_id=chr17:42422629..42422636,+ | |||
|coexpression_cluster_id=C1750 | |||
|description=CAGE_peak_3_at_GRN_5end | |||
|id=chr17:42422629..42422636,+ | |||
|ontology_enrichment_celltype=CL:0002371!3.61e-19!591;CL:0000144!8.12e-17!625;CL:0000548!3.33e-16!679;CL:0000004!3.33e-16!679;CL:0000255!3.33e-16!679;CL:0002009!4.02e-16!65;CL:0002194!6.91e-16!63;CL:0000576!6.91e-16!63;CL:0000040!6.91e-16!63;CL:0000559!6.91e-16!63;CL:0000012!2.56e-15!682;CL:0000557!1.14e-13!71;CL:0000839!1.09e-12!70;CL:0002057!9.04e-12!42;CL:0000222!1.51e-11!119;CL:0000766!2.01e-10!76;CL:0000063!2.58e-10!578;CL:0000860!3.49e-10!45;CL:0000048!3.15e-09!430;CL:0000723!6.25e-09!436;CL:0000055!1.18e-08!180;CL:0000213!7.27e-08!57;CL:0000215!7.27e-08!57;CL:0000057!9.65e-08!75;CL:0002078!1.04e-07!44;CL:0000034!1.69e-07!444;CL:0002320!3.94e-07!365;CL:0000115!6.82e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000473;6.92e-14;39!CL:0000234;6.92e-14;39!CL:0000860;1.05e-12;33!CL:0002057;1.05e-12;33!CL:0000576;8.01e-09;48!CL:0000134;1.35e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.47e-17,61;CL:0002194,2.41e-17,59;CL:0000576,2.41e-17,59;CL:0000040,2.41e-17,59;CL:0000559,2.41e-17,59;CL:0000473,2.75e-15,48;CL:0000234,2.75e-15,48;CL:0000557,7.90e-15,67;CL:0000839,8.66e-14,66;CL:0000222,5.85e-12,121;CL:0000860,9.00e-12,42;CL:0002057,9.00e-12,42;CL:0000766,2.39e-11,72;CL:0000048,1.25e-09,427;CL:0000723,2.53e-09,433;CL:0000213,4.56e-08,58;CL:0000215,4.56e-08,58;CL:0000057,5.76e-08,76;CL:0002078,6.46e-08,45;CL:0000034,7.48e-08,441;CL:0002320,2.34e-07,361;CL:0000115,4.22e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002057;4.40e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.02e-21!448;UBERON:0004120!7.02e-21!448;UBERON:0006603!7.02e-21!448;UBERON:0003081!9.70e-21!216;UBERON:0002204!3.35e-16!167;UBERON:0000468!6.14e-14!659;UBERON:0002371!6.65e-14!80;UBERON:0001474!1.29e-12!86;UBERON:0004765!3.46e-12!101;UBERON:0001434!3.46e-12!101;UBERON:0000467!1.18e-11!625;UBERON:0002405!1.24e-11!115;UBERON:0000480!1.90e-11!626;UBERON:0002193!2.09e-08!112;UBERON:0004872!7.42e-08!84;UBERON:0002050!1.21e-07!605;UBERON:0005423!1.21e-07!605;UBERON:0000923!1.23e-07!604;UBERON:0005291!1.23e-07!604;UBERON:0006598!1.23e-07!604;UBERON:0002532!1.23e-07!604;UBERON:0003914!1.87e-07!118;UBERON:0002384!3.49e-07!375;UBERON:0000062!3.84e-07!511;UBERON:0002049!5.40e-07!79;UBERON:0007798!5.40e-07!79;UBERON:0000055!5.77e-07!69;UBERON:0002390!7.94e-07!102;UBERON:0003061!7.94e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.65e-24,315;UBERON:0004120,2.65e-24,315;UBERON:0006603,2.65e-24,315;UBERON:0003081,2.29e-20,203;UBERON:0002204,4.25e-18,167;UBERON:0002371,5.75e-15,76;UBERON:0004765,2.55e-14,90;UBERON:0002405,4.50e-14,93;UBERON:0001434,5.62e-14,100;UBERON:0001474,1.58e-13,82;UBERON:0002193,6.28e-09,108;UBERON:0004872,1.18e-07,83;UBERON:0002384,2.08e-07,371;UBERON:0005423,2.40e-07,581;UBERON:0002390,2.69e-07,98;UBERON:0003061,2.69e-07,98;UBERON:0003914,2.69e-07,117;UBERON:0000923,3.25e-07,560;UBERON:0010316,3.25e-07,560;UBERON:0005291,3.25e-07,560;UBERON:0006598,3.25e-07,560;UBERON:0010317,3.25e-07,560;UBERON:0002532,3.25e-07,560;UBERON:0002050,5.18e-07,564;UBERON:0000922,8.38e-07,592;UBERON:0002049,8.50e-07,78;UBERON:0007798,8.50e-07,78;UBERON:0000055,9.22e-07,68 | |||
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| ||
|short_description=p3@GRN | |||
}} | }} |
Latest revision as of 20:58, 24 September 2015
Short description: | p3@GRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GRN_5end |
Coexpression cluster: | C1750_Monocytederived_Fibroblast_Mesenchymal_Smooth_Macrophage_CD14_Pericytes |
Association with transcript: | -33bp_to_ENST00000357351, ENST00000393566_5end |
EntrezGene: | GRN |
HGNC: | 4601 |
UniProt: | Q9H8S1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.47e-17 | 61 |
monopoietic cell | 2.41e-17 | 59 |
monocyte | 2.41e-17 | 59 |
monoblast | 2.41e-17 | 59 |
promonocyte | 2.41e-17 | 59 |
defensive cell | 2.75e-15 | 48 |
phagocyte | 2.75e-15 | 48 |
granulocyte monocyte progenitor cell | 7.90e-15 | 67 |
myeloid lineage restricted progenitor cell | 8.66e-14 | 66 |
mesodermal cell | 5.85e-12 | 121 |
classical monocyte | 9.00e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.00e-12 | 42 |
myeloid leukocyte | 2.39e-11 | 72 |
multi fate stem cell | 1.25e-09 | 427 |
somatic stem cell | 2.53e-09 | 433 |
lining cell | 4.56e-08 | 58 |
barrier cell | 4.56e-08 | 58 |
fibroblast | 5.76e-08 | 76 |
meso-epithelial cell | 6.46e-08 | 45 |
stem cell | 7.48e-08 | 441 |
connective tissue cell | 2.34e-07 | 361 |
endothelial cell | 4.22e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.65e-24 | 315 |
mesoderm-derived structure | 2.65e-24 | 315 |
presumptive mesoderm | 2.65e-24 | 315 |
lateral plate mesoderm | 2.29e-20 | 203 |
musculoskeletal system | 4.25e-18 | 167 |
bone marrow | 5.75e-15 | 76 |
skeletal element | 2.55e-14 | 90 |
immune system | 4.50e-14 | 93 |
skeletal system | 5.62e-14 | 100 |
bone element | 1.58e-13 | 82 |
hemolymphoid system | 6.28e-09 | 108 |
splanchnic layer of lateral plate mesoderm | 1.18e-07 | 83 |
connective tissue | 2.08e-07 | 371 |
developing anatomical structure | 2.40e-07 | 581 |
hematopoietic system | 2.69e-07 | 98 |
blood island | 2.69e-07 | 98 |
epithelial tube | 2.69e-07 | 117 |
germ layer | 3.25e-07 | 560 |
germ layer / neural crest | 3.25e-07 | 560 |
embryonic tissue | 3.25e-07 | 560 |
presumptive structure | 3.25e-07 | 560 |
germ layer / neural crest derived structure | 3.25e-07 | 560 |
epiblast (generic) | 3.25e-07 | 560 |
embryonic structure | 5.18e-07 | 564 |
embryo | 8.38e-07 | 592 |
vasculature | 8.50e-07 | 78 |
vascular system | 8.50e-07 | 78 |
vessel | 9.22e-07 | 68 |