FFCP PHASE1:Hg19::chr1:235813008..235813019,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:235813008..235813019,- to FFCP PHASE1:Hg19::chr1:235813008..235813019,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2786 | |EntrezGene=2786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4407 | |HGNC=4407 | ||
|TSSclassifier=strong | |||
|UniProt=P50150,B1APZ0 | |UniProt=P50150,B1APZ0 | ||
|association_with_transcript=273bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | |||
|cluster_id=chr1:235813008..235813019,- | |||
|coexpression_cluster_id=C1472 | |||
|description=CAGE_peak_8_at_GNG4_5end | |||
|id=chr1:235813008..235813019,- | |||
|ontology_enrichment_celltype=CL:0000047!3.20e-07!8;CL:0002319!3.62e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000123;6.00e-15;2!CL:0000242;6.00e-15;2!CL:0002553;1.65e-08;1!CL:0000167;6.85e-08;1!CL:0000164;6.85e-08;1!CL:0000502;6.85e-08;1!CL:0000172;6.85e-08;1!CL:0000173;6.85e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,6.91e-15,2;CL:0002553,1.65e-08,1;CL:0000167,6.19e-08,1;CL:0000164,6.19e-08,1;CL:0000502,6.19e-08,1;CL:0000172,6.19e-08,1;CL:0000173,6.19e-08,1;CL:0002351,6.19e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;6.85e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;1.19e-10;6!DOID:3151;6.85e-08;1!DOID:3149;6.85e-08;1!DOID:4430;6.85e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.18e-10,6;DOID:4430,6.19e-08,1;DOID:3151,1.21e-07,1;DOID:3149,1.21e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.62e-41!82;UBERON:0000073!2.27e-40!94;UBERON:0001016!2.27e-40!94;UBERON:0005743!3.53e-40!86;UBERON:0001049!2.82e-33!57;UBERON:0005068!2.82e-33!57;UBERON:0006241!2.82e-33!57;UBERON:0007135!2.82e-33!57;UBERON:0000955!2.24e-31!69;UBERON:0006238!2.24e-31!69;UBERON:0002616!8.92e-28!59;UBERON:0002780!5.00e-26!41;UBERON:0001890!5.00e-26!41;UBERON:0006240!5.00e-26!41;UBERON:0003075!1.44e-25!86;UBERON:0007284!1.44e-25!86;UBERON:0003080!3.36e-25!42;UBERON:0002020!2.36e-24!34;UBERON:0003528!2.36e-24!34;UBERON:0001893!3.32e-24!34;UBERON:0002346!7.99e-24!90;UBERON:0004121!1.52e-23!169;UBERON:0002791!6.94e-23!33;UBERON:0000924!1.44e-22!173;UBERON:0006601!1.44e-22!173;UBERON:0001869!7.76e-22!32;UBERON:0007023!2.45e-21!115;UBERON:0000153!1.47e-20!129;UBERON:0007811!1.47e-20!129;UBERON:0003056!7.35e-20!61;UBERON:0000033!2.43e-19!123;UBERON:0002619!1.06e-17!22;UBERON:0001950!1.40e-17!20;UBERON:0000956!8.46e-17!25;UBERON:0000203!8.46e-17!25;UBERON:0000064!9.03e-11!219;UBERON:0002308!3.79e-09!9;UBERON:0000125!3.79e-09!9;UBERON:0003076!3.98e-09!15;UBERON:0003057!3.98e-09!15;UBERON:0002021!7.13e-09!5;UBERON:0000369!5.27e-08!4;UBERON:0002435!5.27e-08!4;UBERON:0000204!5.27e-08!4;UBERON:0010082!5.27e-08!4;UBERON:0000025!1.37e-07!194;UBERON:0004733!2.12e-07!12;UBERON:0002028!2.12e-07!12;UBERON:0007277!2.12e-07!12;UBERON:0002298!9.46e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;7.35e-16;34!UBERON:0002020;7.35e-16;34!UBERON:0000369;1.34e-15;4!UBERON:0002435;1.34e-15;4!UBERON:0000204;1.34e-15;4!UBERON:0002791;1.71e-14;32!UBERON:0001869;9.17e-14;32!UBERON:0001016;4.47e-12;83!UBERON:0000125;5.20e-12;9!UBERON:0002308;5.20e-12;9!UBERON:0001893;6.33e-12;34!UBERON:0001950;7.13e-11;20!UBERON:0002619;6.97e-10;22!UBERON:0005383;1.07e-09;3!UBERON:0005382;1.07e-09;3!UBERON:0009663;3.89e-09;7!UBERON:0002780;7.58e-09;41!UBERON:0001890;7.58e-09;41!UBERON:0000956;1.11e-08;25!UBERON:0000203;1.11e-08;25!UBERON:0000955;2.45e-08;68!UBERON:0001882;3.00e-08;1!UBERON:0005403;3.00e-08;1!UBERON:0002022;6.85e-08;1!UBERON:0001874;6.85e-08;1!UBERON:0000073;3.24e-07;53!UBERON:0002616;3.24e-07;53!UBERON:0002420;3.31e-07;9!UBERON:0007245;3.31e-07;9!UBERON:0010009;3.31e-07;9!UBERON:0010011;3.31e-07;9!UBERON:0000454;3.31e-07;9!UBERON:0001017;7.72e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.16e-20,89;UBERON:0001017,2.84e-17,81;UBERON:0003528,3.52e-17,34;UBERON:0002020,3.52e-17,34;UBERON:0000369,1.07e-15,4;UBERON:0002435,1.07e-15,4;UBERON:0000204,1.07e-15,4;UBERON:0010082,1.07e-15,4;UBERON:0002791,6.92e-15,32;UBERON:0001869,6.92e-15,32;UBERON:0001049,1.96e-14,56;UBERON:0005068,1.96e-14,56;UBERON:0006241,1.96e-14,56;UBERON:0007135,1.96e-14,56;UBERON:0001893,5.90e-14,34;UBERON:0000955,1.82e-13,68;UBERON:0006238,1.82e-13,68;UBERON:0000073,8.46e-13,53;UBERON:0002616,8.46e-13,53;UBERON:0000125,5.52e-12,9;UBERON:0002308,5.52e-12,9;UBERON:0002780,2.14e-11,41;UBERON:0001890,2.14e-11,41;UBERON:0003080,2.14e-11,41;UBERON:0006240,2.14e-11,41;UBERON:0004121,2.15e-11,171;UBERON:0000924,2.15e-11,171;UBERON:0006601,2.15e-11,171;UBERON:0010371,3.07e-11,104;UBERON:0003075,6.32e-11,82;UBERON:0007284,6.32e-11,82;UBERON:0001950,7.02e-11,20;UBERON:0002346,2.60e-10,86;UBERON:0002619,6.87e-10,22;UBERON:0005383,9.81e-10,3;UBERON:0005382,9.81e-10,3;UBERON:0009663,3.44e-09,7;UBERON:0003056,5.58e-09,61;UBERON:0000956,1.09e-08,25;UBERON:0000203,1.09e-08,25;UBERON:0001882,2.52e-08,1;UBERON:0005403,2.52e-08,1;UBERON:0002022,5.40e-08,1;UBERON:0011216,7.98e-08,223;UBERON:0001874,9.94e-08,1;UBERON:0002420,3.01e-07,9;UBERON:0007245,3.01e-07,9;UBERON:0010009,3.01e-07,9;UBERON:0010011,3.01e-07,9;UBERON:0000454,3.01e-07,9 | |||
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| ||
|short_description=p8@GNG4 | |||
}} | }} |
Latest revision as of 12:45, 16 September 2015
Short description: | p8@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_GNG4_5end |
Coexpression cluster: | C1472_nonsmall_neuroblastoma_small_tubular_carcinoid_smallcell_merkel |
Association with transcript: | 273bp_to_ENST00000391854, NM_001098722, uc001hxe.3_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | P50150B1APZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 6.91e-15 | 2 |
lung fibroblast | 1.65e-08 | 1 |
peptide hormone secreting cell | 6.19e-08 | 1 |
enteroendocrine cell | 6.19e-08 | 1 |
type D enteroendocrine cell | 6.19e-08 | 1 |
somatostatin secreting cell | 6.19e-08 | 1 |
pancreatic D cell | 6.19e-08 | 1 |
progenitor cell of endocrine pancreas | 6.19e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.18e-10 | 6 |
somatostatinoma | 6.19e-08 | 1 |
skin squamous cell carcinoma | 1.21e-07 | 1 |
keratoacanthoma | 1.21e-07 | 1 |