FFCP PHASE1:Hg19::chr2:216248820..216248848,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216248820..216248848,- to FFCP PHASE1:Hg19::chr2:216248820..216248848,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_ENST00000480737_5end | |||
|cluster_id=chr2:216248820..216248848,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_15_at_FN1_5end | |||
|id=chr2:216248820..216248848,- | |||
|ontology_enrichment_celltype=CL:0000055!5.36e-34!180;CL:0000057!3.95e-24!75;CL:0002371!2.04e-15!591;CL:0000680!6.75e-14!57;CL:0000056!6.75e-14!57;CL:0000355!6.75e-14!57;CL:0000183!2.40e-13!59;CL:0000144!2.80e-13!625;CL:0000187!1.23e-12!54;CL:0000220!3.03e-12!246;CL:0002321!6.98e-12!248;CL:0000222!3.13e-11!119;CL:0000393!3.38e-10!60;CL:0000211!3.38e-10!60;CL:0002620!5.71e-10!23;CL:0000192!1.08e-08!42;CL:0000514!1.08e-08!42;CL:0002334!3.80e-08!12;CL:0000548!1.12e-07!679;CL:0000004!1.12e-07!679;CL:0000255!1.12e-07!679;CL:0002494!2.97e-07!16;CL:0000012!3.80e-07!682;CL:0000048!4.81e-07!430;CL:0000359!5.98e-07!32;CL:0000723!8.73e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.55e-13;55!CL:0000723;1.59e-11;61!CL:0000057;6.60e-11;73!CL:0000048;1.08e-10;58!CL:0002620;1.13e-10;23!CL:0002320;1.50e-09;188!CL:0000349;1.68e-09;19!CL:0002334;4.51e-09;12!CL:0000187;1.40e-08;55!CL:0000034;1.41e-08;69!CL:0000499;3.75e-08;28!CL:0002494;4.23e-08;16!CL:0000359;1.81e-07;32!CL:0000192;2.25e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.08e-27,76;CL:0000048,3.71e-17,427;CL:0000723,6.33e-17,433;CL:0000680,3.59e-16,58;CL:0000056,3.59e-16,58;CL:0000355,3.59e-16,58;CL:0000034,6.91e-16,441;CL:0000187,1.00e-14,55;CL:0000393,1.72e-11,61;CL:0000211,1.72e-11,61;CL:0002620,1.25e-10,23;CL:0000192,3.41e-10,43;CL:0000514,3.41e-10,43;CL:0000222,4.52e-10,121;CL:0000349,2.06e-09,19;CL:0002321,2.26e-09,250;CL:0002334,4.51e-09,12;CL:0000499,3.10e-08,28;CL:0002494,4.68e-08,16;CL:0002320,6.29e-08,361;CL:0000359,7.60e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000355;4.95e-09;58!CL:0000514;2.25e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;6.21e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.37e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005256!4.73e-18!143;UBERON:0000914!1.37e-16!83;UBERON:0002329!1.37e-16!83;UBERON:0003077!1.37e-16!83;UBERON:0003059!1.37e-16!83;UBERON:0007282!1.37e-16!83;UBERON:0009618!1.37e-16!83;UBERON:0007285!1.37e-16!83;UBERON:0004290!7.70e-15!70;UBERON:0000486!1.02e-14!82;UBERON:0003914!5.82e-14!118;UBERON:0004872!2.68e-13!84;UBERON:0000490!3.59e-13!138;UBERON:0001134!2.18e-12!61;UBERON:0002036!2.18e-12!61;UBERON:0003082!2.18e-12!61;UBERON:0002385!3.18e-12!63;UBERON:0001015!3.18e-12!63;UBERON:0000383!3.18e-12!63;UBERON:0002100!6.83e-12!216;UBERON:0002049!2.06e-11!79;UBERON:0007798!2.06e-11!79;UBERON:0000468!3.25e-11!659;UBERON:0003102!8.48e-11!95;UBERON:0000475!1.03e-10!365;UBERON:0002199!1.67e-10!45;UBERON:0002416!1.67e-10!45;UBERON:0000119!6.13e-10!312;UBERON:0000483!1.48e-09!309;UBERON:0001009!1.71e-09!113;UBERON:0004535!1.82e-09!110;UBERON:0001637!6.59e-09!42;UBERON:0003509!6.59e-09!42;UBERON:0004572!6.59e-09!42;UBERON:0002097!7.21e-09!40;UBERON:0000055!7.32e-09!69;UBERON:0001981!1.30e-08!60;UBERON:0007500!1.30e-08!60;UBERON:0004537!1.30e-08!60;UBERON:0006965!1.30e-08!60;UBERON:0004923!1.56e-08!57;UBERON:0003104!1.14e-07!238;UBERON:0009142!1.14e-07!238;UBERON:0000467!4.29e-07!625;UBERON:0000948!4.99e-07!24;UBERON:0005498!4.99e-07!24;UBERON:0004140!4.99e-07!24;UBERON:0009881!4.99e-07!24;UBERON:0004141!4.99e-07!24;UBERON:0003084!4.99e-07!24;UBERON:0007005!4.99e-07!24;UBERON:0004139!4.99e-07!24;UBERON:0004291!4.99e-07!24;UBERON:0000481!6.10e-07!347;UBERON:0000480!6.25e-07!626;UBERON:0004573!6.40e-07!33;UBERON:0004571!6.40e-07!33;UBERON:0001013!7.92e-07!14;UBERON:0007100!9.20e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.28e-09;198!UBERON:0002199;5.66e-08;46!UBERON:0002416;5.66e-08;46!UBERON:0002097;8.84e-08;41!UBERON:0000478;1.29e-07;24!UBERON:0001637;2.99e-07;42!UBERON:0003509;2.99e-07;42!UBERON:0004572;2.99e-07;42!UBERON:0001013;5.07e-07;14!UBERON:0004573;7.25e-07;33!UBERON:0004571;7.25e-07;33 | |||
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| ||
|short_description=p15@FN1 | |||
}} | }} |
Latest revision as of 02:35, 20 September 2015
Short description: | p15@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | -17bp_to_ENST00000480737_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.08e-27 | 76 |
multi fate stem cell | 3.71e-17 | 427 |
somatic stem cell | 6.33e-17 | 433 |
muscle precursor cell | 3.59e-16 | 58 |
myoblast | 3.59e-16 | 58 |
multi-potent skeletal muscle stem cell | 3.59e-16 | 58 |
stem cell | 6.91e-16 | 441 |
muscle cell | 1.00e-14 | 55 |
electrically responsive cell | 1.72e-11 | 61 |
electrically active cell | 1.72e-11 | 61 |
skin fibroblast | 1.25e-10 | 23 |
smooth muscle cell | 3.41e-10 | 43 |
smooth muscle myoblast | 3.41e-10 | 43 |
mesodermal cell | 4.52e-10 | 121 |
extraembryonic cell | 2.06e-09 | 19 |
embryonic cell | 2.26e-09 | 250 |
preadipocyte | 4.51e-09 | 12 |
stromal cell | 3.10e-08 | 28 |
cardiocyte | 4.68e-08 | 16 |
connective tissue cell | 6.29e-08 | 361 |
vascular associated smooth muscle cell | 7.60e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.37e-07 | 14 |