FFCP PHASE1:Hg19::chr3:128369643..128369678,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:128369643..128369678,- to FFCP PHASE1:Hg19::chr3:128369643..128369678,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6184 | |EntrezGene=6184 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10381 | |HGNC=10381 | ||
|TSSclassifier=strong | |||
|UniProt=F8WF32,B4DNJ5,F5H6I5 | |UniProt=F8WF32,B4DNJ5,F5H6I5 | ||
|association_with_transcript=0bp_to_ENST00000476931,ENST00000481168,ENST00000497415,ENST00000537139,ENST00000545956_5end | |||
|cluster_id=chr3:128369643..128369678,- | |||
|coexpression_cluster_id=C2341 | |||
|description=CAGE_peak_1_at_RPN1_5end | |||
|id=chr3:128369643..128369678,- | |||
|ontology_enrichment_celltype=CL:0000548!6.39e-34!679;CL:0000004!6.39e-34!679;CL:0000255!6.39e-34!679;CL:0000012!1.66e-33!682;CL:0000144!1.40e-28!625;CL:0002371!1.06e-23!591;CL:0000220!1.04e-17!246;CL:0000003!2.18e-17!722;CL:0002321!4.42e-17!248;CL:0000055!7.27e-17!180;CL:0000063!1.70e-16!578;CL:0000222!2.08e-16!119;CL:0000066!1.50e-11!254;CL:0000183!5.84e-11!59;CL:0000192!1.24e-10!42;CL:0000514!1.24e-10!42;CL:0000057!4.82e-10!75;CL:0000680!8.18e-10!57;CL:0000056!8.18e-10!57;CL:0000355!8.18e-10!57;CL:0000359!9.51e-10!32;CL:0000187!2.13e-09!54;CL:0000048!5.82e-08!430;CL:0000723!7.06e-08!436;CL:0000034!6.73e-07!444;CL:0000213!8.91e-07!57;CL:0000215!8.91e-07!57;CL:0000393!9.38e-07!60;CL:0000211!9.38e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.22e-09;32!CL:0000192;1.50e-07;43!CL:0000134;1.68e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.15e-17,250;CL:0000222,2.47e-16,121;CL:0000066,9.40e-12,253;CL:0000057,2.24e-10,76;CL:0000192,4.37e-10,43;CL:0000514,4.37e-10,43;CL:0000359,9.51e-10,32;CL:0000680,2.16e-09,58;CL:0000056,2.16e-09,58;CL:0000355,2.16e-09,58;CL:0000187,5.62e-09,55;CL:0000048,1.15e-07,427;CL:0000723,1.39e-07,433;CL:0000213,4.83e-07,58;CL:0000215,4.83e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;1.50e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!6.56e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;6.59e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.56e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.94e-18!118;UBERON:0005256!1.58e-15!143;UBERON:0000926!1.90e-15!448;UBERON:0004120!1.90e-15!448;UBERON:0006603!1.90e-15!448;UBERON:0002100!1.95e-14!216;UBERON:0000490!1.10e-12!138;UBERON:0000055!1.17e-11!69;UBERON:0002049!1.20e-11!79;UBERON:0007798!1.20e-11!79;UBERON:0001637!3.07e-11!42;UBERON:0003509!3.07e-11!42;UBERON:0004572!3.07e-11!42;UBERON:0003104!4.06e-11!238;UBERON:0009142!4.06e-11!238;UBERON:0009569!5.02e-11!113;UBERON:0004872!5.64e-11!84;UBERON:0001981!8.99e-11!60;UBERON:0007500!8.99e-11!60;UBERON:0004537!8.99e-11!60;UBERON:0006965!8.99e-11!60;UBERON:0000466!4.93e-10!126;UBERON:0000486!1.59e-09!82;UBERON:0004573!2.44e-09!33;UBERON:0004571!2.44e-09!33;UBERON:0004290!3.20e-09!70;UBERON:0000914!3.40e-09!83;UBERON:0002329!3.40e-09!83;UBERON:0003077!3.40e-09!83;UBERON:0003059!3.40e-09!83;UBERON:0007282!3.40e-09!83;UBERON:0009618!3.40e-09!83;UBERON:0007285!3.40e-09!83;UBERON:0004535!1.91e-08!110;UBERON:0001009!2.10e-08!113;UBERON:0002417!5.81e-08!61;UBERON:0000916!5.81e-08!61;UBERON:0001134!7.33e-08!61;UBERON:0002036!7.33e-08!61;UBERON:0003082!7.33e-08!61;UBERON:0002385!4.61e-07!63;UBERON:0001015!4.61e-07!63;UBERON:0000383!4.61e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;8.06e-09;42!UBERON:0003509;8.06e-09;42!UBERON:0004572;8.06e-09;42!UBERON:0004573;1.28e-08;33!UBERON:0004571;1.28e-08;33!UBERON:0003914;8.31e-07;74!UBERON:0007500;8.63e-07;56!UBERON:0001981;8.63e-07;56!UBERON:0004537;8.63e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,7.23e-19,117;UBERON:0002100,2.54e-15,199;UBERON:0000490,7.73e-14,148;UBERON:0005256,8.41e-14,122;UBERON:0003104,2.97e-13,160;UBERON:0009142,2.97e-13,160;UBERON:0000055,2.65e-11,68;UBERON:0002049,2.65e-11,78;UBERON:0007798,2.65e-11,78;UBERON:0001637,3.07e-11,42;UBERON:0003509,3.07e-11,42;UBERON:0004572,3.07e-11,42;UBERON:0009569,3.72e-11,112;UBERON:0007503,1.11e-10,78;UBERON:0004872,1.21e-10,83;UBERON:0007500,2.05e-10,59;UBERON:0001981,2.05e-10,59;UBERON:0004537,2.05e-10,59;UBERON:0006965,2.05e-10,59;UBERON:0004573,2.44e-09,33;UBERON:0004571,2.44e-09,33;UBERON:0000486,3.39e-09,83;UBERON:0000926,4.87e-09,315;UBERON:0004120,4.87e-09,315;UBERON:0006603,4.87e-09,315;UBERON:0002329,7.21e-09,71;UBERON:0003059,7.21e-09,71;UBERON:0007282,7.21e-09,71;UBERON:0004290,7.21e-09,71;UBERON:0009618,7.21e-09,71;UBERON:0007524,2.06e-08,73;UBERON:0002417,2.54e-08,60;UBERON:0000916,2.54e-08,60;UBERON:0003077,2.67e-08,72;UBERON:0007285,2.67e-08,72;UBERON:0004535,3.60e-08,109;UBERON:0001009,3.94e-08,112;UBERON:0001134,1.60e-07,62;UBERON:0002036,1.60e-07,62;UBERON:0003082,1.60e-07,62;UBERON:0002385,9.35e-07,64;UBERON:0001015,9.35e-07,64;UBERON:0000383,9.35e-07,64;UBERON:0005172,9.58e-07,54;UBERON:0005173,9.58e-07,54 | |||
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| ||
|short_description=p1@RPN1 | |||
}} | }} |
Latest revision as of 07:16, 20 September 2015
Short description: | p1@RPN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPN1_5end |
Coexpression cluster: | C2341_Smooth_Fibroblast_mesenchymal_Hepatic_Adipocyte_Pericytes_Preadipocyte |
Association with transcript: | 0bp_to_ENST00000476931, ENST00000481168, ENST00000497415, ENST00000537139, ENST00000545956_5end |
EntrezGene: | RPN1 |
HGNC: | 10381 |
UniProt: | F8WF32B4DNJ5F5H6I5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.15e-17 | 250 |
mesodermal cell | 2.47e-16 | 121 |
epithelial cell | 9.40e-12 | 253 |
fibroblast | 2.24e-10 | 76 |
smooth muscle cell | 4.37e-10 | 43 |
smooth muscle myoblast | 4.37e-10 | 43 |
vascular associated smooth muscle cell | 9.51e-10 | 32 |
muscle precursor cell | 2.16e-09 | 58 |
myoblast | 2.16e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.16e-09 | 58 |
muscle cell | 5.62e-09 | 55 |
multi fate stem cell | 1.15e-07 | 427 |
somatic stem cell | 1.39e-07 | 433 |
lining cell | 4.83e-07 | 58 |
barrier cell | 4.83e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.56e-07 | 14 |