FFCP PHASE1:Mm9::chr11:69484746..69484786,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr11:69484746..69484786,- to FFCP PHASE1:Mm9::chr11:69484746..69484786,-: NSchange) |
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(6 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=13681 | |EntrezGene=13681 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENSMUST00000145289_5end | |||
|cluster_id=chr11:69484746..69484786,- | |||
|description=CAGE_peak_3_at_Eif4a1_5end | |||
|id=chr11:69484746..69484786,- | |||
|ontology_enrichment_celltype=CL:0000117!1.17e-10!23;CL:0000337!1.17e-10!23;CL:0000540!1.79e-09!33;CL:0000047!1.79e-09!33;CL:0000031!1.79e-09!33;CL:0000404!1.79e-09!33;CL:0000393!9.32e-09!39;CL:0000211!9.32e-09!39;CL:0000034!4.46e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.99e-14,23;CL:0000337,3.99e-14,23;CL:0000540,2.86e-10,33;CL:0000047,2.86e-10,33;CL:0000031,2.86e-10,33;CL:0000404,2.86e-10,33;CL:0000393,5.17e-10,39;CL:0000211,5.17e-10,39;CL:0000034,2.52e-09,97;CL:0000723,7.01e-07,91;CL:0000048,7.01e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.17e-15!73;UBERON:0005743!4.17e-15!73;UBERON:0000073!4.77e-15!75;UBERON:0001016!4.77e-15!75;UBERON:0001049!1.34e-14!52;UBERON:0005068!1.34e-14!52;UBERON:0006241!1.34e-14!52;UBERON:0007135!1.34e-14!52;UBERON:0000955!1.87e-13!50;UBERON:0006238!1.87e-13!50;UBERON:0002616!6.71e-13!49;UBERON:0002346!1.14e-11!71;UBERON:0003075!1.14e-11!71;UBERON:0007284!1.14e-11!71;UBERON:0002020!1.18e-11!34;UBERON:0003080!2.49e-11!40;UBERON:0002780!8.95e-11!39;UBERON:0001890!8.95e-11!39;UBERON:0006240!8.95e-11!39;UBERON:0000033!2.66e-10!63;UBERON:0004121!2.50e-09!102;UBERON:0000924!2.50e-09!102;UBERON:0006601!2.50e-09!102;UBERON:0003056!8.16e-09!49;UBERON:0002791!8.30e-09!29;UBERON:0003528!8.30e-09!29;UBERON:0001893!8.30e-09!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.72e-20,54;UBERON:0001049,1.15e-18,52;UBERON:0005068,1.15e-18,52;UBERON:0006241,1.15e-18,52;UBERON:0007135,1.15e-18,52;UBERON:0001017,1.72e-18,73;UBERON:0001016,3.90e-18,75;UBERON:0002020,4.05e-15,34;UBERON:0000955,4.47e-15,47;UBERON:0006238,4.47e-15,47;UBERON:0002346,1.05e-14,64;UBERON:0003075,1.05e-14,64;UBERON:0007284,1.05e-14,64;UBERON:0002616,2.25e-14,46;UBERON:0003080,1.54e-13,40;UBERON:0002780,7.91e-13,39;UBERON:0001890,7.91e-13,39;UBERON:0006240,7.91e-13,39;UBERON:0004121,1.68e-11,95;UBERON:0000924,1.68e-11,95;UBERON:0006601,1.68e-11,95;UBERON:0010371,1.94e-11,73;UBERON:0003528,2.25e-11,29;UBERON:0002791,2.25e-11,29;UBERON:0001893,2.25e-11,29;UBERON:0003056,7.11e-10,49;UBERON:0010314,7.01e-08,92;UBERON:0002420,2.48e-07,8;UBERON:0007245,2.48e-07,8;UBERON:0010009,2.48e-07,8;UBERON:0010011,2.48e-07,8;UBERON:0000454,2.48e-07,8 | |||
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| ||
|short_description=p3@Eif4a1 | |||
}} | }} |
Latest revision as of 00:31, 2 October 2015
Short description: | p3@Eif4a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Eif4a1_5end |
Coexpression cluster: | NA |
Association with transcript: | -22bp_to_ENSMUST00000145289_5end |
EntrezGene: | Eif4a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.99e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.99e-14 | 23 |
neuron | 2.86e-10 | 33 |
neuronal stem cell | 2.86e-10 | 33 |
neuroblast | 2.86e-10 | 33 |
electrically signaling cell | 2.86e-10 | 33 |
electrically responsive cell | 5.17e-10 | 39 |
electrically active cell | 5.17e-10 | 39 |
stem cell | 2.52e-09 | 97 |
somatic stem cell | 7.01e-07 | 91 |
multi fate stem cell | 7.01e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.72e-20 | 54 |
neural tube | 1.15e-18 | 52 |
neural rod | 1.15e-18 | 52 |
future spinal cord | 1.15e-18 | 52 |
neural keel | 1.15e-18 | 52 |
central nervous system | 1.72e-18 | 73 |
nervous system | 3.90e-18 | 75 |
gray matter | 4.05e-15 | 34 |
brain | 4.47e-15 | 47 |
future brain | 4.47e-15 | 47 |
neurectoderm | 1.05e-14 | 64 |
neural plate | 1.05e-14 | 64 |
presumptive neural plate | 1.05e-14 | 64 |
regional part of brain | 2.25e-14 | 46 |
anterior neural tube | 1.54e-13 | 40 |
regional part of forebrain | 7.91e-13 | 39 |
forebrain | 7.91e-13 | 39 |
future forebrain | 7.91e-13 | 39 |
ectoderm-derived structure | 1.68e-11 | 95 |
ectoderm | 1.68e-11 | 95 |
presumptive ectoderm | 1.68e-11 | 95 |
ecto-epithelium | 1.94e-11 | 73 |
brain grey matter | 2.25e-11 | 29 |
regional part of telencephalon | 2.25e-11 | 29 |
telencephalon | 2.25e-11 | 29 |
pre-chordal neural plate | 7.11e-10 | 49 |
structure with developmental contribution from neural crest | 7.01e-08 | 92 |
basal ganglion | 2.48e-07 | 8 |
nuclear complex of neuraxis | 2.48e-07 | 8 |
aggregate regional part of brain | 2.48e-07 | 8 |
collection of basal ganglia | 2.48e-07 | 8 |
cerebral subcortex | 2.48e-07 | 8 |