FFCP PHASE1:Mm9::chr19:56006980..56006993,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=141 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:56006980..56006993,+ | |||
|description=CAGE_peak_at_chr19:56006980..56006993,+ | |||
|id=chr19:56006980..56006993,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,1.76e-25,3;CL:0000117,5.87e-17,23;CL:0000337,5.87e-17,23;CL:0000540,1.01e-11,33;CL:0000047,1.01e-11,33;CL:0000031,1.01e-11,33;CL:0000404,1.01e-11,33;CL:0000120,1.21e-11,3;CL:0002610,1.37e-11,3;CL:0000393,7.39e-10,39;CL:0000211,7.39e-10,39;CL:0002319,6.67e-09,43;CL:0000221,1.09e-08,44;CL:0000133,1.09e-08,44;CL:0002321,7.12e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.42e-15,5;UBERON:0002435,1.42e-15,5;UBERON:0000204,1.42e-15,5;UBERON:0010082,1.42e-15,5;UBERON:0004684,1.37e-11,3;UBERON:0002275,1.37e-11,3;UBERON:0002420,5.80e-10,8;UBERON:0007245,5.80e-10,8;UBERON:0010009,5.80e-10,8;UBERON:0010011,5.80e-10,8;UBERON:0000454,5.80e-10,8 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0.137114433605739,0,0,0,0,0.639969691173627,0.68822784320151,0,0,0.215471232685889,0.380046838912748,0,0.443461021310609,0,0,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0.629484089877886,0.405507724878058,0.183546752161682,0,0.436050312760893,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,4.23192783417626,1.26766280701236,0,0,0,0,0,0,0.384218305321555,0.103689612308478,0,0,0.571301968807607,0.441737081903227,0,0,0,0,1.27687338085188,1.53606533256243,1.71452174049252,5.30628332893976,6.25096044668112,0,0,0.15279824777681,0.294628585473668,0.142371680799103,0.186399445825301,0,0.0755715601067855,0,0.860423876981386,0,0,0,0,0,0.511290967734173,0.519572009205738,0.35333957451034,0.563373679106722,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.22836775943812,0,0.148442139064825,0.346970653532272,0,0.461230994512117,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0.484875253135222,0,0.292780797011547,0,0,0,0,0.127070227073065,0.748953197024114,0,0,0,0,0.20778804455956,0.486723789203273,0.407357455401265,0.497627882440372,0,0,0.130120442962704,0,0,0.30140963567143,0.340182495756639,0.384341160854549,0,0,0.215567992932842,0.189106080167819,0.351902248327898,0.219195732427575,0,0,0,0.995171334092466,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0.308534225774757,0,0.268273401399619,0.116765342367169,0.329119699826961,0,0.162137619091711,0.292399974850665,0.439100230582101,0.134206418760372,0,0,0.660837565967596,0.528901133327089,0.853153002140936,0.464473343720877,0,0,0,0.380451252225118,0.474529061544512,0,0.251335208800269,0,0.38992817423824,0,1.08069024937347,0.597423819763102,0,0.342745537829186,0,0.203651327845314,0,0.280543279561274,0.316182685621286,0.442830443938806,0,0.123397163921801,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0.241177159752417,0,0.287696137450811,0.648540907100142,0,0,0,0.312037673114561,0.505157755894224,0,0.964887042726734,0,0.37898282354097,0.162964976442026,0,0,0.167506257441816,0,0.975668239288994,0.157635144106191,0.221464689648775,0.159454768657487,0,0.345369963731791,0.433947175744535,1.50791283939272,0,0,0,0,0.117211686592203,0.819674726883377,0.252470927204373,0.315508219416257,0.390438744296638,0,0,0,0,0,0.292255857911312,0,0,0.141940085208269,0.534196811001766,0,0,0,0.242780636154981,0,0.188605079755898,0,0,0.258428293168221,0,0,0.948110273807448,0,0,0,0,0.776152102696527,0.428674070063185,0,0.178368817602071,0.164549020602121,0.608929898229199,0,0,0,0,0.161464426695906,0.361877549568935,0.238744688006273,0,0,0,0.341741761595705,0.206386867963223,0.185194527369712,0.565105371014073,0.136694227721025,0,0.169978429993855,0.139951452323658,0,0,0,0.203319467126849,0.108005340821801,0.418176592028937,0.87345025498471,0.404593039154462,0.330613822901344,0,0.90730481304255,0,0,0.598066184175915,0.66183396182839,0.194451188344048,0,0.168956125490778,0.117357238645754,0.2604087696879,0.209718688851422,0.241584120826006,0,0,0.202725215290164,0.308132871494482,0.25984164595559,0,0,0,0,0,0,0.201652370273681,0.0974578807397524,0,0.116876902181569,0,0.221985953374065,0.0897138566094757,0.167884616364078,0,0,0,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0.399024873401031,1.19513524027894,0,0.209613162627982,0,0,0.412070114477788,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0,0.588795680537589,0,0.177475806159338,0,0,0,0.25384382367503,0.365855945745545,0.526139422875686,0.407412341537585,0,0.118635018124174,0.29551344712669,0,0.309873682371932,0,0,0.467863216890817,0,0,0,0 | |phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0.137114433605739,0,0,0,0,0.639969691173627,0.68822784320151,0,0,0.215471232685889,0.380046838912748,0,0.443461021310609,0,0,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0.629484089877886,0.405507724878058,0.183546752161682,0,0.436050312760893,0.219686182734472,0.194429899074283,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,4.23192783417626,1.26766280701236,0,0,0,0,0,0,0.384218305321555,0.103689612308478,0,0,0.571301968807607,0.441737081903227,0,0,0,0,1.27687338085188,1.53606533256243,1.71452174049252,5.30628332893976,6.25096044668112,0,0,0.15279824777681,0.294628585473668,0.142371680799103,0.186399445825301,0,0.0755715601067855,0,0.860423876981386,0,0,0,0,0,0.511290967734173,0.519572009205738,0.35333957451034,0.563373679106722,1.28326477414318,0,0,0.216491041011214,0.253359865475099,0.505524445014783,0.22836775943812,0,0.148442139064825,0.346970653532272,0,0.461230994512117,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0.484875253135222,0,0.292780797011547,0,0,0,0,0.127070227073065,0.748953197024114,0,0,0,0,0.20778804455956,0.486723789203273,0.407357455401265,0.497627882440372,0,0,0.130120442962704,0,0,0.30140963567143,0.340182495756639,0.384341160854549,0,0,0.215567992932842,0.189106080167819,0.351902248327898,0.219195732427575,0,0,0,0.995171334092466,0,0,0,0.207125772535502,0,0.180062061461015,0,0,0.308534225774757,0,0.268273401399619,0.116765342367169,0.329119699826961,0,0.162137619091711,0.292399974850665,0.439100230582101,0.134206418760372,0,0,0.660837565967596,0.528901133327089,0.853153002140936,0.464473343720877,0,0,0,0.380451252225118,0.474529061544512,0,0.251335208800269,0,0.38992817423824,0,1.08069024937347,0.597423819763102,0,0.342745537829186,0,0.203651327845314,0,0.280543279561274,0.316182685621286,0.442830443938806,0,0.123397163921801,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0.241177159752417,0,0.287696137450811,0.648540907100142,0,0,0,0.312037673114561,0.505157755894224,0,0.964887042726734,0,0.37898282354097,0.162964976442026,0,0,0.167506257441816,0,0.975668239288994,0.157635144106191,0.221464689648775,0.159454768657487,0,0.345369963731791,0.433947175744535,1.50791283939272,0,0,0,0,0.117211686592203,0.819674726883377,0.252470927204373,0.315508219416257,0.390438744296638,0,0,0,0,0,0.292255857911312,0,0,0.141940085208269,0.534196811001766,0,0,0,0.242780636154981,0,0.188605079755898,0,0,0.258428293168221,0,0,0.948110273807448,0,0,0,0,0.776152102696527,0.428674070063185,0,0.178368817602071,0.164549020602121,0.608929898229199,0,0,0,0,0.161464426695906,0.361877549568935,0.238744688006273,0,0,0,0.341741761595705,0.206386867963223,0.185194527369712,0.565105371014073,0.136694227721025,0,0.169978429993855,0.139951452323658,0,0,0,0.203319467126849,0.108005340821801,0.418176592028937,0.87345025498471,0.404593039154462,0.330613822901344,0,0.90730481304255,0,0,0.598066184175915,0.66183396182839,0.194451188344048,0,0.168956125490778,0.117357238645754,0.2604087696879,0.209718688851422,0.241584120826006,0,0,0.202725215290164,0.308132871494482,0.25984164595559,0,0,0,0,0,0,0.201652370273681,0.0974578807397524,0,0.116876902181569,0,0.221985953374065,0.0897138566094757,0.167884616364078,0,0,0,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.518936737920883,0.399024873401031,1.19513524027894,0,0.209613162627982,0,0,0.412070114477788,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.192075457214608,0.114870937911227,0,0,0.192909220463705,0,0.588795680537589,0,0.177475806159338,0,0,0,0.25384382367503,0.365855945745545,0.526139422875686,0.407412341537585,0,0.118635018124174,0.29551344712669,0,0.309873682371932,0,0,0.467863216890817,0,0,0,0 | ||
|short_description=p@chr19:56006980..56006993,+ | |||
}} | }} |
Latest revision as of 09:07, 4 August 2015
Short description: | p@chr19:56006980..56006993, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:56006980..56006993, + |
Coexpression cluster: | MCL_coexpression_mm9:141 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 1.76e-25 | 3 |
CNS neuron (sensu Vertebrata) | 5.87e-17 | 23 |
neuroblast (sensu Vertebrata) | 5.87e-17 | 23 |
neuron | 1.01e-11 | 33 |
neuronal stem cell | 1.01e-11 | 33 |
neuroblast | 1.01e-11 | 33 |
electrically signaling cell | 1.01e-11 | 33 |
granule cell | 1.21e-11 | 3 |
raphe nuclei neuron | 1.37e-11 | 3 |
electrically responsive cell | 7.39e-10 | 39 |
electrically active cell | 7.39e-10 | 39 |
neural cell | 6.67e-09 | 43 |
ectodermal cell | 1.09e-08 | 44 |
neurectodermal cell | 1.09e-08 | 44 |
embryonic cell | 7.12e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 1.42e-15 | 5 |
striatum | 1.42e-15 | 5 |
ventral part of telencephalon | 1.42e-15 | 5 |
future corpus striatum | 1.42e-15 | 5 |
raphe nuclei | 1.37e-11 | 3 |
reticular formation | 1.37e-11 | 3 |
basal ganglion | 5.80e-10 | 8 |
nuclear complex of neuraxis | 5.80e-10 | 8 |
aggregate regional part of brain | 5.80e-10 | 8 |
collection of basal ganglia | 5.80e-10 | 8 |
cerebral subcortex | 5.80e-10 | 8 |