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FFCP PHASE1:Mm9::chr3:107989250..107989325,+: Difference between revisions

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{{FFCP
{{FFCP
|id=chr3:107989250..107989325,+
|DHSsupport=NA
|short_description=p1@Amigo1
|DPIdataset=NA
|description=CAGE_peak_1_at_Amigo1_5end
|association_with_transcript=0bp_to_ENSMUST00000050909,ENSMUST00000106656,ENSMUST00000106659,ENSMUST00000106661,NM_001004293,NM_146137,uc008qyg.1,uc008qyh.1_5end
|EntrezGene=229715
|EntrezGene=229715
|HGNC=
|HGNC=
|MCL_coexpression_id=1
|TSSclassifier=NA
|UniProt=Q80ZD8,A2AE38,A2AE39
|UniProt=Q80ZD8,A2AE38,A2AE39
|association_with_transcript=0bp_to_ENSMUST00000050909,ENSMUST00000106656,ENSMUST00000106659,ENSMUST00000106661,NM_001004293,NM_146137,uc008qyg.1,uc008qyh.1_5end
|cluster_id=chr3:107989250..107989325,+
|description=CAGE_peak_1_at_Amigo1_5end
|id=chr3:107989250..107989325,+
|ontology_enrichment_celltype=CL:0000117!4.91e-12!23;CL:0000337!4.91e-12!23;CL:0002319!5.28e-12!43;CL:0000540!5.31e-12!33;CL:0000047!5.31e-12!33;CL:0000031!5.31e-12!33;CL:0000404!5.31e-12!33;CL:0000221!6.81e-12!44;CL:0000133!6.81e-12!44;CL:0000055!2.11e-09!50;CL:0000393!6.26e-09!39;CL:0000211!6.26e-09!39
|ontology_enrichment_celltype_v019_2=CL:0000117,4.86e-12,23;CL:0000337,4.86e-12,23;CL:0000540,5.25e-12,33;CL:0000047,5.25e-12,33;CL:0000031,5.25e-12,33;CL:0000404,5.25e-12,33;CL:0002319,5.67e-12,43;CL:0000221,7.29e-12,44;CL:0000133,7.29e-12,44;CL:0000393,6.22e-09,39;CL:0000211,6.22e-09,39
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0004121!7.95e-30!102;UBERON:0000924!7.95e-30!102;UBERON:0006601!7.95e-30!102;UBERON:0001017!2.91e-28!73;UBERON:0005743!2.91e-28!73;UBERON:0000073!1.10e-27!75;UBERON:0001016!1.10e-27!75;UBERON:0000033!1.38e-23!63;UBERON:0002346!6.95e-23!71;UBERON:0003075!6.95e-23!71;UBERON:0007284!6.95e-23!71;UBERON:0001049!2.05e-22!52;UBERON:0005068!2.05e-22!52;UBERON:0006241!2.05e-22!52;UBERON:0007135!2.05e-22!52;UBERON:0000955!7.54e-22!50;UBERON:0006238!7.54e-22!50;UBERON:0002616!4.24e-21!49;UBERON:0002020!1.06e-18!34;UBERON:0003056!2.41e-18!49;UBERON:0003080!1.12e-17!40;UBERON:0002780!5.12e-17!39;UBERON:0001890!5.12e-17!39;UBERON:0006240!5.12e-17!39;UBERON:0002791!4.35e-16!29;UBERON:0003528!4.35e-16!29;UBERON:0001893!4.35e-16!29;UBERON:0000956!8.29e-12!21;UBERON:0001869!8.29e-12!21;UBERON:0000203!8.29e-12!21;UBERON:0002619!3.35e-10!17;UBERON:0004111!8.96e-10!122;UBERON:0007811!5.01e-09!86;UBERON:0000153!2.20e-08!94;UBERON:0000468!3.86e-08!333;UBERON:0000025!6.29e-08!114;UBERON:0002021!1.22e-07!10;UBERON:0000411!1.22e-07!10;UBERON:0001950!1.22e-07!10
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.45e-29,95;UBERON:0000924,1.45e-29,95;UBERON:0006601,1.45e-29,95;UBERON:0001017,3.14e-28,73;UBERON:0001016,1.18e-27,75;UBERON:0000073,7.28e-24,54;UBERON:0010371,2.25e-23,73;UBERON:0002346,4.83e-23,64;UBERON:0003075,4.83e-23,64;UBERON:0007284,4.83e-23,64;UBERON:0001049,2.23e-22,52;UBERON:0005068,2.23e-22,52;UBERON:0006241,2.23e-22,52;UBERON:0007135,2.23e-22,52;UBERON:0000955,9.84e-20,47;UBERON:0006238,9.84e-20,47;UBERON:0010314,2.81e-19,92;UBERON:0002616,5.32e-19,46;UBERON:0002020,1.05e-18,34;UBERON:0003056,2.37e-18,49;UBERON:0003080,1.10e-17,40;UBERON:0002780,5.05e-17,39;UBERON:0001890,5.05e-17,39;UBERON:0006240,5.05e-17,39;UBERON:0003528,4.29e-16,29;UBERON:0002791,4.29e-16,29;UBERON:0001893,4.29e-16,29;UBERON:0000956,8.21e-12,21;UBERON:0001869,8.21e-12,21;UBERON:0000203,8.21e-12,21;UBERON:0002619,3.33e-10,17;UBERON:0004111,9.22e-10,122;UBERON:0000025,6.46e-08,114;UBERON:0002021,1.22e-07,10;UBERON:0000411,1.22e-07,10;UBERON:0001950,1.22e-07,10
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912976044,5.83267379813068,16.776161453347,1.12738587736838,3.13984746692355,3.30916980914195,2.72231663681667,2.71235629303235,3.04121025883401,3.16864544343536,3.77592716047455,4.71867049915699,2.17425708743405,4.32045009386798,2.52808896502543,4.25722952109345,2.56777392912068,1.94881234466693,1.25318686967237,1.78813219303138,1.32214994471966,0.738447635872886,1.11063094942962,0.914481679859998,1.71404514732629,1.94915761479505,1.25075394132428,1.8700304349051,12.923631866067,7.10355050797007,3.85769583420746,1.67884616364078,17.1938738688649,5.81815673898664,5.12824547948342,6.21668299329291,19.5613120573792,54.2161768912384,55.6993536173684,42.3942679945154,54.1337524382616,54.1215190618807,64.2084812781245,45.9015300157628,68.4488228900815,69.7839309835675,55.9181136691966,2.69847103718859,5.1873233542134,8.36594668195257,6.56388136084394,6.91723436672342,7.35374033800057,12.0013233012872,10.5077879191836,6.09746498224449,12.8875577999537,12.673964994512,12.6379648728671,9.17686773204848,10.8842759088278,9.41941690872058,7.1444053692461,12.6313915279892,13.1178269915319,10.3021475200827,9.12633304833263,12.343293085875,9.40621772644489,10.2527561677348,12.0637525804833,10.6343599869324,10.6614405943512,11.5244622909847,12.3642764375786,8.69146328613515,18.5176949647054,11.6262317761691,10.9339975436875,11.4584692087513,10.8455788830176,10.4169569929816,15.7380664100906,11.2287172053796,12.0327790267047,17.0246615541271,13.4560765662904,11.5933917810211
|phase1_expression=11.2104192973356,1.04692622291808,1.36499771816861,0.90739263392049,1.00179145989269,4.36486106970913,3.73780224952841,1.42035655785734,4.78681655315667,6.31974221069382,3.08192342805909,3.82906363177615,2.05440875917447,2.36035086531293,0.999329285446988,0.607425802169478,0,1.57731082679119,1.64537320326887,0.42438965179803,14.8825757764372,0.695036658406197,0.261199789138935,3.35984087866154,1.83527424853736,1.72269589234506,2.58457197695445,3.66301095566011,2.85035129184561,2.52030129759931,5.32153225572731,4.44521471421742,3.69038872550742,15.8481681015439,2.02196133825892,5.98444723290572,8.77928231928187,0.418531630736908,0,0.523523743973798,0.588231488031014,0,0,7.1761186246079,7.19776211658553,1.65192076945513,0.782391344348039,11.3373081317832,14.4992880604751,17.1098311185369,6.29938897314131,11.5002051491977,1.51004345451963,0.725362142011344,1.34437519656986,1.54355661621568,4.29800159908135,1.54701627683233,20.0293296251002,25.9205579843296,29.7900759647904,2.71075625655306,0,4.04954872776629,5.93319817540185,4.9733608046227,10.1864037576258,13.4476406862544,12.8575119262512,16.8757422914613,12.8298226424343,25.1372866275347,25.6207507503872,12.1265891222804,11.5973019932066,22.0612508786405,83.6880695595354,56.9485527859937,53.3014670399165,22.2887826264028,17.199676997253,19.7947080811569,51.3696718162541,47.8348218526928,42.9363076252836,23.8649154233671,25.6269025438385,23.4863301739879,3.63485727999283,9.3708734532414,11.0148505706638,7.74381489283248,0.679971333707751,9.17495425784289,1.94932925234301,4.03224198387602,12.2186645514624,1.1930122580464,0.779358013808606,2.12003744706204,6.90132756905734,1.28326477414318,0,0,1.73192832808971,2.78695852022608,1.51657333504435,10.1623652949963,3.10725460376606,18.7037095221679,5.55153045651635,8.22056791442781,5.5347719341454,7.83757730873637,6.93773372100658,9.29932775839599,2.96633961281249,10.2665543413137,3.5384422077995,9.38247729694973,6.8460870722722,4.363877278217,5.59175283654366,43.6243387547205,43.9838084308256,3.0654846625031,1.07833612055328,2.99951365496704,0.762421362438388,56.620861695023,59.0175777636028,22.1151659718641,63.2720525499886,59.8374170152973,61.7130492341893,42.182728397617,3.7680564624617,5.72272064806428,9.09801930361229,11.5743020737561,6.11566081924707,5.9774547152703,9.90341713929421,10.5493372485001,7.75616090325138,9.99287018221828,12.7434345401231,15.78090561508,3.44908788692548,3.9712276835242,7.2139960907219,7.67185063496512,5.28289773528636,9.05455632957633,8.0255033199098,3.78165106955137,1.40442637462647,0.772043721344145,0.852490498186778,3.52113813310353,4.22146907965973,3.6012412292203,4.26140524053378,5.3126342571799,5.24508183817086,6.74348439776183,5.633741429392,4.2035523252181,6.25327429671226,8.86504306027114,10.0525323836861,9.5029991826466,13.3925570327541,12.3469905259542,57.1988660094426,19.7576855768226,0.991256348951394,5.28901133327089,3.62590025909898,4.41249676534833,3.60828891701861,2.62188582010345,5.11469500843202,6.08722003560189,3.79623249235609,6.0938613247884,5.52937459360593,5.57078121715222,6.62877896205008,8.08937467788799,4.10662294761919,7.36822711041159,7.39704813717019,4.79843752960861,4.50830942692322,4.48032921259691,4.46090720485539,4.97964321221262,5.88099795255593,6.05201606716369,7.37894020854462,10.2419646055094,10.6722945751374,0.500535317148282,1.37591296579242,1.12431056192427,1.82574109249653,2.894125917029,3.05551022137704,3.16465751195892,6.97181475132652,3.84385978463314,2.87536413054709,2.97712758134803,4.99260276983297,6.06189307073068,4.12614051100398,7.23665282045051,11.2699446001629,2.4633883530163,2.93336957595647,2.71592137240301,2.58159273117352,3.35012514883632,4.76087281772027,5.26860849216057,4.88668946729192,5.3151525515706,3.6674596791222,5.73521601505083,6.73471429276993,7.81104916340163,1.50791283939272,0,5.4094070032094,5.24279817978992,51.2156382061056,43.1339006659308,1.47541450839008,19.1877904675323,6.31016438832513,5.46614242015294,13.3562506594335,5.01834475700359,9.58034298554295,6.51076020814315,9.71545684019746,18.704374906324,16.2067988958075,99.6096080907602,8.65834519770439,6.05423052468668,6.8412522928502,11.0529982391599,9.2921596837974,6.06951590387454,6.04647113929502,3.01768127609437,7.67784921490009,7.07100840271033,7.49442050187841,7.99774204850512,6.06045543254026,9.7971394960103,10.5418608574999,8.25084345985495,29.2778060948258,5.04171063287669,7.37344497561701,6.21577401591618,8.51233121482913,8.74007206250146,8.72109809191241,18.5723618959906,2.58138878870081,2.33015277950202,35.7256004849038,15.0046490176747,10.4951877352339,8.02161901544473,10.0272768962635,9.52017218521355,7.57850175237612,46.5417508046379,1.36696704638282,2.88941615148511,3.1483069652851,1.13021074202815,1.0935538217682,0.915112692826091,1.35982743995084,1.25956307091292,1.65839968565309,5.72802370809068,2.05618395827738,4.47302827679067,4.96824567780286,4.80903080833278,5.8957892211468,6.06889558731693,8.34799902825893,3.92633912976044,5.83267379813068,16.776161453347,1.12738587736838,3.13984746692355,3.30916980914195,2.72231663681667,2.71235629303235,3.04121025883401,3.16864544343536,3.77592716047455,4.71867049915699,2.17425708743405,4.32045009386798,2.52808896502543,4.25722952109345,2.56777392912068,1.94881234466693,1.25318686967237,1.78813219303138,1.32214994471966,0.738447635872886,1.11063094942962,0.914481679859998,1.71404514732629,1.94915761479505,1.25075394132428,1.8700304349051,12.923631866067,7.10355050797007,3.85769583420746,1.67884616364078,17.1938738688649,5.81815673898664,5.12824547948342,6.21668299329291,19.5613120573792,54.2161768912384,55.6993536173684,42.3942679945154,54.1337524382616,54.1215190618807,64.2084812781245,45.9015300157628,68.4488228900815,69.7839309835675,55.9181136691966,2.69847103718859,5.1873233542134,8.36594668195257,6.56388136084394,6.91723436672342,7.35374033800057,12.0013233012872,10.5077879191836,6.09746498224449,12.8875577999537,12.673964994512,12.6379648728671,9.17686773204848,10.8842759088278,9.41941690872058,7.1444053692461,12.6313915279892,13.1178269915319,10.3021475200827,9.12633304833263,12.343293085875,9.40621772644489,10.2527561677348,12.0637525804833,10.6343599869324,10.6614405943512,11.5244622909847,12.3642764375786,8.69146328613515,18.5176949647054,11.6262317761691,10.9339975436875,11.4584692087513,10.8455788830176,10.4169569929816,15.7380664100906,11.2287172053796,12.0327790267047,17.0246615541271,13.4560765662904,11.5933917810211
|short_description=p1@Amigo1
}}
}}

Latest revision as of 07:24, 27 September 2015

Short description:p1@Amigo1
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Amigo1_5end
Coexpression cluster:MCL_coexpression_mm9:1
Association with transcript: 0bp_to_ENSMUST00000050909, ENSMUST00000106656, ENSMUST00000106659, ENSMUST00000106661, NM_001004293, NM_146137, uc008qyg.1, uc008qyh.1_5end
EntrezGene:Amigo1
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Amigo1

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G711.21
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I51.05
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I61.36
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.91
CD326+ enterocyte, pool2.CNhs13197.11849-124I41.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I74.36
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I83.74
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.42
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E74.79
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F26.32
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E63.08
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F13.83
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E42.05
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E82.36
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A11.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.61
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A21.58
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A41.65
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.42
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A314.88
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.70
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.26
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D13.36
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D21.84
GP2+ M cell, pool1.CNhs13228.11845-124H91.72
GP2+ M cell, pool2.CNhs13231.11846-124I12.58
GP2+ M cell, pool3.CNhs13240.11847-124I23.66
Ileum epithelium, pool1.CNhs13199.10252-104B92.85
Ileum epithelium, pool2.CNhs13232.10253-104C12.52
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C85.32
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I34.45
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G63.69
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E915.85
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F52.02
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F65.98
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F78.78
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.42
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.52
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.59
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D87.18
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D97.20
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B31.65
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.78
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C211.34
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B814.50
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C317.11
Mouse Astrocytes, donor2.CNhs12078.11552-120C46.30
Mouse Astrocytes, donor3.CNhs12107.11633-122C411.50
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A21.51
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.73
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A11.34
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C11.54
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E14.30
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C51.55
Mouse Granule cells, donor1.CNhs12131.11713-123C320.03
Mouse Granule cells, donor2.CNhs12357.11731-123E325.92
Mouse Granule cells, donor3.CNhs12108.11636-122C729.79
Mouse Meningeal cells, donor1.CNhs12132.11716-123C62.71
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C74.05
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E75.93
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D24.97
Mouse Microglia, donor1.CNhs12629.11718-123C810.19
Mouse Microglia, donor2.CNhs12634.11736-123E813.45
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D512.86
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F516.88
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D912.83
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F125.14
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D525.62
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D212.13
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F211.60
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D622.06
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D383.69
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F356.95
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D753.30
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D422.29
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F417.20
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D819.79
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E451.37
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E547.83
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I642.94
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D623.86
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F625.63
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E123.49
Mouse Schwann, donor1.CNhs12507.11728-123D93.63
Mouse Schwann, donor2.CNhs12573.11746-123F99.37
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G311.01
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F77.74
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.68
Mouse hepatocyte, donor3.CNhs12615.11637-122C89.17
Mouse hepatocyte, donor6.CNhs13090.11822-124F41.95
Mouse hepatocyte, donor8.CNhs13091.11824-124F64.03
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A712.22
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I71.19
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.78
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I82.12
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G66.90
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H11.28
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G11.73
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G22.79
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G31.52
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B610.16
accessory axillary lymph node, adult.CNhs10475.1063-29H93.11
adrenal gland, adult.CNhs10508.49-24D718.70
adrenal gland, embryo E14.CNhs11038.406-44C55.55
adrenal gland, embryo E16.CNhs11004.1254-43D68.22
adrenal gland, embryo E17.CNhs11043.1263-45I15.53
adrenal gland, embryo E18.CNhs11026.1262-18F57.84
adrenal gland, neonate N00.CNhs11191.1311-23C16.94
adrenal gland, neonate N25.CNhs11223.1377-27I39.30
amnion, adult pregnant day17.5.CNhs10488.583-22A82.97
aorta, adult.CNhs10498.46-23H110.27
bone (os femoris), adult.CNhs10483.56-12G23.54
bone (os femoris), neonate N02.CNhs11227.1985-43F59.38
bone (os femoris), neonate N16.CNhs11225.1525-43A66.85
bone (os femoris), neonate N20.CNhs11195.1350-25C34.36
cecum, adult.CNhs10467.37-13H45.59
cerebellum, adult.CNhs10494.15-8B243.62
cerebellum, neonate N30.CNhs11135.1395-42I243.98
colon, adult.CNhs10468.36-18H73.07
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C71.08
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D13.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.76
corpora quadrigemina, adult.CNhs10501.16-22A456.62
corpus striatum, adult.CNhs10487.19-21D859.02
corpus striatum, neonate N00.CNhs11226.630-43F122.12
cortex, adult.CNhs10473.12-14D563.27
cortex, neonate N30.CNhs11107.1392-42F259.84
diencephalon, adult.CNhs10482.20-12F261.71
diencephalon, neonate N30.CNhs11201.1388-42B242.18
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B13.77
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A25.72
epididymis, adult.CNhs10490.58-23B29.10
eyeball, adult.CNhs10484.31-12G411.57
eyeball, embryo E12.CNhs11016.345-16C66.12
eyeball, embryo E14.CNhs10521.399-16E25.98
eyeball, embryo E15.CNhs10593.426-16C99.90
eyeball, embryo E17.CNhs11023.1261-18D410.55
eyeball, neonate N00.CNhs11207.633-15C67.76
eyeball, neonate N01.CNhs11140.1532-43E79.99
eyeball, neonate N02.CNhs11205.1551-44G812.74
eyeball, neonate N16.CNhs11188.777-19A215.78
forelimb, embryo E11.CNhs10596.335-25E23.45
forelimb, embryo E12.CNhs10600.359-14H23.97
forelimb, embryo E13.CNhs10589.384-1E27.21
forelimb, embryo E14.CNhs10577.413-26A87.67
forelimb, embryo E15.CNhs11007.437-20E75.28
forelimb, embryo E17.CNhs10598.1517-43C49.05
forelimb, embryo E18.CNhs11008.1520-43B58.03
gonad, embryo E13.CNhs11044.1564-45I63.78
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C81.40
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.77
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.85
heart, embryo E11.CNhs10586.331-24E93.52
heart, embryo E12.CNhs11015.353-12F54.22
heart, embryo E13.CNhs11013.376-3I93.60
heart, embryo E14.CNhs10597.403-26D44.26
heart, embryo E15.CNhs11017.431-16C85.31
heart, embryo E16.CNhs11021.457-17C65.25
heart, embryo E17.CNhs11025.479-18E56.74
heart, embryo E18.CNhs11030.1283-20G35.63
heart, neonate N00.CNhs11213.639-21E34.20
heart, neonate N03.CNhs11221.1349-25I26.25
heart, neonate N10.CNhs11118.749-24G18.87
heart, neonate N16.CNhs11209.782-15G110.05
heart, neonate N20.CNhs11127.821-26I69.50
heart, neonate N25.CNhs11196.1351-25D313.39
heart, neonate N30.CNhs11202.1390-42D212.35
hippocampus, adult.CNhs10478.13-16E857.20
hippocampus, neonate N00.CNhs11228.627-43G119.76
intestinal mucosa, adult.CNhs10506.860-29I30.99
intestine, adult.CNhs10496.178-9A35.29
intestine, embryo E12.CNhs11019.1251-16I53.63
intestine, embryo E13.CNhs11010.381-16D54.41
intestine, embryo E15.CNhs10602.976-16D83.61
intestine, embryo E16.CNhs10585.463-22H42.62
intestine, embryo E17.CNhs10582.482-18D35.11
intestine, embryo E18.CNhs10526.1289-20F76.09
intestine, neonate N00.CNhs11126.644-26D13.80
intestine, neonate N01.CNhs11192.1322-23E96.09
intestine, neonate N06.CNhs11102.688-20B85.53
intestine, neonate N07.CNhs11095.720-20F25.57
intestine, neonate N10.CNhs11098.755-23A56.63
intestine, neonate N20.CNhs11187.827-18D18.09
intestine, neonate N25.CNhs11121.1352-25E34.11
intestine, neonate N30.CNhs11131.1384-42G17.37
kidney, embryo E14.CNhs10606.411-4I97.40
kidney, embryo E15.CNhs10997.434-16F84.80
kidney, embryo E16.CNhs10584.464-22A54.51
kidney, embryo E17.CNhs11028.483-18I24.48
kidney, embryo E18.CNhs11001.1288-20C74.46
kidney, neonate N00.CNhs11214.646-21G74.98
kidney, neonate N10.CNhs11206.758-6D55.88
kidney, neonate N20.CNhs11113.832-19I16.05
kidney, neonate N25.CNhs11122.1353-25F37.38
kidney, neonate N30.CNhs11203.1385-42H110.24
liver, adult pregnant day01.CNhs10466.508-5B210.67
liver, embryo E12.CNhs10601.355-15F80.50
liver, embryo E13.CNhs10524.378-3H61.38
liver, embryo E14.CNhs10594.409-16E11.12
liver, embryo E15.CNhs10520.433-16D71.83
liver, embryo E16.CNhs10523.462-17F52.89
liver, embryo E17.CNhs10510.481-18A33.06
liver, embryo E18.CNhs10579.499-43G43.16
liver, neonate N00.CNhs11117.641-24F46.97
liver, neonate N03.CNhs11123.1345-25G23.84
liver, neonate N06.CNhs11101.684-20A82.88
liver, neonate N07.CNhs11103.716-20H22.98
liver, neonate N10.CNhs11115.751-24B94.99
liver, neonate N20.CNhs11220.823-25A36.06
liver, neonate N25.CNhs11198.1368-26H14.13
liver, neonate N30.CNhs11106.1382-42D17.24
lung, adult.CNhs10474.28-22B111.27
lung, embryo E12.CNhs10522.354-16G22.46
lung, embryo E14.CNhs10604.404-26F82.93
lung, embryo E15.CNhs11020.432-17C52.72
lung, embryo E16.CNhs10998.458-17B62.58
lung, embryo E17.CNhs10605.480-44A63.35
lung, embryo E18.CNhs10583.1287-20I64.76
lung, neonate N00.CNhs11224.640-42C65.27
lung, neonate N06.CNhs11212.683-20E54.89
lung, neonate N07.CNhs11111.715-19A35.32
lung, neonate N10.CNhs11219.750-23E63.67
lung, neonate N20.CNhs11109.822-18A45.74
lung, neonate N25.CNhs11119.1359-25C76.73
lung, neonate N30.CNhs11133.1394-42H27.81
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A11.51
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B65.41
mammary gland, adult pregnant day19.CNhs10476.588-5H25.24
medulla oblongata, adult.CNhs10477.17-12C251.22
medulla oblongata, neonate N30.CNhs11200.1396-42A343.13
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C71.48
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C219.19
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E16.31
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E25.47
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E313.36
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D75.02
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D89.58
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D96.51
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D49.72
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D518.70
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D616.21
olfactory brain, adult.CNhs10489.18-22I999.61
ovary, adult.CNhs10507.91-2I78.66
ovary, embryo E18.CNhs11040.505-44H76.05
ovary, neonate N00.CNhs11217.1299-22I46.84
oviduct, adult pregnant day01.CNhs10500.988-6G611.05
pancreas, adult.CNhs10486.34-16E49.29
pancreas, embryo E14.CNhs11012.405-44F46.07
pancreas, embryo E15.CNhs11042.1556-45F26.05
pancreas, embryo E16.CNhs11003.460-26E53.02
pancreas, embryo E17.CNhs10599.1558-45G37.68
pancreas, embryo E18.CNhs10580.1535-43I77.07
pancreas, neonate N00.CNhs11105.645-26G97.49
pancreas, neonate N01.CNhs11138.1531-43D78.00
pancreas, neonate N02.CNhs11139.1539-43D86.06
pancreas, neonate N16.CNhs11136.787-43B69.80
pancreas, neonate N25.CNhs11094.1555-45E210.54
pancreas, neonate N30.CNhs11182.1548-44H58.25
pituitary gland, adult.CNhs10493.21-1G829.28
pituitary gland, embryo E12.CNhs11018.346-16E65.04
pituitary gland, embryo E13.CNhs11009.370-44C77.37
pituitary gland, embryo E14.CNhs11037.398-44A56.22
pituitary gland, embryo E15.CNhs10592.427-16B98.51
pituitary gland, embryo E16.CNhs11036.449-43F68.74
pituitary gland, embryo E17.CNhs11039.1265-44F58.72
pituitary gland, neonate N00.CNhs11190.1308-22E918.57
placenta, adult pregnant day10.CNhs10472.539-13I72.58
placenta, adult pregnant day17.CNhs10464.577-18G32.33
prostate, adult.CNhs10470.859-1F835.73
skin, adult.CNhs10492.30-1C315.00
skin, neonate N00.CNhs11124.650-25G410.50
skin, neonate N03.CNhs11215.662-22H38.02
skin, neonate N06.CNhs11097.693-20I510.03
skin, neonate N10.CNhs11108.762-6C49.52
small intestine, neonate N16.CNhs11114.790-21I17.58
spinal cord, adult.CNhs10505.24-13C946.54
spleen, adult.CNhs10465.25-2G21.37
spleen, embryo E16.CNhs11035.461-43C12.89
spleen, embryo E18.CNhs11011.1271-21F23.15
spleen, neonate N10.CNhs11116.752-24D11.13
spleen, neonate N20.CNhs11112.824-19H11.09
spleen, neonate N25.CNhs11099.1354-25G30.92
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C61.36
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C91.26
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D31.66
stomach, adult.CNhs10503.33-1H65.73
stomach, embryo E12.CNhs10588.356-43E32.06
stomach, embryo E15.CNhs10603.1252-16G84.47
stomach, embryo E16.CNhs11022.459-17D44.97
stomach, embryo E17.CNhs11006.1035-18D54.81
stomach, embryo E18.CNhs10999.1286-20C65.90
stomach, neonate N03.CNhs11193.1340-24B86.07
stomach, neonate N07.CNhs11210.718-18A98.35
stomach, neonate N25.CNhs11104.1355-25E43.93
stomach, neonate N30.CNhs11134.1386-42I15.83
submandibular gland, adult.CNhs10469.59-29C116.78
testis, adult.CNhs10504.57-7G51.13
testis, embryo E13.CNhs11031.389-23F53.14
testis, embryo E15.CNhs11034.443-27C53.31
testis, embryo E16.CNhs11033.470-26G52.72
testis, embryo E17.CNhs11029.486-18I52.71
testis, embryo E18.CNhs11027.503-18G53.04
testis, neonate N00.CNhs11189.1300-22B73.17
testis, neonate N07.CNhs11222.726-26I43.78
testis, neonate N10.CNhs11204.763-44D94.72
testis, neonate N20.CNhs11110.839-18H32.17
testis, neonate N30.CNhs11130.1391-42E24.32
thymus, adult.CNhs10471.38-12B52.53
thymus, embryo E14.CNhs11041.402-44I44.26
thymus, embryo E15.CNhs11005.430-45I22.57
thymus, embryo E16.CNhs11002.456-26C51.95
thymus, embryo E17.CNhs10581.478-18C11.25
thymus, embryo E18.CNhs10595.1273-19G41.79
thymus, neonate N02.CNhs11181.1541-43F81.32
thymus, neonate N03.CNhs11137.2104-43C70.74
thymus, neonate N06.CNhs11197.681-26C41.11
thymus, neonate N07.CNhs11211.713-19D30.91
thymus, neonate N10.CNhs11194.748-24E41.71
thymus, neonate N20.CNhs11186.820-7A21.95
thymus, neonate N25.CNhs11125.1362-25G71.25
thymus, neonate N30.CNhs11132.1393-42G21.87
tongue, adult.CNhs10499.32-1B412.92
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H37.10
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F73.86
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G51.68
urinary bladder, adult.CNhs10481.879-12E417.19
uterus, adult pregnant day19.CNhs10497.590-15F55.82
uterus, adult.CNhs10509.92-27E55.13
vagina, adult.CNhs10502.89-27D56.22
vesicular gland, adult.CNhs10491.51-27F819.56
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A154.22
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A255.70
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A342.39
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D754.13
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A454.12
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A564.21
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A645.90
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A768.45
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A869.78
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A955.92
whole body, embryo E11.CNhs11014.324-5I82.70
whole body, embryo E12.CNhs10587.857-27C95.19
whole body, embryo E13.CNhs10512.372-23H28.37
whole body, embryo E14.5.CNhs10578.420-27D26.56
whole body, embryo E14.CNhs10519.395-14B16.92
whole body, embryo E16.CNhs10514.453-14F27.35
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G512.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G510.51
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G56.10
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G512.89
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G512.67
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G512.64
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G59.18
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G510.88
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G59.42
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G57.14
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G512.63
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G513.12
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G510.30
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G59.13
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G512.34
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G59.41
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G510.25
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G512.06
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G510.63
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G510.66
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G511.52
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G512.36
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G58.69
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G518.52
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G511.63
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G510.93
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G511.46
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G510.85
whole body, embryo E17.5.CNhs10513.490-9F910.42
whole body, embryo E17.CNhs10517.475-3I515.74
whole body, embryo E18.CNhs10516.493-3B311.23
whole body, neonate N00.CNhs10525.657-19C212.03
whole body, neonate N01.CNhs10576.659-23C617.02
whole body, neonate N06.CNhs10515.692-21D113.46
whole body, neonate N10.CNhs10518.761-6B411.59





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)4.86e-1223
neuroblast (sensu Vertebrata)4.86e-1223
neuron5.25e-1233
neuronal stem cell5.25e-1233
neuroblast5.25e-1233
electrically signaling cell5.25e-1233
neural cell5.67e-1243
ectodermal cell7.29e-1244
neurectodermal cell7.29e-1244
electrically responsive cell6.22e-0939
electrically active cell6.22e-0939

Uber anatomy
Ontology termp-valuen
ectoderm-derived structure1.45e-2995
ectoderm1.45e-2995
presumptive ectoderm1.45e-2995
central nervous system3.14e-2873
nervous system1.18e-2775
regional part of nervous system7.28e-2454
ecto-epithelium2.25e-2373
neurectoderm4.83e-2364
neural plate4.83e-2364
presumptive neural plate4.83e-2364
neural tube2.23e-2252
neural rod2.23e-2252
future spinal cord2.23e-2252
neural keel2.23e-2252
brain9.84e-2047
future brain9.84e-2047
structure with developmental contribution from neural crest2.81e-1992
regional part of brain5.32e-1946
gray matter1.05e-1834
pre-chordal neural plate2.37e-1849
anterior neural tube1.10e-1740
regional part of forebrain5.05e-1739
forebrain5.05e-1739
future forebrain5.05e-1739
brain grey matter4.29e-1629
regional part of telencephalon4.29e-1629
telencephalon4.29e-1629
cerebral cortex8.21e-1221
cerebral hemisphere8.21e-1221
pallium8.21e-1221
regional part of cerebral cortex3.33e-1017
anatomical conduit9.22e-10122
tube6.46e-08114
occipital lobe1.22e-0710
visual cortex1.22e-0710
neocortex1.22e-0710
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