FFCP PHASE1:Mm9::chr5:125342530..125342574,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr5:125342530..125342574,- to FFCP PHASE1:Mm9::chr5:125342530..125342574,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=215707 | |EntrezGene=215707 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=709 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VDN4 | |UniProt=Q8VDN4 | ||
|association_with_transcript=16bp_to_NM_144819,uc008zqr.1_5end | |||
|cluster_id=chr5:125342530..125342574,- | |||
|description=CAGE_peak_2_at_Ccdc92_5end | |||
|id=chr5:125342530..125342574,- | |||
|ontology_enrichment_celltype=CL:0000117!2.52e-10!23;CL:0000337!2.52e-10!23;CL:0000221!2.21e-09!44;CL:0000133!2.21e-09!44;CL:0002319!2.51e-09!43;CL:0000540!9.05e-08!33;CL:0000047!9.05e-08!33;CL:0000031!9.05e-08!33;CL:0000404!9.05e-08!33;CL:0000055!2.49e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-10,23;CL:0000337,1.04e-10,23;CL:0000221,2.50e-09,44;CL:0000133,2.50e-09,44;CL:0002319,2.87e-09,43;CL:0000540,8.69e-08,33;CL:0000047,8.69e-08,33;CL:0000031,8.69e-08,33;CL:0000404,8.69e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.19e-25!75;UBERON:0001016!9.19e-25!75;UBERON:0001017!1.48e-24!73;UBERON:0005743!1.48e-24!73;UBERON:0004121!3.78e-24!102;UBERON:0000924!3.78e-24!102;UBERON:0006601!3.78e-24!102;UBERON:0001049!1.33e-22!52;UBERON:0005068!1.33e-22!52;UBERON:0006241!1.33e-22!52;UBERON:0007135!1.33e-22!52;UBERON:0000033!1.63e-22!63;UBERON:0000955!4.68e-22!50;UBERON:0006238!4.68e-22!50;UBERON:0002616!1.97e-21!49;UBERON:0002346!7.42e-21!71;UBERON:0003075!7.42e-21!71;UBERON:0007284!7.42e-21!71;UBERON:0003056!4.35e-18!49;UBERON:0007811!3.14e-17!86;UBERON:0003080!3.92e-17!40;UBERON:0000153!5.74e-17!94;UBERON:0002780!1.84e-16!39;UBERON:0001890!1.84e-16!39;UBERON:0006240!1.84e-16!39;UBERON:0002020!1.69e-15!34;UBERON:0002791!3.61e-13!29;UBERON:0003528!3.61e-13!29;UBERON:0001893!3.61e-13!29;UBERON:0000956!2.12e-09!21;UBERON:0001869!2.12e-09!21;UBERON:0000203!2.12e-09!21;UBERON:0002619!6.38e-08!17;UBERON:0000475!1.23e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.81e-26,95;UBERON:0000924,9.81e-26,95;UBERON:0006601,9.81e-26,95;UBERON:0001016,3.10e-25,75;UBERON:0001017,5.14e-25,73;UBERON:0000073,9.22e-25,54;UBERON:0002346,2.37e-23,64;UBERON:0003075,2.37e-23,64;UBERON:0007284,2.37e-23,64;UBERON:0001049,2.65e-23,52;UBERON:0005068,2.65e-23,52;UBERON:0006241,2.65e-23,52;UBERON:0007135,2.65e-23,52;UBERON:0010371,3.34e-23,73;UBERON:0000955,1.51e-20,47;UBERON:0006238,1.51e-20,47;UBERON:0002616,6.52e-20,46;UBERON:0003056,8.22e-19,49;UBERON:0003080,8.15e-18,40;UBERON:0002780,4.10e-17,39;UBERON:0001890,4.10e-17,39;UBERON:0006240,4.10e-17,39;UBERON:0002020,4.14e-16,34;UBERON:0003528,1.12e-13,29;UBERON:0002791,1.12e-13,29;UBERON:0001893,1.12e-13,29;UBERON:0010314,1.95e-12,92;UBERON:0000956,9.63e-10,21;UBERON:0001869,9.63e-10,21;UBERON:0000203,9.63e-10,21;UBERON:0002619,3.36e-08,17 | |||
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| ||
|short_description=p2@Ccdc92 | |||
}} | }} |
Latest revision as of 21:59, 1 October 2015
Short description: | p2@Ccdc92 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ccdc92_5end |
Coexpression cluster: | MCL_coexpression_mm9:709 |
Association with transcript: | 16bp_to_NM_144819, uc008zqr.1_5end |
EntrezGene: | Ccdc92 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.04e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-10 | 23 |
ectodermal cell | 2.50e-09 | 44 |
neurectodermal cell | 2.50e-09 | 44 |
neural cell | 2.87e-09 | 43 |
neuron | 8.69e-08 | 33 |
neuronal stem cell | 8.69e-08 | 33 |
neuroblast | 8.69e-08 | 33 |
electrically signaling cell | 8.69e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 9.81e-26 | 95 |
ectoderm | 9.81e-26 | 95 |
presumptive ectoderm | 9.81e-26 | 95 |
nervous system | 3.10e-25 | 75 |
central nervous system | 5.14e-25 | 73 |
regional part of nervous system | 9.22e-25 | 54 |
neurectoderm | 2.37e-23 | 64 |
neural plate | 2.37e-23 | 64 |
presumptive neural plate | 2.37e-23 | 64 |
neural tube | 2.65e-23 | 52 |
neural rod | 2.65e-23 | 52 |
future spinal cord | 2.65e-23 | 52 |
neural keel | 2.65e-23 | 52 |
ecto-epithelium | 3.34e-23 | 73 |
brain | 1.51e-20 | 47 |
future brain | 1.51e-20 | 47 |
regional part of brain | 6.52e-20 | 46 |
pre-chordal neural plate | 8.22e-19 | 49 |
anterior neural tube | 8.15e-18 | 40 |
regional part of forebrain | 4.10e-17 | 39 |
forebrain | 4.10e-17 | 39 |
future forebrain | 4.10e-17 | 39 |
gray matter | 4.14e-16 | 34 |
brain grey matter | 1.12e-13 | 29 |
regional part of telencephalon | 1.12e-13 | 29 |
telencephalon | 1.12e-13 | 29 |
structure with developmental contribution from neural crest | 1.95e-12 | 92 |
cerebral cortex | 9.63e-10 | 21 |
cerebral hemisphere | 9.63e-10 | 21 |
pallium | 9.63e-10 | 21 |
regional part of cerebral cortex | 3.36e-08 | 17 |