FFCP PHASE1:Mm9::chr16:42340708..42340743,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14432 | |EntrezGene=14432 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=P06837 | |UniProt=P06837 | ||
|association_with_transcript=20bp_to_ENSMUST00000102817,NM_008083,uc007zfv.1_5end | |association_with_transcript=20bp_to_ENSMUST00000102817,NM_008083,uc007zfv.1_5end | ||
|cluster_id=chr16:42340708..42340743,- | |||
|description=CAGE_peak_2_at_Gap43_5end | |description=CAGE_peak_2_at_Gap43_5end | ||
|id=chr16:42340708..42340743,- | |id=chr16:42340708..42340743,- | ||
|ontology_enrichment_celltype=CL:0000540!3.42e-17!33;CL:0000047!3.42e-17!33;CL:0000031!3.42e-17!33;CL:0000404!3.42e-17!33;CL:0000117!1.40e-14!23;CL:0000337!1.40e-14!23;CL:0000221!1.95e-14!44;CL:0000133!1.95e-14!44;CL:0002319!2.14e-14!43;CL:0000393!1.55e-12!39;CL:0000211!1.55e-12!39;CL:0000055!3.04e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.87e-18,33;CL:0000047,4.87e-18,33;CL:0000031,4.87e-18,33;CL:0000404,4.87e-18,33;CL:0000117,2.77e-15,23;CL:0000337,2.77e-15,23;CL:0000221,9.25e-15,44;CL:0000133,9.25e-15,44;CL:0002319,1.03e-14,43;CL:0000393,1.07e-12,39;CL:0000211,1.07e-12,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.01e-28!73;UBERON:0005743!2.01e-28!73;UBERON:0000073!2.80e-28!75;UBERON:0001016!2.80e-28!75;UBERON:0004121!1.53e-26!102;UBERON:0000924!1.53e-26!102;UBERON:0006601!1.53e-26!102;UBERON:0002346!6.76e-24!71;UBERON:0003075!6.76e-24!71;UBERON:0007284!6.76e-24!71;UBERON:0001049!4.61e-21!52;UBERON:0005068!4.61e-21!52;UBERON:0006241!4.61e-21!52;UBERON:0007135!4.61e-21!52;UBERON:0000033!2.39e-19!63;UBERON:0000955!4.03e-19!50;UBERON:0006238!4.03e-19!50;UBERON:0002616!6.58e-19!49;UBERON:0002020!2.83e-18!34;UBERON:0003056!2.70e-17!49;UBERON:0003080!6.06e-16!40;UBERON:0002780!2.36e-15!39;UBERON:0001890!2.36e-15!39;UBERON:0006240!2.36e-15!39;UBERON:0002791!9.46e-15!29;UBERON:0003528!9.46e-15!29;UBERON:0001893!9.46e-15!29;UBERON:0000956!1.02e-09!21;UBERON:0001869!1.02e-09!21;UBERON:0000203!1.02e-09!21;UBERON:0000468!8.97e-09!333;UBERON:0002619!2.45e-08!17;UBERON:0000153!3.16e-08!94;UBERON:0007811!4.00e-08!86;UBERON:0002021!7.02e-07!10;UBERON:0000411!7.02e-07!10;UBERON:0001950!7.02e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-29,73;UBERON:0001016,1.84e-29,75;UBERON:0004121,1.62e-26,95;UBERON:0000924,1.62e-26,95;UBERON:0006601,1.62e-26,95;UBERON:0002346,2.62e-24,64;UBERON:0003075,2.62e-24,64;UBERON:0007284,2.62e-24,64;UBERON:0000073,2.30e-23,54;UBERON:0001049,7.45e-22,52;UBERON:0005068,7.45e-22,52;UBERON:0006241,7.45e-22,52;UBERON:0007135,7.45e-22,52;UBERON:0010371,1.14e-21,73;UBERON:0002020,3.52e-19,34;UBERON:0010314,6.13e-19,92;UBERON:0003056,2.69e-18,49;UBERON:0000955,7.52e-18,47;UBERON:0006238,7.52e-18,47;UBERON:0002616,1.26e-17,46;UBERON:0003080,7.04e-17,40;UBERON:0002780,2.96e-16,39;UBERON:0001890,2.96e-16,39;UBERON:0006240,2.96e-16,39;UBERON:0003528,1.83e-15,29;UBERON:0002791,1.83e-15,29;UBERON:0001893,1.83e-15,29;UBERON:0000956,3.69e-10,21;UBERON:0001869,3.69e-10,21;UBERON:0000203,3.69e-10,21;UBERON:0002619,1.05e-08,17;UBERON:0002021,3.60e-07,10;UBERON:0000411,3.60e-07,10;UBERON:0001950,3.60e-07,10 | |||
|phase1_expression=6.08565618998217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7564935226605,0,0,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.550640256485045,0.782391344348039,1.52617609466313,2.63623419281366,1.1665793944457,2.2397827460058,2.87505128729943,0.167782606057736,0,0.336093799142464,0.514518872071894,1.14613375975503,0,121.389876515759,161.871239657242,103.948350175013,1.35537812827653,0.889294796111139,0.449949858640699,0.988866362566974,0,5.09320187881288,3.84218305321555,19.7010263386108,24.436074838036,22.0841209418951,125.972084122077,131.637650407162,41.2793993354395,42.2678527190422,27.5765635983006,51.7544640697127,94.1055681687833,109.214245145189,169.86953859649,229.176547224036,237.015583603326,78.7296057183894,89.4792549950371,87.2477994805586,131.993606292203,176.683255871687,116.872452532463,1.96888102666279,9.67315969366855,0.579728977403356,0,0,0,0,0.448026887097336,2.66844398250329,0,0,0,6.05626705039726,0,0,0,0,0,0,2.05530983494308,0,0.445326417194474,19.9508125781056,21.9215144384742,16.3737003051802,23.0605640045513,18.4614270203057,0.628332956648377,0,0.578397427679647,0,3.88240439873782,0.220841518460394,0,0,26.9358333250623,37.0720671059815,0.255457055208591,0,0,0,65.7580906987172,41.1750542536764,109.821903746643,61.012336387489,61.88314067394,83.9463700020623,88.9082121611312,2.24046600470696,0.248813941220186,0,2.10441855886474,8.45782879257574,17.2426578325105,22.8678904852794,23.9620660358787,17.1451977861346,19.4732854832972,16.1166966242734,4.65666067330228,3.44908788692548,5.29497024469894,3.51902248327898,5.47989331068937,6.67313398141435,3.83077383174383,7.40815691068596,2.58744546864041,0,0,0,6.21377317606506,4.69052119962192,9.00310307305074,3.07768156260773,5.90292695242211,4.47374627373397,4.65067889500816,1.87791380979733,1.75148013550754,1.97471819896177,1.64167464079095,0.324275238183423,0,1.09775057645525,0.402619256281115,35.7492912559016,102.595898542147,0.660837565967596,0.528901133327089,10.2378360256912,9.98617688999886,5.54130083685001,5.44545516483025,5.55945109612176,4.94586627892654,1.89811624617805,4.28217282282428,6.78605063760728,4.17808591286417,2.14460495831032,1.79763881730844,1.51296634912286,0.597423819763102,2.84501851429623,7.08340778180319,0,1.01825663922657,1.55161989734101,1.26244475802573,0.189709611372772,0,0,0,0,2.33583148002532,0.982794975566015,0.224862112384854,1.21716072833102,0.241177159752417,1.01850340712568,0,0.810676133875177,0.549122826376163,0,0,0.312037673114561,0,0.179397413521912,0,2.77129785249907,3.60033682363921,3.7481944581666,3.56464680127895,5.16318546234705,2.84760637651087,2.85652369063216,2.73187107000918,3.62560831444239,4.65075848262427,4.9430978283821,5.07976275618788,4.66249451037918,2.16973587872267,0,0,0,0,35.9633321572654,58.254208236325,0,0,17.0374438484779,12.8844785617891,22.8348801596767,14.8160654730582,40.5493586829957,41.6122500259584,19.02610297872,28.6410740753086,29.6465833459893,16.3873871375122,0.141940085208269,3.02711526234334,2.93196526836437,0.659880491890142,0,10.9251286269742,5.74414758233027,2.64047111658257,2.36241514304618,2.76691633149535,2.06742634534577,2.90826983582004,2.85197902707777,1.8962205476149,1.05418608574999,0,0,7.56256594931503,5.17434735131018,6.64444808597936,5.32020700926821,16.2315624017884,20.7331765958672,13.700922710157,1.64270195644597,0.21183207086382,1.54369878638473,0.65954501176592,4.84393280087717,4.52346936961169,3.22305328808468,3.28281799490123,2.33184669303881,30.5951748317341,0,4.54051109519089,2.59272338317596,0,0.136694227721025,0.228778173206523,0,0,0,0.954670618015114,7.43389584915668,6.30290348093231,7.66837919834789,7.94535524854981,6.55087691238533,6.87808166562586,6.28166263512553,1.04702376793612,1.94422459937689,0,0,0.747582730219894,0.496375471371293,0.194451188344048,0.258319646955462,0.506868376472335,0.469428954583016,0.13020438484395,0,0,0,0,2.43270258348197,2.46506297195585,0.77952493786677,1.43221356533985,0,0.360586348559907,0.738447635872886,0.201932899896295,0.228620419965,0.302478555410522,0,0,0.116876902181569,0.680191150845634,0.221985953374065,0,0.671538465456314,2.89784391048286,1.50145980360946,0.915758121336325,2.57242054894879,0,110.126609310328,83.318867807799,102.548296905652,59.1174947262285,45.900528824633,54.3883606120584,59.4019800203989,37.8269810708345,45.3142408984205,51.2582708634302,26.0506242436283,28.7297908848742,17.9270286041841,15.8019366094391,28.7170032800336,29.7826483689023,18.2242316797324,21.0155758383672,16.6877988987744,21.7319602116866,15.9691958930851,20.5602712110823,26.1259805840972,22.2807530368945,25.2141708715142,20.0043350338891,22.8292122111365,24.3065617784268,30.4943566594447,23.5518272215036,26.7438016860624,25.9114676992633,28.3739066037312,21.6566160782169,25.5036420925546,25.0459239359362,26.1587001208065,28.6745985467249,24.7163487199468,24.1291176812828,18.9816028998679,23.4440668053841,20.0523211153148,22.0010314484072,14.6609024345667,29.4776481966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| |phase1_expression=6.08565618998217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7564935226605,0,0,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.550640256485045,0.782391344348039,1.52617609466313,2.63623419281366,1.1665793944457,2.2397827460058,2.87505128729943,0.167782606057736,0,0.336093799142464,0.514518872071894,1.14613375975503,0,121.389876515759,161.871239657242,103.948350175013,1.35537812827653,0.889294796111139,0.449949858640699,0.988866362566974,0,5.09320187881288,3.84218305321555,19.7010263386108,24.436074838036,22.0841209418951,125.972084122077,131.637650407162,41.2793993354395,42.2678527190422,27.5765635983006,51.7544640697127,94.1055681687833,109.214245145189,169.86953859649,229.176547224036,237.015583603326,78.7296057183894,89.4792549950371,87.2477994805586,131.993606292203,176.683255871687,116.872452532463,1.96888102666279,9.67315969366855,0.579728977403356,0,0,0,0,0.448026887097336,2.66844398250329,0,0,0,6.05626705039726,0,0,0,0,0,0,2.05530983494308,0,0.445326417194474,19.9508125781056,21.9215144384742,16.3737003051802,23.0605640045513,18.4614270203057,0.628332956648377,0,0.578397427679647,0,3.88240439873782,0.220841518460394,0,0,26.9358333250623,37.0720671059815,0.255457055208591,0,0,0,65.7580906987172,41.1750542536764,109.821903746643,61.012336387489,61.88314067394,83.9463700020623,88.9082121611312,2.24046600470696,0.248813941220186,0,2.10441855886474,8.45782879257574,17.2426578325105,22.8678904852794,23.9620660358787,17.1451977861346,19.4732854832972,16.1166966242734,4.65666067330228,3.44908788692548,5.29497024469894,3.51902248327898,5.47989331068937,6.67313398141435,3.83077383174383,7.40815691068596,2.58744546864041,0,0,0,6.21377317606506,4.69052119962192,9.00310307305074,3.07768156260773,5.90292695242211,4.47374627373397,4.65067889500816,1.87791380979733,1.75148013550754,1.97471819896177,1.64167464079095,0.324275238183423,0,1.09775057645525,0.402619256281115,35.7492912559016,102.595898542147,0.660837565967596,0.528901133327089,10.2378360256912,9.98617688999886,5.54130083685001,5.44545516483025,5.55945109612176,4.94586627892654,1.89811624617805,4.28217282282428,6.78605063760728,4.17808591286417,2.14460495831032,1.79763881730844,1.51296634912286,0.597423819763102,2.84501851429623,7.08340778180319,0,1.01825663922657,1.55161989734101,1.26244475802573,0.189709611372772,0,0,0,0,2.33583148002532,0.982794975566015,0.224862112384854,1.21716072833102,0.241177159752417,1.01850340712568,0,0.810676133875177,0.549122826376163,0,0,0.312037673114561,0,0.179397413521912,0,2.77129785249907,3.60033682363921,3.7481944581666,3.56464680127895,5.16318546234705,2.84760637651087,2.85652369063216,2.73187107000918,3.62560831444239,4.65075848262427,4.9430978283821,5.07976275618788,4.66249451037918,2.16973587872267,0,0,0,0,35.9633321572654,58.254208236325,0,0,17.0374438484779,12.8844785617891,22.8348801596767,14.8160654730582,40.5493586829957,41.6122500259584,19.02610297872,28.6410740753086,29.6465833459893,16.3873871375122,0.141940085208269,3.02711526234334,2.93196526836437,0.659880491890142,0,10.9251286269742,5.74414758233027,2.64047111658257,2.36241514304618,2.76691633149535,2.06742634534577,2.90826983582004,2.85197902707777,1.8962205476149,1.05418608574999,0,0,7.56256594931503,5.17434735131018,6.64444808597936,5.32020700926821,16.2315624017884,20.7331765958672,13.700922710157,1.64270195644597,0.21183207086382,1.54369878638473,0.65954501176592,4.84393280087717,4.52346936961169,3.22305328808468,3.28281799490123,2.33184669303881,30.5951748317341,0,4.54051109519089,2.59272338317596,0,0.136694227721025,0.228778173206523,0,0,0,0.954670618015114,7.43389584915668,6.30290348093231,7.66837919834789,7.94535524854981,6.55087691238533,6.87808166562586,6.28166263512553,1.04702376793612,1.94422459937689,0,0,0.747582730219894,0.496375471371293,0.194451188344048,0.258319646955462,0.506868376472335,0.469428954583016,0.13020438484395,0,0,0,0,2.43270258348197,2.46506297195585,0.77952493786677,1.43221356533985,0,0.360586348559907,0.738447635872886,0.201932899896295,0.228620419965,0.302478555410522,0,0,0.116876902181569,0.680191150845634,0.221985953374065,0,0.671538465456314,2.89784391048286,1.50145980360946,0.915758121336325,2.57242054894879,0,110.126609310328,83.318867807799,102.548296905652,59.1174947262285,45.900528824633,54.3883606120584,59.4019800203989,37.8269810708345,45.3142408984205,51.2582708634302,26.0506242436283,28.7297908848742,17.9270286041841,15.8019366094391,28.7170032800336,29.7826483689023,18.2242316797324,21.0155758383672,16.6877988987744,21.7319602116866,15.9691958930851,20.5602712110823,26.1259805840972,22.2807530368945,25.2141708715142,20.0043350338891,22.8292122111365,24.3065617784268,30.4943566594447,23.5518272215036,26.7438016860624,25.9114676992633,28.3739066037312,21.6566160782169,25.5036420925546,25.0459239359362,26.1587001208065,28.6745985467249,24.7163487199468,24.1291176812828,18.9816028998679,23.4440668053841,20.0523211153148,22.0010314484072,14.6609024345667,29.4776481966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| ||
|short_description=p2@Gap43 | |short_description=p2@Gap43 | ||
}} | }} |
Latest revision as of 00:29, 2 October 2015
Short description: | p2@Gap43 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gap43_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 20bp_to_ENSMUST00000102817, NM_008083, uc007zfv.1_5end |
EntrezGene: | Gap43 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.87e-18 | 33 |
neuronal stem cell | 4.87e-18 | 33 |
neuroblast | 4.87e-18 | 33 |
electrically signaling cell | 4.87e-18 | 33 |
CNS neuron (sensu Vertebrata) | 2.77e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.77e-15 | 23 |
ectodermal cell | 9.25e-15 | 44 |
neurectodermal cell | 9.25e-15 | 44 |
neural cell | 1.03e-14 | 43 |
electrically responsive cell | 1.07e-12 | 39 |
electrically active cell | 1.07e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.30e-29 | 73 |
nervous system | 1.84e-29 | 75 |
ectoderm-derived structure | 1.62e-26 | 95 |
ectoderm | 1.62e-26 | 95 |
presumptive ectoderm | 1.62e-26 | 95 |
neurectoderm | 2.62e-24 | 64 |
neural plate | 2.62e-24 | 64 |
presumptive neural plate | 2.62e-24 | 64 |
regional part of nervous system | 2.30e-23 | 54 |
neural tube | 7.45e-22 | 52 |
neural rod | 7.45e-22 | 52 |
future spinal cord | 7.45e-22 | 52 |
neural keel | 7.45e-22 | 52 |
ecto-epithelium | 1.14e-21 | 73 |
gray matter | 3.52e-19 | 34 |
structure with developmental contribution from neural crest | 6.13e-19 | 92 |
pre-chordal neural plate | 2.69e-18 | 49 |
brain | 7.52e-18 | 47 |
future brain | 7.52e-18 | 47 |
regional part of brain | 1.26e-17 | 46 |
anterior neural tube | 7.04e-17 | 40 |
regional part of forebrain | 2.96e-16 | 39 |
forebrain | 2.96e-16 | 39 |
future forebrain | 2.96e-16 | 39 |
brain grey matter | 1.83e-15 | 29 |
regional part of telencephalon | 1.83e-15 | 29 |
telencephalon | 1.83e-15 | 29 |
cerebral cortex | 3.69e-10 | 21 |
cerebral hemisphere | 3.69e-10 | 21 |
pallium | 3.69e-10 | 21 |
regional part of cerebral cortex | 1.05e-08 | 17 |
occipital lobe | 3.60e-07 | 10 |
visual cortex | 3.60e-07 | 10 |
neocortex | 3.60e-07 | 10 |