FFCP PHASE1:Mm9::chr13:43399487..43399499,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=328232 | |EntrezGene=328232 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1647 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UHD2 | |UniProt=Q3UHD2 | ||
|association_with_transcript=41bp_to_ENSMUST00000055341,NM_001033399,uc007qfx.1,uc007qfy.1_5end | |association_with_transcript=41bp_to_ENSMUST00000055341,NM_001033399,uc007qfx.1,uc007qfy.1_5end | ||
|cluster_id=chr13:43399487..43399499,- | |||
|description=CAGE_peak_2_at_Gfod1_5end | |description=CAGE_peak_2_at_Gfod1_5end | ||
|id=chr13:43399487..43399499,- | |id=chr13:43399487..43399499,- | ||
|ontology_enrichment_celltype=CL:0000838!4.73e-07!12 | |ontology_enrichment_celltype=CL:0000838!4.73e-07!12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.27e-12,12;CL:0000084,3.12e-11,11;CL:0000827,3.12e-11,11;CL:0000542,3.14e-11,13;CL:0000051,3.14e-11,13;CL:0000988,9.30e-10,32;CL:0002032,9.30e-10,32;CL:0000037,9.30e-10,32;CL:0000837,9.30e-10,32;CL:0000791,1.45e-08,9;CL:0000789,1.45e-08,9;CL:0002420,1.45e-08,9;CL:0002419,1.45e-08,9;CL:0000790,1.45e-08,9;CL:0000738,5.03e-08,17;CL:0002087,5.03e-08,17;CL:0000624,1.06e-07,8 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002021!9.49e-07!10;UBERON:0000411!9.49e-07!10;UBERON:0001950!9.49e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.33e-12,10;UBERON:0000411,2.33e-12,10;UBERON:0001950,2.33e-12,10;UBERON:0001049,6.36e-10,52;UBERON:0005068,6.36e-10,52;UBERON:0006241,6.36e-10,52;UBERON:0007135,6.36e-10,52;UBERON:0000073,2.36e-09,54;UBERON:0002020,3.15e-09,34;UBERON:0000955,1.88e-08,47;UBERON:0006238,1.88e-08,47;UBERON:0002619,6.09e-08,17;UBERON:0003528,1.11e-07,29;UBERON:0002791,1.11e-07,29;UBERON:0001893,1.11e-07,29;UBERON:0002616,1.20e-07,46;UBERON:0002780,2.31e-07,39;UBERON:0001890,2.31e-07,39;UBERON:0006240,2.31e-07,39;UBERON:0000956,3.08e-07,21;UBERON:0001869,3.08e-07,21;UBERON:0000203,3.08e-07,21;UBERON:0003080,4.45e-07,40;UBERON:0002346,5.42e-07,64;UBERON:0003075,5.42e-07,64;UBERON:0007284,5.42e-07,64;UBERON:0001017,5.46e-07,73 | |||
|phase1_expression=0.640595388419176,0.348975407639361,0.454999239389536,0.90739263392049,0.500895729946347,0.33575854382378,0,1.67860320474049,7.46180227403834,7.72412936862578,3.76679530096111,4.70655738072485,0.342401459862411,0.611942816932982,0,0,0,0.315462165358238,0.411343300817216,0,0.680346321208558,2.18440092641948,3.91799683708403,0.319984845586813,0.22940928106717,0,0.430761996159075,0,0.380046838912748,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,1.25559489221072,0.7813353445238,1.57057123192139,0,0.683045484958446,0.971020706062307,0.125896817975577,0.405507724878058,0.183546752161682,0,0,0.439372365468944,0,0,0,1.67782606057736,2.90144856804538,1.00828139742739,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0,0.135005938331691,0,1.14260393761521,2.42955395046775,0,0.0958454710182364,0,2.20231761998777,0.893811366596314,0.921639199537461,0.263772575460388,0.274462930807229,0,2.23346399201105,0.56276261003168,1.68078072554491,0.294628585473668,1.13897344639282,0.559198337475902,0.151452386666368,0.151143120213571,1.73918693221007,0,0.679971333707751,0,0,0,0.561777680527007,0,0.519572009205738,0.35333957451034,0,0,0,0,0.216491041011214,0,0,0.45673551887624,0,0.29688427812965,0.346970653532272,0,0.230615497256059,0.301445281105245,0.117588707135705,0.376999773989026,0,0,0.884610551949874,0.323533699894818,0,0.484875253135222,0,3.22058876712702,4.81727425670947,0.255457055208591,5.51149572727233,5.39912457894067,3.43089613097275,0.748953197024114,1.37250180845588,0.376963056338593,1.56441888173049,2.55715457330331,1.0389402227978,1.29793010454206,0.203678727700633,0.746441823660558,0,0.841767423545896,0.520481771850815,0.229902104433473,0,0.452114453507145,0.136072998302656,0.12811372028485,0.281105173679186,0.776110112217047,0,0.189106080167819,0,0,0.278047249225598,0.696504333044333,0.411564272815887,0,1.40442637462647,2.57347907114715,2.55747149456033,0.207125772535502,0.703578179943289,0.180062061461015,0.23674473558521,0,0.462801338662135,0.465067889500816,0.536546802799238,1.40118410840603,0.658239399653922,0.492502392237286,1.62137619091711,1.90059983652932,1.97595103761946,1.61047702512446,1.89260953707715,0.308713837137853,0.660837565967596,0.528901133327089,0.213288250535234,0,0.128867461322093,0.201683524623343,0.444756087689741,0,0.474529061544512,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0,0.597423819763102,0,0,0,0,0,0.350679099451593,0.316182685621286,0,0,0,0,0,0,0,0.405720242777006,0.482354319504834,0.50925170356284,0.575392274901621,0.324270453550071,0,1.43768206527355,0.372140947668503,0.624075346229121,0,0.179397413521912,0,1.29327233116623,0.189491411770485,0.162964976442026,0,0.234690248288502,0.670025029767263,0.714130922658041,0.975668239288994,0.472905432318573,0.44292937929755,0.637819074629948,0.81931657357869,0.690739927463582,0.433947175744535,0,0,0,0.275936746304732,0.80275294993896,0.820481806145422,0.491804836130026,1.51482556322624,0,0,0,0.238968797952552,0.222798674082394,0,0.809621403349789,0,0,2.89189184779626,0.141940085208269,0,0.162886959353576,0.494910368917606,1.32745138339963,0,0,0,0,0,0,0.727067458955011,0.712994756769443,0.632073515871632,0,0,0.680879211507576,0,0,0.214337035031592,0.177340233642274,0,0.164549020602121,1.2178597964584,0.938686832254841,0.21183207086382,0.441056796109924,0.32977250588296,0.807322133479528,0.603129249281559,0.835606408021955,0.328281799490123,0.582961673259701,2.03967832211561,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,7.30907248973578,5.03825228365169,6.08079884739465,0,0.158167996790568,0.203319467126849,0,0,0,0.539457385539283,0.41326727862668,0.523511883968059,0.388844919875379,1.24267862617385,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0.410843828659309,0.51968329191118,0,0,0.480781798079875,0.590758108698309,0.100966449948148,0.457240839929999,0.403304740547362,0.0974578807397524,0.384847366561318,0.701261413089414,0.226730383615211,0,0.179427713218951,0.335769232728157,0,0.375364950902364,0.183151624267265,0.214368379079066,1.00314420807073,0.564751842617067,4.14292712856459,3.43737308063638,1.71853182343688,4.11049511862385,4.5323633843382,1.35004500046361,4.05289082901798,2.26571204492102,2.07104124700728,0,0,0,0.729320151204882,0.209613162627982,0,0.666740183404846,0,0.962757628775446,1.01078884705519,0.25347929989024,0.188626341386076,0.37456602987953,0.192075457214608,0.17230640686684,0,0.347652977834566,0.578727661391115,0.412085900803307,0.294397840268795,0,0.532427418478012,0,0.290692833264657,0.282328141245992,0.169229215783353,0.365855945745545,0.526139422875686,0,0.561142271657738,0.474540072496697,0.591026894253381,0,0.154936841185966,0.385813221962283,0.249810577937946,0.701794825336225,0.214871054048298,0.191288332068843,0,0 | |phase1_expression=0.640595388419176,0.348975407639361,0.454999239389536,0.90739263392049,0.500895729946347,0.33575854382378,0,1.67860320474049,7.46180227403834,7.72412936862578,3.76679530096111,4.70655738072485,0.342401459862411,0.611942816932982,0,0,0,0.315462165358238,0.411343300817216,0,0.680346321208558,2.18440092641948,3.91799683708403,0.319984845586813,0.22940928106717,0,0.430761996159075,0,0.380046838912748,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,1.25559489221072,0.7813353445238,1.57057123192139,0,0.683045484958446,0.971020706062307,0.125896817975577,0.405507724878058,0.183546752161682,0,0,0.439372365468944,0,0,0,1.67782606057736,2.90144856804538,1.00828139742739,0,0,0,0.606949382578793,0.528990979272033,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0,0.135005938331691,0,1.14260393761521,2.42955395046775,0,0.0958454710182364,0,2.20231761998777,0.893811366596314,0.921639199537461,0.263772575460388,0.274462930807229,0,2.23346399201105,0.56276261003168,1.68078072554491,0.294628585473668,1.13897344639282,0.559198337475902,0.151452386666368,0.151143120213571,1.73918693221007,0,0.679971333707751,0,0,0,0.561777680527007,0,0.519572009205738,0.35333957451034,0,0,0,0,0.216491041011214,0,0,0.45673551887624,0,0.29688427812965,0.346970653532272,0,0.230615497256059,0.301445281105245,0.117588707135705,0.376999773989026,0,0,0.884610551949874,0.323533699894818,0,0.484875253135222,0,3.22058876712702,4.81727425670947,0.255457055208591,5.51149572727233,5.39912457894067,3.43089613097275,0.748953197024114,1.37250180845588,0.376963056338593,1.56441888173049,2.55715457330331,1.0389402227978,1.29793010454206,0.203678727700633,0.746441823660558,0,0.841767423545896,0.520481771850815,0.229902104433473,0,0.452114453507145,0.136072998302656,0.12811372028485,0.281105173679186,0.776110112217047,0,0.189106080167819,0,0,0.278047249225598,0.696504333044333,0.411564272815887,0,1.40442637462647,2.57347907114715,2.55747149456033,0.207125772535502,0.703578179943289,0.180062061461015,0.23674473558521,0,0.462801338662135,0.465067889500816,0.536546802799238,1.40118410840603,0.658239399653922,0.492502392237286,1.62137619091711,1.90059983652932,1.97595103761946,1.61047702512446,1.89260953707715,0.308713837137853,0.660837565967596,0.528901133327089,0.213288250535234,0,0.128867461322093,0.201683524623343,0.444756087689741,0,0.474529061544512,0.164698954724011,0.251335208800269,0,0.19496408711912,0,0,0.597423819763102,0,0,0,0,0,0.350679099451593,0.316182685621286,0,0,0,0,0,0,0,0.405720242777006,0.482354319504834,0.50925170356284,0.575392274901621,0.324270453550071,0,1.43768206527355,0.372140947668503,0.624075346229121,0,0.179397413521912,0,1.29327233116623,0.189491411770485,0.162964976442026,0,0.234690248288502,0.670025029767263,0.714130922658041,0.975668239288994,0.472905432318573,0.44292937929755,0.637819074629948,0.81931657357869,0.690739927463582,0.433947175744535,0,0,0,0.275936746304732,0.80275294993896,0.820481806145422,0.491804836130026,1.51482556322624,0,0,0,0.238968797952552,0.222798674082394,0,0.809621403349789,0,0,2.89189184779626,0.141940085208269,0,0.162886959353576,0.494910368917606,1.32745138339963,0,0,0,0,0,0,0.727067458955011,0.712994756769443,0.632073515871632,0,0,0.680879211507576,0,0,0.214337035031592,0.177340233642274,0,0.164549020602121,1.2178597964584,0.938686832254841,0.21183207086382,0.441056796109924,0.32977250588296,0.807322133479528,0.603129249281559,0.835606408021955,0.328281799490123,0.582961673259701,2.03967832211561,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,7.30907248973578,5.03825228365169,6.08079884739465,0,0.158167996790568,0.203319467126849,0,0,0,0.539457385539283,0.41326727862668,0.523511883968059,0.388844919875379,1.24267862617385,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0.410843828659309,0.51968329191118,0,0,0.480781798079875,0.590758108698309,0.100966449948148,0.457240839929999,0.403304740547362,0.0974578807397524,0.384847366561318,0.701261413089414,0.226730383615211,0,0.179427713218951,0.335769232728157,0,0.375364950902364,0.183151624267265,0.214368379079066,1.00314420807073,0.564751842617067,4.14292712856459,3.43737308063638,1.71853182343688,4.11049511862385,4.5323633843382,1.35004500046361,4.05289082901798,2.26571204492102,2.07104124700728,0,0,0,0.729320151204882,0.209613162627982,0,0.666740183404846,0,0.962757628775446,1.01078884705519,0.25347929989024,0.188626341386076,0.37456602987953,0.192075457214608,0.17230640686684,0,0.347652977834566,0.578727661391115,0.412085900803307,0.294397840268795,0,0.532427418478012,0,0.290692833264657,0.282328141245992,0.169229215783353,0.365855945745545,0.526139422875686,0,0.561142271657738,0.474540072496697,0.591026894253381,0,0.154936841185966,0.385813221962283,0.249810577937946,0.701794825336225,0.214871054048298,0.191288332068843,0,0 | ||
|short_description=p2@Gfod1 | |short_description=p2@Gfod1 | ||
}} | }} |
Latest revision as of 15:19, 1 October 2015
Short description: | p2@Gfod1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gfod1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1647 |
Association with transcript: | 41bp_to_ENSMUST00000055341, NM_001033399, uc007qfx.1, uc007qfy.1_5end |
EntrezGene: | Gfod1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.27e-12 | 12 |
T cell | 3.12e-11 | 11 |
pro-T cell | 3.12e-11 | 11 |
lymphocyte | 3.14e-11 | 13 |
common lymphoid progenitor | 3.14e-11 | 13 |
hematopoietic cell | 9.30e-10 | 32 |
hematopoietic oligopotent progenitor cell | 9.30e-10 | 32 |
hematopoietic stem cell | 9.30e-10 | 32 |
hematopoietic multipotent progenitor cell | 9.30e-10 | 32 |
mature alpha-beta T cell | 1.45e-08 | 9 |
alpha-beta T cell | 1.45e-08 | 9 |
immature T cell | 1.45e-08 | 9 |
mature T cell | 1.45e-08 | 9 |
immature alpha-beta T cell | 1.45e-08 | 9 |
leukocyte | 5.03e-08 | 17 |
nongranular leukocyte | 5.03e-08 | 17 |
CD4-positive, alpha-beta T cell | 1.06e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 2.33e-12 | 10 |
visual cortex | 2.33e-12 | 10 |
neocortex | 2.33e-12 | 10 |
neural tube | 6.36e-10 | 52 |
neural rod | 6.36e-10 | 52 |
future spinal cord | 6.36e-10 | 52 |
neural keel | 6.36e-10 | 52 |
regional part of nervous system | 2.36e-09 | 54 |
gray matter | 3.15e-09 | 34 |
brain | 1.88e-08 | 47 |
future brain | 1.88e-08 | 47 |
regional part of cerebral cortex | 6.09e-08 | 17 |
brain grey matter | 1.11e-07 | 29 |
regional part of telencephalon | 1.11e-07 | 29 |
telencephalon | 1.11e-07 | 29 |
regional part of brain | 1.20e-07 | 46 |
regional part of forebrain | 2.31e-07 | 39 |
forebrain | 2.31e-07 | 39 |
future forebrain | 2.31e-07 | 39 |
cerebral cortex | 3.08e-07 | 21 |
cerebral hemisphere | 3.08e-07 | 21 |
pallium | 3.08e-07 | 21 |
anterior neural tube | 4.45e-07 | 40 |
neurectoderm | 5.42e-07 | 64 |
neural plate | 5.42e-07 | 64 |
presumptive neural plate | 5.42e-07 | 64 |
central nervous system | 5.46e-07 | 73 |