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FFCP PHASE1:Mm9::chr13:43399668..43399678,-: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=328232
|EntrezGene=328232
|HGNC=
|HGNC=
|MCL_coexpression_id=1647
|TSSclassifier=NA
|UniProt=Q3UHD2
|UniProt=Q3UHD2
|association_with_transcript=-127bp_to_ENSMUST00000055341,NM_001033399,uc007qfx.1,uc007qfy.1_5end
|association_with_transcript=-127bp_to_ENSMUST00000055341,NM_001033399,uc007qfx.1,uc007qfy.1_5end
|cluster_id=chr13:43399668..43399678,-
|description=CAGE_peak_4_at_Gfod1_5end
|description=CAGE_peak_4_at_Gfod1_5end
|id=chr13:43399668..43399678,-
|id=chr13:43399668..43399678,-
|ontology_enrichment_celltype=CL:0000117!1.37e-09!23;CL:0000337!1.37e-09!23;CL:0000540!3.76e-08!33;CL:0000047!3.76e-08!33;CL:0000031!3.76e-08!33;CL:0000404!3.76e-08!33
|ontology_enrichment_celltype=CL:0000117!1.37e-09!23;CL:0000337!1.37e-09!23;CL:0000540!3.76e-08!33;CL:0000047!3.76e-08!33;CL:0000031!3.76e-08!33;CL:0000404!3.76e-08!33
|ontology_enrichment_celltype_v019_2=CL:0000893,8.17e-11,6;CL:0002489,8.17e-11,6;CL:0000898,8.17e-11,6;CL:0000809,8.17e-11,6;CL:0000810,8.17e-11,6;CL:0000895,8.17e-11,6;CL:0000808,8.17e-11,6;CL:0000894,8.17e-11,6;CL:0000806,8.17e-11,6;CL:0000807,8.17e-11,6;CL:0000805,8.17e-11,6;CL:0002425,8.17e-11,6;CL:0002436,8.17e-11,6;CL:0002427,8.17e-11,6;CL:0002428,8.17e-11,6;CL:0002429,8.17e-11,6;CL:0002433,8.17e-11,6;CL:0002431,8.17e-11,6;CL:0002432,8.17e-11,6;CL:0000117,4.43e-09,23;CL:0000337,4.43e-09,23;CL:0000624,3.99e-08,8;CL:0002611,5.81e-08,2;CL:0000791,3.16e-07,9;CL:0000789,3.16e-07,9;CL:0002420,3.16e-07,9;CL:0002419,3.16e-07,9;CL:0000790,3.16e-07,9
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001049!2.09e-13!52;UBERON:0005068!2.09e-13!52;UBERON:0006241!2.09e-13!52;UBERON:0007135!2.09e-13!52;UBERON:0000073!3.81e-13!75;UBERON:0001016!3.81e-13!75;UBERON:0001017!4.07e-13!73;UBERON:0005743!4.07e-13!73;UBERON:0002020!9.05e-13!34;UBERON:0002346!2.88e-11!71;UBERON:0003075!2.88e-11!71;UBERON:0007284!2.88e-11!71;UBERON:0000955!5.47e-11!50;UBERON:0006238!5.47e-11!50;UBERON:0002616!1.06e-10!49;UBERON:0004121!1.59e-10!102;UBERON:0000924!1.59e-10!102;UBERON:0006601!1.59e-10!102;UBERON:0002791!9.54e-10!29;UBERON:0003528!9.54e-10!29;UBERON:0001893!9.54e-10!29;UBERON:0000033!1.52e-09!63;UBERON:0003080!9.64e-09!40;UBERON:0002780!1.05e-08!39;UBERON:0001890!1.05e-08!39;UBERON:0006240!1.05e-08!39;UBERON:0007811!1.50e-08!86;UBERON:0003056!1.45e-07!49;UBERON:0000956!4.47e-07!21;UBERON:0001869!4.47e-07!21;UBERON:0000203!4.47e-07!21;UBERON:0000153!6.68e-07!94;UBERON:0000025!7.79e-07!114
|ontology_enrichment_uberon=UBERON:0001049!2.09e-13!52;UBERON:0005068!2.09e-13!52;UBERON:0006241!2.09e-13!52;UBERON:0007135!2.09e-13!52;UBERON:0000073!3.81e-13!75;UBERON:0001016!3.81e-13!75;UBERON:0001017!4.07e-13!73;UBERON:0005743!4.07e-13!73;UBERON:0002020!9.05e-13!34;UBERON:0002346!2.88e-11!71;UBERON:0003075!2.88e-11!71;UBERON:0007284!2.88e-11!71;UBERON:0000955!5.47e-11!50;UBERON:0006238!5.47e-11!50;UBERON:0002616!1.06e-10!49;UBERON:0004121!1.59e-10!102;UBERON:0000924!1.59e-10!102;UBERON:0006601!1.59e-10!102;UBERON:0002791!9.54e-10!29;UBERON:0003528!9.54e-10!29;UBERON:0001893!9.54e-10!29;UBERON:0000033!1.52e-09!63;UBERON:0003080!9.64e-09!40;UBERON:0002780!1.05e-08!39;UBERON:0001890!1.05e-08!39;UBERON:0006240!1.05e-08!39;UBERON:0007811!1.50e-08!86;UBERON:0003056!1.45e-07!49;UBERON:0000956!4.47e-07!21;UBERON:0001869!4.47e-07!21;UBERON:0000203!4.47e-07!21;UBERON:0000153!6.68e-07!94;UBERON:0000025!7.79e-07!114
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.94e-11,54;UBERON:0001017,3.88e-10,73;UBERON:0001049,7.76e-10,52;UBERON:0005068,7.76e-10,52;UBERON:0006241,7.76e-10,52;UBERON:0007135,7.76e-10,52;UBERON:0001016,8.69e-10,75;UBERON:0002020,2.43e-09,34;UBERON:0002616,4.41e-08,46;UBERON:0000956,4.59e-08,21;UBERON:0001869,4.59e-08,21;UBERON:0000203,4.59e-08,21;UBERON:0002256,5.81e-08,2;UBERON:0000955,7.19e-08,47;UBERON:0006238,7.19e-08,47;UBERON:0002346,1.50e-07,64;UBERON:0003075,1.50e-07,64;UBERON:0007284,1.50e-07,64;UBERON:0003528,2.93e-07,29;UBERON:0002791,2.93e-07,29;UBERON:0001893,2.93e-07,29;UBERON:0004121,4.23e-07,95;UBERON:0000924,4.23e-07,95;UBERON:0006601,4.23e-07,95
|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0.387369970324729,3.37892933164,7.95819389494778,1.36974374580404,1.7549874978974,0,0.262261207256992,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0.42438965179803,0.17008658030214,0.496454756004426,0.522399578277871,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0.837063261473815,0,0,1.76469446409304,0,0.971020706062307,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0.286533439938757,0,0.202316460859598,1.05798195854407,3.1691570175309,0,0,0,0,0,0,0,0.725827286159344,1.21505344498522,1.89292465216244,1.14260393761521,1.10434270475807,0.367472397644862,0.191690942036473,0,0,1.0214987046815,0.768032666281217,0.659431438650969,0.457438218012048,0,1.3959149950069,0.56276261003168,0.61119299110724,0.589257170947335,0.996601765593721,0.745597783301202,0.075726193333184,0.0755715601067855,0.869593466105033,0.860423876981386,1.3599426674155,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0.445326417194474,0,0.608930956624282,0,0.150722640552623,0,0,0.247194967734374,0,0.884610551949874,0.161766849947409,0.220841518460394,0.484875253135222,0,2.63502717310392,1.8850203613211,0.510914110417183,1.07833612055328,0.599902730993408,0.762421362438388,0.149790639404823,0.457500602818626,0.502617408451458,1.56441888173049,0.255715457330331,1.0389402227978,0.811206315338788,0.203678727700633,0.124406970610093,0,0,0.260240885925407,0.229902104433473,0,0,0,0.2562274405697,0,0.517406741478031,0,0,0,0,0,0,0.411564272815887,0.199034266818493,0.702213187313235,1.54408744268829,0.568326998791185,0,0.234526059981096,0.36012412292203,0,0.393528463494808,0.154267112887378,0.232533944750408,0.268273401399619,0.233530684734339,0.493679549740441,0,0.324275238183423,0,0,0.402619256281115,0.420579897128254,0.308713837137853,0,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0.179397413521912,0,0.369506380333209,0,0.162964976442026,0,0,0.167506257441816,0,0,0.157635144106191,0.221464689648775,0.797273843287435,0,0,0.433947175744535,0,0,0,0,0.963303539926752,0.937693492737625,0,0.504941854408746,0.315508219416257,0,0.430846795465598,0.477937595905104,0,0,0,0.584511715822624,0,0.321321316421807,0.141940085208269,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0.428674070063185,0,0.356737635204141,0.164549020602121,0,0,0.21183207086382,0,0,0,0.120625849856312,0.238744688006273,0.164140899745061,0,0.556275906031529,0,0,0,0,0,0,0.509935289981566,0.279902904647316,0.690999869022119,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0.202725215290164,0.102710957164827,0.25984164595559,0,0.198681354781265,0,0.147689527174577,0,0.15241361331,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,1.6942555278512,0,0.572895513439397,1.71853182343688,1.37016503954128,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,1.55328093525546,0,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0,0,0,0,0.252697211763798,0,0.188626341386076,0.280924522409647,0.192075457214608,0.114870937911227,0,0.115884325944855,0,0,0,0.685738504770831,0.177475806159338,0.238436189947321,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0.29551344712669,0,0.77468420592983,0.385813221962283,0,0,0,0,0,0
|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0.387369970324729,3.37892933164,7.95819389494778,1.36974374580404,1.7549874978974,0,0.262261207256992,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0.42438965179803,0.17008658030214,0.496454756004426,0.522399578277871,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0.837063261473815,0,0,1.76469446409304,0,0.971020706062307,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0.286533439938757,0,0.202316460859598,1.05798195854407,3.1691570175309,0,0,0,0,0,0,0,0.725827286159344,1.21505344498522,1.89292465216244,1.14260393761521,1.10434270475807,0.367472397644862,0.191690942036473,0,0,1.0214987046815,0.768032666281217,0.659431438650969,0.457438218012048,0,1.3959149950069,0.56276261003168,0.61119299110724,0.589257170947335,0.996601765593721,0.745597783301202,0.075726193333184,0.0755715601067855,0.869593466105033,0.860423876981386,1.3599426674155,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0,0,0.445326417194474,0,0.608930956624282,0,0.150722640552623,0,0,0.247194967734374,0,0.884610551949874,0.161766849947409,0.220841518460394,0.484875253135222,0,2.63502717310392,1.8850203613211,0.510914110417183,1.07833612055328,0.599902730993408,0.762421362438388,0.149790639404823,0.457500602818626,0.502617408451458,1.56441888173049,0.255715457330331,1.0389402227978,0.811206315338788,0.203678727700633,0.124406970610093,0,0,0.260240885925407,0.229902104433473,0,0,0,0.2562274405697,0,0.517406741478031,0,0,0,0,0,0,0.411564272815887,0.199034266818493,0.702213187313235,1.54408744268829,0.568326998791185,0,0.234526059981096,0.36012412292203,0,0.393528463494808,0.154267112887378,0.232533944750408,0.268273401399619,0.233530684734339,0.493679549740441,0,0.324275238183423,0,0,0.402619256281115,0.420579897128254,0.308713837137853,0,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0.0701358198903186,0,0,0.156998727841375,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0.179397413521912,0,0.369506380333209,0,0.162964976442026,0,0,0.167506257441816,0,0,0.157635144106191,0.221464689648775,0.797273843287435,0,0,0.433947175744535,0,0,0,0,0.963303539926752,0.937693492737625,0,0.504941854408746,0.315508219416257,0,0.430846795465598,0.477937595905104,0,0,0,0.584511715822624,0,0.321321316421807,0.141940085208269,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0.428674070063185,0,0.356737635204141,0.164549020602121,0,0,0.21183207086382,0,0,0,0.120625849856312,0.238744688006273,0.164140899745061,0,0.556275906031529,0,0,0,0,0,0,0.509935289981566,0.279902904647316,0.690999869022119,0,0.158167996790568,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0.202725215290164,0.102710957164827,0.25984164595559,0,0.198681354781265,0,0.147689527174577,0,0.15241361331,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,1.6942555278512,0,0.572895513439397,1.71853182343688,1.37016503954128,0.755393897389701,0.675022500231806,0.45032120322422,0.453142408984205,1.55328093525546,0,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0,0,0,0,0.252697211763798,0,0.188626341386076,0.280924522409647,0.192075457214608,0.114870937911227,0,0.115884325944855,0,0,0,0.685738504770831,0.177475806159338,0.238436189947321,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0.29551344712669,0,0.77468420592983,0.385813221962283,0,0,0,0,0,0
|short_description=p4@Gfod1
|short_description=p4@Gfod1
}}
}}

Latest revision as of 15:20, 1 October 2015

Short description:p4@Gfod1
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Gfod1_5end
Coexpression cluster:MCL_coexpression_mm9:1647
Association with transcript: -127bp_to_ENSMUST00000055341, NM_001033399, uc007qfx.1, uc007qfy.1_5end
EntrezGene:Gfod1
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p4@Gfod1

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.32
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.17
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.39
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E73.38
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F27.96
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E61.37
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F11.75
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.26
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.20
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.16
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.14
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.42
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.17
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.50
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.52
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.19
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.84
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G91.76
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.97
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.00
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.00
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.17
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C30.20
Mouse Granule cells, donor2.CNhs12357.11731-123E31.06
Mouse Granule cells, donor3.CNhs12108.11636-122C73.17
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.73
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F51.22
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.89
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F11.14
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D51.10
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.37
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.19
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F31.02
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D70.77
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.66
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.46
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E41.40
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E50.56
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.61
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.59
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F61.00
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.75
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.87
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.86
Mouse hepatocyte, donor1.CNhs13078.11714-123C41.36
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.14
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.42
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.00
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.45
adrenal gland, embryo E14.CNhs11038.406-44C50.00
adrenal gland, embryo E16.CNhs11004.1254-43D60.61
adrenal gland, embryo E17.CNhs11043.1263-45I10.00
adrenal gland, embryo E18.CNhs11026.1262-18F50.15
adrenal gland, neonate N00.CNhs11191.1311-23C10.00
adrenal gland, neonate N25.CNhs11223.1377-27I30.00
amnion, adult pregnant day17.5.CNhs10488.583-22A80.25
aorta, adult.CNhs10498.46-23H10.00
bone (os femoris), adult.CNhs10483.56-12G20.88
bone (os femoris), neonate N02.CNhs11227.1985-43F50.16
bone (os femoris), neonate N16.CNhs11225.1525-43A60.22
bone (os femoris), neonate N20.CNhs11195.1350-25C30.48
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B22.64
cerebellum, neonate N30.CNhs11135.1395-42I21.89
colon, adult.CNhs10468.36-18H70.51
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C71.08
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.60
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.76
corpora quadrigemina, adult.CNhs10501.16-22A40.15
corpus striatum, adult.CNhs10487.19-21D80.46
corpus striatum, neonate N00.CNhs11226.630-43F10.50
cortex, adult.CNhs10473.12-14D51.56
cortex, neonate N30.CNhs11107.1392-42F20.26
diencephalon, adult.CNhs10482.20-12F21.04
diencephalon, neonate N30.CNhs11201.1388-42B20.81
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.20
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.12
epididymis, adult.CNhs10490.58-23B20.00
eyeball, adult.CNhs10484.31-12G40.00
eyeball, embryo E12.CNhs11016.345-16C60.26
eyeball, embryo E14.CNhs10521.399-16E20.23
eyeball, embryo E15.CNhs10593.426-16C90.00
eyeball, embryo E17.CNhs11023.1261-18D40.00
eyeball, neonate N00.CNhs11207.633-15C60.00
eyeball, neonate N01.CNhs11140.1532-43E70.26
eyeball, neonate N02.CNhs11205.1551-44G80.00
eyeball, neonate N16.CNhs11188.777-19A20.52
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.00
forelimb, embryo E13.CNhs10589.384-1E20.00
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.41
gonad, embryo E13.CNhs11044.1564-45I60.20
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.70
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D21.54
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.57
heart, embryo E11.CNhs10586.331-24E90.00
heart, embryo E12.CNhs11015.353-12F50.23
heart, embryo E13.CNhs11013.376-3I90.36
heart, embryo E14.CNhs10597.403-26D40.00
heart, embryo E15.CNhs11017.431-16C80.39
heart, embryo E16.CNhs11021.457-17C60.15
heart, embryo E17.CNhs11025.479-18E50.23
heart, embryo E18.CNhs11030.1283-20G30.27
heart, neonate N00.CNhs11213.639-21E30.23
heart, neonate N03.CNhs11221.1349-25I20.49
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.32
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.40
hippocampus, adult.CNhs10478.13-16E80.42
hippocampus, neonate N00.CNhs11228.627-43G10.31
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.26
intestine, embryo E12.CNhs11019.1251-16I50.00
intestine, embryo E13.CNhs11010.381-16D50.00
intestine, embryo E15.CNhs10602.976-16D80.00
intestine, embryo E16.CNhs10585.463-22H40.00
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.19
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.00
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.00
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.19
kidney, embryo E15.CNhs10997.434-16F80.00
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.00
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.07
kidney, neonate N10.CNhs11206.758-6D50.00
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.16
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.24
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.18
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.37
lung, embryo E12.CNhs10522.354-16G20.00
lung, embryo E14.CNhs10604.404-26F80.16
lung, embryo E15.CNhs11020.432-17C50.00
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.17
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.16
lung, neonate N07.CNhs11111.715-19A30.22
lung, neonate N10.CNhs11219.750-23E60.80
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.43
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C20.96
medulla oblongata, neonate N30.CNhs11200.1396-42A30.94
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.50
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.32
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.43
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.48
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.58
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.00
olfactory brain, adult.CNhs10489.18-22I90.32
ovary, adult.CNhs10507.91-2I70.14
ovary, embryo E18.CNhs11040.505-44H70.00
ovary, neonate N00.CNhs11217.1299-22I40.00
oviduct, adult pregnant day01.CNhs10500.988-6G60.00
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.30
pancreas, embryo E16.CNhs11003.460-26E50.00
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.00
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.00
pituitary gland, embryo E12.CNhs11018.346-16E60.00
pituitary gland, embryo E13.CNhs11009.370-44C70.00
pituitary gland, embryo E14.CNhs11037.398-44A50.43
pituitary gland, embryo E15.CNhs10592.427-16B90.00
pituitary gland, embryo E16.CNhs11036.449-43F60.36
pituitary gland, embryo E17.CNhs11039.1265-44F50.16
pituitary gland, neonate N00.CNhs11190.1308-22E90.00
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F80.00
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.12
skin, neonate N06.CNhs11097.693-20I50.24
skin, neonate N10.CNhs11108.762-6C40.16
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C90.56
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.00
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.51
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.28
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.69
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.16
stomach, embryo E15.CNhs10603.1252-16G80.00
stomach, embryo E16.CNhs11022.459-17D40.11
stomach, embryo E17.CNhs11006.1035-18D50.00
stomach, embryo E18.CNhs10999.1286-20C60.00
stomach, neonate N03.CNhs11193.1340-24B80.00
stomach, neonate N07.CNhs11210.718-18A90.00
stomach, neonate N25.CNhs11104.1355-25E40.00
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.00
testis, embryo E17.CNhs11029.486-18I50.00
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.00
testis, neonate N07.CNhs11222.726-26I40.13
testis, neonate N10.CNhs11204.763-44D90.00
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.20
thymus, embryo E15.CNhs11005.430-45I20.10
thymus, embryo E16.CNhs11002.456-26C50.26
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.15
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.15
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.00
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.00
vagina, adult.CNhs10502.89-27D50.00
vesicular gland, adult.CNhs10491.51-27F80.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A11.69
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.00
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.57
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D71.72
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A41.37
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.76
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.68
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.45
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.45
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A91.55
whole body, embryo E11.CNhs11014.324-5I80.00
whole body, embryo E12.CNhs10587.857-27C90.40
whole body, embryo E13.CNhs10512.372-23H20.34
whole body, embryo E14.5.CNhs10578.420-27D20.49
whole body, embryo E14.CNhs10519.395-14B10.42
whole body, embryo E16.CNhs10514.453-14F20.00
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.28
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.11
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.12
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G50.69
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.18
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.24
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.15
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.08
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.30
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.77
whole body, embryo E17.5.CNhs10513.490-9F90.39
whole body, embryo E17.CNhs10517.475-3I50.00
whole body, embryo E18.CNhs10516.493-3B30.00
whole body, neonate N00.CNhs10525.657-19C20.00
whole body, neonate N01.CNhs10576.659-23C60.00
whole body, neonate N06.CNhs10515.692-21D10.00
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
thymocyte8.17e-116
double negative thymocyte8.17e-116
naive T cell8.17e-116
double-positive, alpha-beta thymocyte8.17e-116
CD4-positive, alpha-beta thymocyte8.17e-116
naive thymus-derived CD4-positive, alpha-beta T cell8.17e-116
DN4 thymocyte8.17e-116
DN1 thymic pro-T cell8.17e-116
DN2 thymocyte8.17e-116
DN3 thymocyte8.17e-116
immature single positive thymocyte8.17e-116
early T lineage precursor8.17e-116
mature CD4 single-positive thymocyte8.17e-116
resting double-positive thymocyte8.17e-116
double-positive blast8.17e-116
CD69-positive double-positive thymocyte8.17e-116
CD69-positive, CD4-positive single-positive thymocyte8.17e-116
CD4-positive, CD8-intermediate double-positive thymocyte8.17e-116
CD24-positive, CD4 single-positive thymocyte8.17e-116
CNS neuron (sensu Vertebrata)4.43e-0923
neuroblast (sensu Vertebrata)4.43e-0923
CD4-positive, alpha-beta T cell3.99e-088
neuron of the dorsal spinal cord5.81e-082
mature alpha-beta T cell3.16e-079
alpha-beta T cell3.16e-079
immature T cell3.16e-079
mature T cell3.16e-079
immature alpha-beta T cell3.16e-079

Uber anatomy
Ontology termp-valuen
regional part of nervous system5.94e-1154
central nervous system3.88e-1073
neural tube7.76e-1052
neural rod7.76e-1052
future spinal cord7.76e-1052
neural keel7.76e-1052
nervous system8.69e-1075
gray matter2.43e-0934
regional part of brain4.41e-0846
cerebral cortex4.59e-0821
cerebral hemisphere4.59e-0821
pallium4.59e-0821
dorsal horn of spinal cord5.81e-082
brain7.19e-0847
future brain7.19e-0847
neurectoderm1.50e-0764
neural plate1.50e-0764
presumptive neural plate1.50e-0764
brain grey matter2.93e-0729
regional part of telencephalon2.93e-0729
telencephalon2.93e-0729
ectoderm-derived structure4.23e-0795
ectoderm4.23e-0795
presumptive ectoderm4.23e-0795
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