FF:11783-124B1: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=FF:11783-124B1 | |id=FF:11783-124B1 | ||
|is_a=EFO:0002091 | |is_a=EFO:0002091;;FF:0000153 | ||
|is_obsolete= | |||
|name=Renal Glomerular Endothelial Cells, donor4 | |name=Renal Glomerular Endothelial Cells, donor4 | ||
|namespace= | |namespace= | ||
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|sample_tissue= | |sample_tissue= | ||
|top_motifs=RXR{A,B,G}:2.33875168456;SOX{8,9,10}:2.16812196966;TFAP2{A,C}:1.95353578548;PBX1:1.82229890546;ZIC1..3:1.79664624741;GTF2A1,2:1.76765694889;ZNF423:1.74077631701;TFAP4:1.5621963854;bHLH_family:1.50836932888;HES1:1.47390153043;TLX1..3_NFIC{dimer}:1.4504227543;SPZ1:1.36421786728;IKZF1:1.33068496137;HAND1,2:1.28306464831;HIC1:1.21105494858;XCPE1{core}:1.12082517634;ESRRA:1.06680193928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05867181713;ZNF148:1.00176120246;SP1:0.991019343009;EBF1:0.963916450297;TP53:0.908124527675;LHX3,4:0.898984665132;RXRA_VDR{dimer}:0.878339728527;NANOG:0.872216994512;NR6A1:0.859415545879;TFAP2B:0.80980072063;POU2F1..3:0.772340063469;REST:0.768403547635;FOXL1:0.709384351067;TBP:0.707507723343;PAX1,9:0.68185171704;ZBTB6:0.681175289651;PATZ1:0.661235139164;GZF1:0.660986500965;NR5A1,2:0.655726356368;GATA6:0.649105967173;GLI1..3:0.639438064649;ARID5B:0.618500355375;SRF:0.607865430745;AR:0.59598988651;ETS1,2:0.587080674615;PAX5:0.585139574759;SOX5:0.503991423483;MTE{core}:0.499257006417;ZNF238:0.475334419299;LEF1_TCF7_TCF7L1,2:0.46846763621;TEAD1:0.451161180013;SMAD1..7,9:0.446132427683;ESR1:0.44060178124;MYOD1:0.413150952421;STAT2,4,6:0.389540482561;MED-1{core}:0.357830125867;GFI1B:0.352460583874;POU6F1:0.351465794976;SOX2:0.350282953205;HNF4A_NR2F1,2:0.331473260828;ATF6:0.328777185542;RREB1:0.28835205606;NFATC1..3:0.288281453923;HMX1:0.268243504321;FOX{D1,D2}:0.254823082151;MTF1:0.244780150546;UFEwm:0.225872542795;LMO2:0.20873969152;SPIB:0.178151868209;GTF2I:0.160522185004;EP300:0.138716468409;PPARG:0.12872185366;HOX{A5,B5}:0.127420760206;NFE2:0.116927284272;NFKB1_REL_RELA:0.114738867026;NKX2-3_NKX2-5:0.110336914314;PAX6:0.0306542706154;SOX17:0.0159775849122;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0106814613216;HNF1A:0.0102904187782;HBP1_HMGB_SSRP1_UBTF:0.00795016349191;MAFB:-0.0129319866906;NR1H4:-0.0235749739019;FOXM1:-0.0432043405405;FOSL2:-0.0597415116946;BACH2:-0.112489846616;ATF2:-0.12420276278;ELF1,2,4:-0.124802940958;MAZ:-0.131347835295;ADNP_IRX_SIX_ZHX:-0.133896137007;GFI1:-0.145521324364;EGR1..3:-0.14607915307;TOPORS:-0.151620944039;NFY{A,B,C}:-0.162927799025;NR3C1:-0.164171725876;MEF2{A,B,C,D}:-0.195803647085;TFCP2:-0.216455064704;FOS_FOS{B,L1}_JUN{B,D}:-0.220731974639;SNAI1..3:-0.23124640684;NFE2L1:-0.233663216772;POU3F1..4:-0.234072935199;IKZF2:-0.252088419532;CREB1:-0.267423868581;SPI1:-0.275989670994;MZF1:-0.280455076586;XBP1:-0.308583873754;STAT5{A,B}:-0.309852822521;ONECUT1,2:-0.321369917054;HOX{A6,A7,B6,B7}:-0.324802832765;ZFP161:-0.344730282729;T:-0.35514189723;ZEB1:-0.356717662235;JUN:-0.368903789314;TAL1_TCF{3,4,12}:-0.380549639191;IRF1,2:-0.387854300627;ZNF143:-0.390741525797;HOXA9_MEIS1:-0.39170973877;FOXQ1:-0.42985697702;YY1:-0.443706631892;NFE2L2:-0.457141512199;ALX4:-0.460105635907;CUX2:-0.462018391047;PITX1..3:-0.476092270354;GCM1,2:-0.507665130179;NANOG{mouse}:-0.516718112756;E2F1..5:-0.517606670733;SREBF1,2:-0.51865222547;MYB:-0.518975034014;FOXA2:-0.544501375656;RORA:-0.54822139126;NHLH1,2:-0.588872049681;RUNX1..3:-0.597821137242;HIF1A:-0.604808317565;PAX8:-0.636894264073;TFDP1:-0.644060243005;NKX3-1:-0.670742668978;RBPJ:-0.674847309159;ATF4:-0.684626019329;MYFfamily:-0.708900423454;HLF:-0.727916149479;NKX3-2:-0.785933225467;TEF:-0.798221497313;RFX1:-0.821912224189;CDC5L:-0.835690761868;NKX2-2,8:-0.849620758672;CEBPA,B_DDIT3:-0.849804545004;FOX{I1,J2}:-0.865458661241;PAX3,7:-0.907674212825;STAT1,3:-0.914168473802;HSF1,2:-0.951799431463;POU5F1:-0.95317336197;IRF7:-0.959082237974;KLF4:-0.964928175116;GATA4:-0.988348650789;PRDM1:-1.01696143845;FOX{F1,F2,J1}:-1.04229080314;BPTF:-1.08004368898;PRRX1,2:-1.09089234492;FOXD3:-1.09325731297;PAX2:-1.10412906175;DMAP1_NCOR{1,2}_SMARC:-1.12190623319;EVI1:-1.12449310177;AHR_ARNT_ARNT2:-1.1262066224;NRF1:-1.14904837619;ATF5_CREB3:-1.15053032681;CRX:-1.15461731706;TBX4,5:-1.15467286156;EN1,2:-1.16935941104;BREu{core}:-1.17597956898;NFIX:-1.28211162171;DBP:-1.28220088051;ZNF384:-1.28411913435;MYBL2:-1.33299064565;PAX4:-1.34903722119;POU1F1:-1.35980799744;AIRE:-1.39121428822;TLX2:-1.40695994069;RFX2..5_RFXANK_RFXAP:-1.43652766938;OCT4_SOX2{dimer}:-1.44651922734;HMGA1,2:-1.4548792959;ELK1,4_GABP{A,B1}:-1.46382784614;PDX1:-1.47527019626;FOXN1:-1.47647368879;TGIF1:-1.49182902342;NFIL3:-1.511702569;NKX2-1,4:-1.56408220445;ALX1:-1.68115139888;FOXO1,3,4:-1.74841253642;VSX1,2:-1.78747662774;FOXP1:-1.82682713286;FOXP3:-1.8542592104;ZBTB16:-1.97778066608;HOX{A4,D4}:-2.23555797007;NKX6-1,2:-2.50279333952;CDX1,2,4:-2.7743088936 | |top_motifs=RXR{A,B,G}:2.33875168456;SOX{8,9,10}:2.16812196966;TFAP2{A,C}:1.95353578548;PBX1:1.82229890546;ZIC1..3:1.79664624741;GTF2A1,2:1.76765694889;ZNF423:1.74077631701;TFAP4:1.5621963854;bHLH_family:1.50836932888;HES1:1.47390153043;TLX1..3_NFIC{dimer}:1.4504227543;SPZ1:1.36421786728;IKZF1:1.33068496137;HAND1,2:1.28306464831;HIC1:1.21105494858;XCPE1{core}:1.12082517634;ESRRA:1.06680193928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05867181713;ZNF148:1.00176120246;SP1:0.991019343009;EBF1:0.963916450297;TP53:0.908124527675;LHX3,4:0.898984665132;RXRA_VDR{dimer}:0.878339728527;NANOG:0.872216994512;NR6A1:0.859415545879;TFAP2B:0.80980072063;POU2F1..3:0.772340063469;REST:0.768403547635;FOXL1:0.709384351067;TBP:0.707507723343;PAX1,9:0.68185171704;ZBTB6:0.681175289651;PATZ1:0.661235139164;GZF1:0.660986500965;NR5A1,2:0.655726356368;GATA6:0.649105967173;GLI1..3:0.639438064649;ARID5B:0.618500355375;SRF:0.607865430745;AR:0.59598988651;ETS1,2:0.587080674615;PAX5:0.585139574759;SOX5:0.503991423483;MTE{core}:0.499257006417;ZNF238:0.475334419299;LEF1_TCF7_TCF7L1,2:0.46846763621;TEAD1:0.451161180013;SMAD1..7,9:0.446132427683;ESR1:0.44060178124;MYOD1:0.413150952421;STAT2,4,6:0.389540482561;MED-1{core}:0.357830125867;GFI1B:0.352460583874;POU6F1:0.351465794976;SOX2:0.350282953205;HNF4A_NR2F1,2:0.331473260828;ATF6:0.328777185542;RREB1:0.28835205606;NFATC1..3:0.288281453923;HMX1:0.268243504321;FOX{D1,D2}:0.254823082151;MTF1:0.244780150546;UFEwm:0.225872542795;LMO2:0.20873969152;SPIB:0.178151868209;GTF2I:0.160522185004;EP300:0.138716468409;PPARG:0.12872185366;HOX{A5,B5}:0.127420760206;NFE2:0.116927284272;NFKB1_REL_RELA:0.114738867026;NKX2-3_NKX2-5:0.110336914314;PAX6:0.0306542706154;SOX17:0.0159775849122;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0106814613216;HNF1A:0.0102904187782;HBP1_HMGB_SSRP1_UBTF:0.00795016349191;MAFB:-0.0129319866906;NR1H4:-0.0235749739019;FOXM1:-0.0432043405405;FOSL2:-0.0597415116946;BACH2:-0.112489846616;ATF2:-0.12420276278;ELF1,2,4:-0.124802940958;MAZ:-0.131347835295;ADNP_IRX_SIX_ZHX:-0.133896137007;GFI1:-0.145521324364;EGR1..3:-0.14607915307;TOPORS:-0.151620944039;NFY{A,B,C}:-0.162927799025;NR3C1:-0.164171725876;MEF2{A,B,C,D}:-0.195803647085;TFCP2:-0.216455064704;FOS_FOS{B,L1}_JUN{B,D}:-0.220731974639;SNAI1..3:-0.23124640684;NFE2L1:-0.233663216772;POU3F1..4:-0.234072935199;IKZF2:-0.252088419532;CREB1:-0.267423868581;SPI1:-0.275989670994;MZF1:-0.280455076586;XBP1:-0.308583873754;STAT5{A,B}:-0.309852822521;ONECUT1,2:-0.321369917054;HOX{A6,A7,B6,B7}:-0.324802832765;ZFP161:-0.344730282729;T:-0.35514189723;ZEB1:-0.356717662235;JUN:-0.368903789314;TAL1_TCF{3,4,12}:-0.380549639191;IRF1,2:-0.387854300627;ZNF143:-0.390741525797;HOXA9_MEIS1:-0.39170973877;FOXQ1:-0.42985697702;YY1:-0.443706631892;NFE2L2:-0.457141512199;ALX4:-0.460105635907;CUX2:-0.462018391047;PITX1..3:-0.476092270354;GCM1,2:-0.507665130179;NANOG{mouse}:-0.516718112756;E2F1..5:-0.517606670733;SREBF1,2:-0.51865222547;MYB:-0.518975034014;FOXA2:-0.544501375656;RORA:-0.54822139126;NHLH1,2:-0.588872049681;RUNX1..3:-0.597821137242;HIF1A:-0.604808317565;PAX8:-0.636894264073;TFDP1:-0.644060243005;NKX3-1:-0.670742668978;RBPJ:-0.674847309159;ATF4:-0.684626019329;MYFfamily:-0.708900423454;HLF:-0.727916149479;NKX3-2:-0.785933225467;TEF:-0.798221497313;RFX1:-0.821912224189;CDC5L:-0.835690761868;NKX2-2,8:-0.849620758672;CEBPA,B_DDIT3:-0.849804545004;FOX{I1,J2}:-0.865458661241;PAX3,7:-0.907674212825;STAT1,3:-0.914168473802;HSF1,2:-0.951799431463;POU5F1:-0.95317336197;IRF7:-0.959082237974;KLF4:-0.964928175116;GATA4:-0.988348650789;PRDM1:-1.01696143845;FOX{F1,F2,J1}:-1.04229080314;BPTF:-1.08004368898;PRRX1,2:-1.09089234492;FOXD3:-1.09325731297;PAX2:-1.10412906175;DMAP1_NCOR{1,2}_SMARC:-1.12190623319;EVI1:-1.12449310177;AHR_ARNT_ARNT2:-1.1262066224;NRF1:-1.14904837619;ATF5_CREB3:-1.15053032681;CRX:-1.15461731706;TBX4,5:-1.15467286156;EN1,2:-1.16935941104;BREu{core}:-1.17597956898;NFIX:-1.28211162171;DBP:-1.28220088051;ZNF384:-1.28411913435;MYBL2:-1.33299064565;PAX4:-1.34903722119;POU1F1:-1.35980799744;AIRE:-1.39121428822;TLX2:-1.40695994069;RFX2..5_RFXANK_RFXAP:-1.43652766938;OCT4_SOX2{dimer}:-1.44651922734;HMGA1,2:-1.4548792959;ELK1,4_GABP{A,B1}:-1.46382784614;PDX1:-1.47527019626;FOXN1:-1.47647368879;TGIF1:-1.49182902342;NFIL3:-1.511702569;NKX2-1,4:-1.56408220445;ALX1:-1.68115139888;FOXO1,3,4:-1.74841253642;VSX1,2:-1.78747662774;FOXP1:-1.82682713286;FOXP3:-1.8542592104;ZBTB16:-1.97778066608;HOX{A4,D4}:-2.23555797007;NKX6-1,2:-2.50279333952;CDX1,2,4:-2.7743088936 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Revision as of 22:50, 27 June 2012
| Name: | Renal Glomerular Endothelial Cells, donor4 |
|---|---|
| Species: | |
| Library ID: | {{{library_id}}} |
| Sample type: | {{{sample_category}}} |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000115 (endothelial cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000666 (fenestrated cell)
1000497 (kidney cell)
0000222 (mesodermal cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
1000449 (epithelial cell of nephron)
0002188 (glomerular endothelial cell)
1000746 (glomerular cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000926 (mesoderm)
0000080 (mesonephros)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000025 (tube)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0003914 (epithelial tube)
0005103 (mesonephric epithelium)
0000083 (mesonephric tubule)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005291 (embryonic tissue)
0004211 (nephron epithelium)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003104 (mesenchyme)
0005172 (abdomen element)
0000464 (anatomical space)
0009201 (nephric duct)
0005256 (trunk mesenchyme)
0003918 (kidney mesenchyme)
0006598 (presumptive structure)
0003886 (body cavity precursor)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0002532 (epiblast (generic))
0006553 (renal duct)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001285 (nephron)
0001229 (renal corpuscle)
0001008 (renal system)
0003074 (mesonephric duct)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0003887 (intraembryonic coelom)
0002120 (pronephros)
0009142 (entire embryonic mesenchyme)
0003081 (lateral plate mesoderm)
0003064 (intermediate mesoderm)
0001230 (glomerular capsule)
0004875 (nephrogenic cord)
0003220 (metanephric mesenchyme)
0005749 (glomerular tuft)
0006603 (presumptive mesoderm)
0004876 (urogenital ridge)
0004199 (S-shaped body)
0004208 (nephrogenic mesenchyme)
0005095 (kidney rudiment)
0005721 (pronephric mesoderm)
0005754 (rostral part of nephrogenic cord)
0003060 (pronephric duct)
0004209 (renal vesicle)
0004198 (comma-shaped body)
0007687 (kidney field)
0007297 (presumptive pronephric mesoderm)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
