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MCL coexpression mm9:2833: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,1.12276342337695,0.429665842895536,0.458262488237196,0.180026585552633,0.192680364412534,1.40330078721041,1.2303961294884,0,0.720323114459876,0.491177518744176,1.41629496679143,1.48205120018642,1.52734633371993,0,0,0,0.255263364065407,0.227431058621176,0,0,0,0,0,0,0,0,0,0,0,0,0.264124112013994,0.615459892883158,0.410029642905161,0.200913802025349,0,0,0,0,0,0,0,0,0,0,0,1.37075115930029,1.32858630240039,1.36515447488962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0889077662030289,0,0.110544086345426,0.269611904680974,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0980757838043811,0,0,0.100004302423367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203869002627234,0.3423842760398,0.213611016799815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180325425270187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0659019793256198,0,0,1.11605299084618,0.681904819504779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055643654597214,0,0.0681778550615498,0.056886356216389,0.15063362961962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0530480122014902,0,0,0.0492938041367021,0,0,0.031895734489288,0,0,0,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0589368614163519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,1.12276342337695,0.429665842895536,0.458262488237196,0.180026585552633,0.192680364412534,1.40330078721041,1.2303961294884,0,0.720323114459876,0.491177518744176,1.41629496679143,1.48205120018642,1.52734633371993,0,0,0,0.255263364065407,0.227431058621176,0,0,0,0,0,0,0,0,0,0,0,0,0.264124112013994,0.615459892883158,0.410029642905161,0.200913802025349,0,0,0,0,0,0,0,0,0,0,0,1.37075115930029,1.32858630240039,1.36515447488962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0889077662030289,0,0.110544086345426,0.269611904680974,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0980757838043811,0,0,0.100004302423367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203869002627234,0.3423842760398,0.213611016799815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180325425270187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0659019793256198,0,0,1.11605299084618,0.681904819504779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055643654597214,0,0.0681778550615498,0.056886356216389,0.15063362961962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0530480122014902,0,0,0.0492938041367021,0,0,0.031895734489288,0,0,0,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0589368614163519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!3.30e-28!32;CL:0002032!3.30e-28!32;CL:0000037!3.30e-28!32;CL:0000566!3.30e-28!32;CL:0000837!3.30e-28!32;CL:0002031!1.91e-24!25;CL:0002320!6.56e-22!46;CL:0000134!6.56e-22!46;CL:0000791!4.25e-20!9;CL:0000789!4.25e-20!9;CL:0002420!4.25e-20!9;CL:0002419!4.25e-20!9;CL:0000790!4.25e-20!9;CL:0000219!1.71e-19!54;CL:0000838!2.96e-18!12;CL:0000738!6.07e-18!17;CL:0002087!6.07e-18!17;CL:0000624!7.22e-18!8;CL:0000542!1.12e-16!13;CL:0000051!1.12e-16!13;CL:0000084!4.25e-16!11;CL:0000827!4.25e-16!11;CL:0000893!1.61e-13!6;CL:0002489!1.61e-13!6;CL:0000898!1.61e-13!6;CL:0000809!1.61e-13!6;CL:0000810!1.61e-13!6;CL:0000895!1.61e-13!6;CL:0000808!1.61e-13!6;CL:0000894!1.61e-13!6;CL:0000806!1.61e-13!6;CL:0000807!1.61e-13!6;CL:0000805!1.61e-13!6;CL:0002425!1.61e-13!6;CL:0002436!1.61e-13!6;CL:0002427!1.61e-13!6;CL:0002428!1.61e-13!6;CL:0002429!1.61e-13!6;CL:0002433!1.61e-13!6;CL:0002431!1.61e-13!6;CL:0002432!1.61e-13!6;CL:0000034!1.77e-13!97;CL:0002242!3.93e-13!16;CL:0000049!5.68e-13!19;CL:0000723!2.09e-11!91;CL:0000048!2.09e-11!91;CL:0000553!1.85e-10!6;CL:0000556!1.85e-10!6;CL:0002371!5.61e-09!118;CL:0000763!1.62e-08!16;CL:0000839!1.68e-08!13;CL:0000050!8.52e-07!9;CL:0000548!9.11e-07!115;CL:0000255!9.11e-07!115
|ontology_enrichment_disease=DOID:0060100!1.57e-07!3;DOID:4045!1.57e-07!3
|ontology_enrichment_uberon=UBERON:0002384!6.56e-22!46;UBERON:0002193!2.65e-17!48;UBERON:0002405!2.65e-17!48;UBERON:0002390!1.67e-13!45;UBERON:0003061!1.67e-13!45;UBERON:0002371!1.62e-08!16;UBERON:0002370!2.44e-07!23;UBERON:0000974!2.44e-07!23;UBERON:0004807!2.44e-07!23;UBERON:0005058!2.44e-07!23;UBERON:0003351!2.44e-07!23;UBERON:0009113!2.44e-07!23;UBERON:0003295!2.44e-07!23;UBERON:0009722!2.44e-07!23;UBERON:0005562!2.44e-07!23;UBERON:0007690!2.44e-07!23;UBERON:0000072!2.89e-07!27;UBERON:0002465!5.17e-07!3;UBERON:0006562!5.91e-07!24;UBERON:0003408!5.91e-07!24;UBERON:0001557!5.91e-07!24;UBERON:0001042!5.91e-07!24;UBERON:0008814!5.91e-07!24;UBERON:0009145!5.91e-07!24;UBERON:0002204!8.19e-07!32
}}
}}

Revision as of 19:06, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:24507359..24507370,-p@chr13:24507359..24507370
-
Mm9::chr1:175560978..175561013,+p1@Pyhin1
Mm9::chr1:66109317..66109321,+p1@ENSMUST00000118496


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
hematopoietic cell3.30e-2832
hematopoietic oligopotent progenitor cell3.30e-2832
hematopoietic stem cell3.30e-2832
angioblastic mesenchymal cell3.30e-2832
hematopoietic multipotent progenitor cell3.30e-2832
hematopoietic lineage restricted progenitor cell1.91e-2425
connective tissue cell6.56e-2246
mesenchymal cell6.56e-2246
mature alpha-beta T cell4.25e-209
alpha-beta T cell4.25e-209
immature T cell4.25e-209
mature T cell4.25e-209
immature alpha-beta T cell4.25e-209
motile cell1.71e-1954
lymphoid lineage restricted progenitor cell2.96e-1812
leukocyte6.07e-1817
nongranular leukocyte6.07e-1817
CD4-positive, alpha-beta T cell7.22e-188
lymphocyte1.12e-1613
common lymphoid progenitor1.12e-1613
T cell4.25e-1611
pro-T cell4.25e-1611
thymocyte1.61e-136
double negative thymocyte1.61e-136
naive T cell1.61e-136
double-positive, alpha-beta thymocyte1.61e-136
CD4-positive, alpha-beta thymocyte1.61e-136
naive thymus-derived CD4-positive, alpha-beta T cell1.61e-136
DN4 thymocyte1.61e-136
DN1 thymic pro-T cell1.61e-136
DN2 thymocyte1.61e-136
DN3 thymocyte1.61e-136
immature single positive thymocyte1.61e-136
early T lineage precursor1.61e-136
mature CD4 single-positive thymocyte1.61e-136
resting double-positive thymocyte1.61e-136
double-positive blast1.61e-136
CD69-positive double-positive thymocyte1.61e-136
CD69-positive, CD4-positive single-positive thymocyte1.61e-136
CD4-positive, CD8-intermediate double-positive thymocyte1.61e-136
CD24-positive, CD4 single-positive thymocyte1.61e-136
stem cell1.77e-1397
nucleate cell3.93e-1316
common myeloid progenitor5.68e-1319
somatic stem cell2.09e-1191
multi fate stem cell2.09e-1191
megakaryocyte progenitor cell1.85e-106
megakaryocyte1.85e-106
somatic cell5.61e-09118
myeloid cell1.62e-0816
myeloid lineage restricted progenitor cell1.68e-0813
megakaryocyte-erythroid progenitor cell8.52e-079
animal cell9.11e-07115
eukaryotic cell9.11e-07115

Disease
Ontology termp-valuen
musculoskeletal system cancer1.57e-073
muscle cancer1.57e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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