FFCP PHASE1:Mm9::chr2:167015624..167015673,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16500|HGNC=|MCL_coexpression_id=2|UniProt=|association_with_transcript=0bp_to_ENSMUST00000131267_5end|description=CAGE_peak_1_at_Kcnb1_5end|id=chr2:167015624..167015673,-|ontology_enrichment_celltype=CL:0000117!1.51e-10!23;CL:0000337!1.51e-10!23;CL:0000540!8.20e-07!33;CL:0000047!8.20e-07!33;CL:0000031!8.20e-07!33;CL:0000404!8.20e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,5.73e-11,23;CL:0000337,5.73e-11,23;CL:0000540,7.89e-07,33;CL:0000047,7.89e-07,33;CL:0000031,7.89e-07,33;CL:0000404,7.89e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.18e-24!52;UBERON:0005068!5.18e-24!52;UBERON:0006241!5.18e-24!52;UBERON:0007135!5.18e-24!52;UBERON:0002346!1.90e-23!71;UBERON:0003075!1.90e-23!71;UBERON:0007284!1.90e-23!71;UBERON:0000955!4.89e-23!50;UBERON:0006238!4.89e-23!50;UBERON:0000033!1.46e-22!63;UBERON:0002616!2.40e-22!49;UBERON:0001017!5.21e-22!73;UBERON:0005743!5.21e-22!73;UBERON:0000073!1.11e-20!75;UBERON:0001016!1.11e-20!75;UBERON:0004121!4.13e-19!102;UBERON:0000924!4.13e-19!102;UBERON:0006601!4.13e-19!102;UBERON:0003056!8.27e-19!49;UBERON:0003080!9.93e-19!40;UBERON:0002780!3.96e-18!39;UBERON:0001890!3.96e-18!39;UBERON:0006240!3.96e-18!39;UBERON:0002020!1.09e-16!34;UBERON:0002791!6.23e-14!29;UBERON:0003528!6.23e-14!29;UBERON:0001893!6.23e-14!29;UBERON:0004111!1.27e-11!122;UBERON:0000025!1.42e-11!114;UBERON:0000956!5.52e-10!21;UBERON:0001869!5.52e-10!21;UBERON:0000203!5.52e-10!21;UBERON:0002619!5.71e-09!17;UBERON:0000468!1.13e-08!333;UBERON:0007811!2.68e-08!86;UBERON:0002021!3.58e-08!10;UBERON:0000411!3.58e-08!10;UBERON:0001950!3.58e-08!10;UBERON:0000153!3.78e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.77e-26,54;UBERON:0001049,4.54e-25,52;UBERON:0005068,4.54e-25,52;UBERON:0006241,4.54e-25,52;UBERON:0007135,4.54e-25,52;UBERON:0002346,1.62e-24,64;UBERON:0003075,1.62e-24,64;UBERON:0007284,1.62e-24,64;UBERON:0010314,5.39e-23,92;UBERON:0001017,8.08e-23,73;UBERON:0000955,4.36e-22,47;UBERON:0006238,4.36e-22,47;UBERON:0002616,2.24e-21,46;UBERON:0001016,3.34e-21,75;UBERON:0010371,1.74e-20,73;UBERON:0003056,1.28e-19,49;UBERON:0003080,1.55e-19,40;UBERON:0002780,6.60e-19,39;UBERON:0001890,6.60e-19,39;UBERON:0006240,6.60e-19,39;UBERON:0004121,2.39e-18,95;UBERON:0000924,2.39e-18,95;UBERON:0006601,2.39e-18,95;UBERON:0002020,2.13e-17,34;UBERON:0003528,1.64e-14,29;UBERON:0002791,1.64e-14,29;UBERON:0001893,1.64e-14,29;UBERON:0000956,2.22e-10,21;UBERON:0001869,2.22e-10,21;UBERON:0000203,2.22e-10,21;UBERON:0000025,3.76e-10,114;UBERON:0004111,3.88e-10,122;UBERON:0002619,2.56e-09,17;UBERON:0002021,1.75e-08,10;UBERON:0000411,1.75e-08,10;UBERON:0001950,1.75e-08,10|phase1_expression=8.96833543786846,0,0,0,0,0.503637815735669,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0.473193248037357,0.274228867211478,0.84877930359606,9.35476191661768,0,0.261199789138935,0.159992422793407,0,0.57423196411502,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.629484089877886,0.608261587317087,0,3.9119567217402,3.2703773457067,2.19686182734472,2.13872888981712,1.25987779462826,0,2.51673909086605,0,0,0,1.71920063963254,2.06268836910977,8.49729135610311,9.52183762689659,8.87363964908651,0.338844532069132,0,0,0,0,2.99600110518405,3.84218305321555,4.56234294157302,4.72520784160917,4.6271491497304,18.2816630018434,20.9825113904033,6.00204916153275,4.31304619582064,7.35375029288017,18.7196997698961,22.472971502993,21.1977015893616,9.49581271657396,8.59983849862651,7.8137005583514,14.5175159480718,18.5711661310454,18.1829914854404,27.1058298635774,16.3727432918968,10.6247684120421,0.227178579999552,0.377857800533928,35.073603132903,1.72084775396277,0,0,0.649776417447669,0.448026887097336,4.0728881838208,0,0,0,3.52108549441701,0,0,0,0,0,0,1.7127581957859,0,5.49235914539852,2.25530924795977,1.82679286987285,2.7673859670727,0.904335843315735,5.05631440683531,5.78066320116507,4.20231445148436,4.62717942143717,0,8.25010934731787,4.19598885074748,2.42437626567611,0,11.7112318804619,4.81727425670947,0.766371165625774,0.11981512450592,0,0,21.12048015608,43.9200578705881,19.6020789296068,51.1043501365293,56.0016851553424,25.1423533917068,32.9349764027548,7.02691610567182,2.73695335342205,2.0217820674694,13.2578369208479,1.95180664444056,1.14951052216736,1.80062129805349,2.10986744970001,3.26575195926374,4.48398020996974,5.90320864726292,28.1986674105527,0,2.26927296201383,3.34307135911503,1.97276159184817,0.834141747676794,2.43776516565517,1.02891068203972,4.97585667046233,0,0,0,0.414251545071004,1.40715635988658,0.540186184383045,0.473489471170421,0.590292695242212,1.07986979021165,1.62773761325285,3.75582761959467,3.61972561338225,6.58239399653922,10.5067177010621,23.1046107205689,25.0001978497318,15.3685080703735,15.5679445762031,30.4920425417985,9.57012895127345,0.330418782983798,0.793351699990633,1.70630600428187,1.85789337488351,2.44848176511977,1.61346819698674,1.55664630691409,1.33157938278791,2.37264530772256,2.47048432086016,3.01602250560323,0.994782360205754,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| ||
|EntrezGene=16500 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000131267_5end | |||
|description=CAGE_peak_1_at_Kcnb1_5end | |||
|id=chr2:167015624..167015673,- | |||
|ontology_enrichment_celltype=CL:0000117!1.51e-10!23;CL:0000337!1.51e-10!23;CL:0000540!8.20e-07!33;CL:0000047!8.20e-07!33;CL:0000031!8.20e-07!33;CL:0000404!8.20e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.73e-11,23;CL:0000337,5.73e-11,23;CL:0000540,7.89e-07,33;CL:0000047,7.89e-07,33;CL:0000031,7.89e-07,33;CL:0000404,7.89e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.18e-24!52;UBERON:0005068!5.18e-24!52;UBERON:0006241!5.18e-24!52;UBERON:0007135!5.18e-24!52;UBERON:0002346!1.90e-23!71;UBERON:0003075!1.90e-23!71;UBERON:0007284!1.90e-23!71;UBERON:0000955!4.89e-23!50;UBERON:0006238!4.89e-23!50;UBERON:0000033!1.46e-22!63;UBERON:0002616!2.40e-22!49;UBERON:0001017!5.21e-22!73;UBERON:0005743!5.21e-22!73;UBERON:0000073!1.11e-20!75;UBERON:0001016!1.11e-20!75;UBERON:0004121!4.13e-19!102;UBERON:0000924!4.13e-19!102;UBERON:0006601!4.13e-19!102;UBERON:0003056!8.27e-19!49;UBERON:0003080!9.93e-19!40;UBERON:0002780!3.96e-18!39;UBERON:0001890!3.96e-18!39;UBERON:0006240!3.96e-18!39;UBERON:0002020!1.09e-16!34;UBERON:0002791!6.23e-14!29;UBERON:0003528!6.23e-14!29;UBERON:0001893!6.23e-14!29;UBERON:0004111!1.27e-11!122;UBERON:0000025!1.42e-11!114;UBERON:0000956!5.52e-10!21;UBERON:0001869!5.52e-10!21;UBERON:0000203!5.52e-10!21;UBERON:0002619!5.71e-09!17;UBERON:0000468!1.13e-08!333;UBERON:0007811!2.68e-08!86;UBERON:0002021!3.58e-08!10;UBERON:0000411!3.58e-08!10;UBERON:0001950!3.58e-08!10;UBERON:0000153!3.78e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.77e-26,54;UBERON:0001049,4.54e-25,52;UBERON:0005068,4.54e-25,52;UBERON:0006241,4.54e-25,52;UBERON:0007135,4.54e-25,52;UBERON:0002346,1.62e-24,64;UBERON:0003075,1.62e-24,64;UBERON:0007284,1.62e-24,64;UBERON:0010314,5.39e-23,92;UBERON:0001017,8.08e-23,73;UBERON:0000955,4.36e-22,47;UBERON:0006238,4.36e-22,47;UBERON:0002616,2.24e-21,46;UBERON:0001016,3.34e-21,75;UBERON:0010371,1.74e-20,73;UBERON:0003056,1.28e-19,49;UBERON:0003080,1.55e-19,40;UBERON:0002780,6.60e-19,39;UBERON:0001890,6.60e-19,39;UBERON:0006240,6.60e-19,39;UBERON:0004121,2.39e-18,95;UBERON:0000924,2.39e-18,95;UBERON:0006601,2.39e-18,95;UBERON:0002020,2.13e-17,34;UBERON:0003528,1.64e-14,29;UBERON:0002791,1.64e-14,29;UBERON:0001893,1.64e-14,29;UBERON:0000956,2.22e-10,21;UBERON:0001869,2.22e-10,21;UBERON:0000203,2.22e-10,21;UBERON:0000025,3.76e-10,114;UBERON:0004111,3.88e-10,122;UBERON:0002619,2.56e-09,17;UBERON:0002021,1.75e-08,10;UBERON:0000411,1.75e-08,10;UBERON:0001950,1.75e-08,10 | |||
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| |||
|short_description=p1@Kcnb1 | |||
}} |
Revision as of 22:58, 13 September 2013
Short description: | p1@Kcnb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kcnb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000131267_5end |
EntrezGene: | Kcnb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.73e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.73e-11 | 23 |
neuron | 7.89e-07 | 33 |
neuronal stem cell | 7.89e-07 | 33 |
neuroblast | 7.89e-07 | 33 |
electrically signaling cell | 7.89e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.