FFCP PHASE1:Mm9::chr1:169619683..169619694,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=110648|HGNC=|MCL_coexpression_id=148|UniProt=Q9JKU8,Q543W2|association_with_transcript=0bp_to_ENSMUST00000028003,NM_033652,uc007dlc.1_5end|description=CAGE_peak_1_at_Lmx1a_5end|id=chr1:169619683..169619694,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000120,2.49e-12,3;CL:0002613,3.21e-12,3;CL:0002605,4.93e-09,2;CL:0002604,4.93e-09,2;CL:0000117,2.81e-07,23;CL:0000337,2.81e-07,23;CL:0002319,3.78e-07,43;CL:0000221,6.02e-07,44;CL:0000133,6.02e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000020!1.79e-09!12;UBERON:0001032!1.79e-09!12;UBERON:0004456!1.79e-09!12;UBERON:0000970!6.58e-09!9;UBERON:0000019!6.58e-09!9;UBERON:0000047!6.58e-09!9;UBERON:0004088!6.58e-09!9;UBERON:0002104!6.58e-09!9;UBERON:0001456!6.58e-09!9;UBERON:0003072!6.58e-09!9;UBERON:0003071!6.58e-09!9;UBERON:0004128!6.58e-09!9;UBERON:0000033!1.02e-08!63;UBERON:0005085!1.74e-08!13;UBERON:0003056!5.41e-08!49;UBERON:0001444!7.90e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0002420,1.13e-07,8;UBERON:0007245,1.13e-07,8;UBERON:0010009,1.13e-07,8;UBERON:0010011,1.13e-07,8;UBERON:0000454,1.13e-07,8;UBERON:0000369,1.70e-07,5;UBERON:0002435,1.70e-07,5;UBERON:0000204,1.70e-07,5;UBERON:0010082,1.70e-07,5;UBERON:0003056,3.76e-07,49;UBERON:0004121,7.09e-07,95;UBERON:0000924,7.09e-07,95;UBERON:0006601,7.09e-07,95|phase1_expression=1.12104192973356,0,0,0.30246421130683,0,1.51091344720701,2.10251376535973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.639969691173627,0.22940928106717,0,0,0,0.380046838912748,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,11.4236815021925,8.55491555926847,0,0,0,0,0,0,0,0,3.84401275633236,7.40587370980846,5.07065122804943,0,0,0,0,0,0.299600110518405,0,0,0,0,0.285650984403804,0,0,0.0958454710182364,0.919218786610021,0,0,0,3.95658863190582,3.7509933876988,6.25096044668112,0,1.12552522006336,0.45839474333043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,1.86391761218122,0.878342391034642,1.04723353406728,0.766371165625774,0,0,0,0,0,0.125654352112864,0,0,0.62336413367868,0,0,0,0,0.841767423545896,1.30120442962704,0.919608417733892,0.540186389416048,1.65775299619287,0.816437989815934,1.0249097622788,0.749613796477831,0.258703370739016,0,0,0,0,0.278047249225598,0,0,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0.210289948564127,2.77842453424068,0,0.528901133327089,0,0,0.38660238396628,0.403367049246685,0,0.570676878337677,0,0.164698954724011,0.251335208800269,0.596869416123452,0.19496408711912,0,1.29682829924817,1.1948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0.388076051348264,1.07168517515796,0.886701168211368,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90730481304255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,1.99512436700516,0.341467211508268,0.486213434136588,0.628839487883947,0.183843508450014,0.222246727801615,0.412070114477788,0.320919209591815,1.01078884705519,0,0.565879024158229,0.0936415074698824,0.384150914429216,0.34461281373368,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0.685738504770831,0.532427418478012,0.238436189947321,0.436039249896986,0.282328141245992,0.169229215783353,0.365855945745545,0,0.135804113845862,0,0.593175090620871,0.197008964751127,1.22769312950907,0.464810523557898,0.771626443924566,0.999242311751784,0.233931608445408,0.214871054048298,0,0,0|short_description=p1@Lmx1a}} | ||
|EntrezGene=110648 | |||
|HGNC= | |||
|MCL_coexpression_id=148 | |||
|UniProt=Q9JKU8,Q543W2 | |||
|association_with_transcript=0bp_to_ENSMUST00000028003,NM_033652,uc007dlc.1_5end | |||
|description=CAGE_peak_1_at_Lmx1a_5end | |||
|id=chr1:169619683..169619694,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000120,2.49e-12,3;CL:0002613,3.21e-12,3;CL:0002605,4.93e-09,2;CL:0002604,4.93e-09,2;CL:0000117,2.81e-07,23;CL:0000337,2.81e-07,23;CL:0002319,3.78e-07,43;CL:0000221,6.02e-07,44;CL:0000133,6.02e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000020!1.79e-09!12;UBERON:0001032!1.79e-09!12;UBERON:0004456!1.79e-09!12;UBERON:0000970!6.58e-09!9;UBERON:0000019!6.58e-09!9;UBERON:0000047!6.58e-09!9;UBERON:0004088!6.58e-09!9;UBERON:0002104!6.58e-09!9;UBERON:0001456!6.58e-09!9;UBERON:0003072!6.58e-09!9;UBERON:0003071!6.58e-09!9;UBERON:0004128!6.58e-09!9;UBERON:0000033!1.02e-08!63;UBERON:0005085!1.74e-08!13;UBERON:0003056!5.41e-08!49;UBERON:0001444!7.90e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002420,1.13e-07,8;UBERON:0007245,1.13e-07,8;UBERON:0010009,1.13e-07,8;UBERON:0010011,1.13e-07,8;UBERON:0000454,1.13e-07,8;UBERON:0000369,1.70e-07,5;UBERON:0002435,1.70e-07,5;UBERON:0000204,1.70e-07,5;UBERON:0010082,1.70e-07,5;UBERON:0003056,3.76e-07,49;UBERON:0004121,7.09e-07,95;UBERON:0000924,7.09e-07,95;UBERON:0006601,7.09e-07,95 | |||
|phase1_expression=1.12104192973356,0,0,0.30246421130683,0,1.51091344720701,2.10251376535973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.639969691173627,0.22940928106717,0,0,0,0.380046838912748,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,11.4236815021925,8.55491555926847,0,0,0,0,0,0,0,0,3.84401275633236,7.40587370980846,5.07065122804943,0,0,0,0,0,0.299600110518405,0,0,0,0,0.285650984403804,0,0,0.0958454710182364,0.919218786610021,0,0,0,3.95658863190582,3.7509933876988,6.25096044668112,0,1.12552522006336,0.45839474333043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,1.86391761218122,0.878342391034642,1.04723353406728,0.766371165625774,0,0,0,0,0,0.125654352112864,0,0,0.62336413367868,0,0,0,0,0.841767423545896,1.30120442962704,0.919608417733892,0.540186389416048,1.65775299619287,0.816437989815934,1.0249097622788,0.749613796477831,0.258703370739016,0,0,0,0,0.278047249225598,0,0,0.398068533636986,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0.210289948564127,2.77842453424068,0,0.528901133327089,0,0,0.38660238396628,0.403367049246685,0,0.570676878337677,0,0.164698954724011,0.251335208800269,0.596869416123452,0.19496408711912,0,1.29682829924817,1.1948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.234423373184406,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0,0,0.388076051348264,1.07168517515796,0.886701168211368,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90730481304255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03787347584177,1.99512436700516,0.341467211508268,0.486213434136588,0.628839487883947,0.183843508450014,0.222246727801615,0.412070114477788,0.320919209591815,1.01078884705519,0,0.565879024158229,0.0936415074698824,0.384150914429216,0.34461281373368,0.476293691283074,0.115884325944855,0.192909220463705,0,0.147198920134397,0.685738504770831,0.532427418478012,0.238436189947321,0.436039249896986,0.282328141245992,0.169229215783353,0.365855945745545,0,0.135804113845862,0,0.593175090620871,0.197008964751127,1.22769312950907,0.464810523557898,0.771626443924566,0.999242311751784,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p1@Lmx1a | |||
}} |
Revision as of 19:35, 13 September 2013
Short description: | p1@Lmx1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lmx1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:148 |
Association with transcript: | 0bp_to_ENSMUST00000028003, NM_033652, uc007dlc.1_5end |
EntrezGene: | Lmx1a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granule cell | 2.49e-12 | 3 |
striatum neuron | 3.21e-12 | 3 |
astrocyte of the cerebral cortex | 4.93e-09 | 2 |
astrocyte of the hippocampus | 4.93e-09 | 2 |
CNS neuron (sensu Vertebrata) | 2.81e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.81e-07 | 23 |
neural cell | 3.78e-07 | 43 |
ectodermal cell | 6.02e-07 | 44 |
neurectodermal cell | 6.02e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
basal ganglion | 1.13e-07 | 8 |
nuclear complex of neuraxis | 1.13e-07 | 8 |
aggregate regional part of brain | 1.13e-07 | 8 |
collection of basal ganglia | 1.13e-07 | 8 |
cerebral subcortex | 1.13e-07 | 8 |
corpus striatum | 1.70e-07 | 5 |
striatum | 1.70e-07 | 5 |
ventral part of telencephalon | 1.70e-07 | 5 |
future corpus striatum | 1.70e-07 | 5 |
pre-chordal neural plate | 3.76e-07 | 49 |
ectoderm-derived structure | 7.09e-07 | 95 |
ectoderm | 7.09e-07 | 95 |
presumptive ectoderm | 7.09e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.