FFCP PHASE1:Mm9::chr18:37460464..37460489,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=93874|HGNC=|MCL_coexpression_id=159|UniProt=Q91XZ7|association_with_transcript=11bp_to_ENSMUST00000051754,NM_053128,uc008epo.1_5end|description=CAGE_peak_1_at_Pcdhb3_5end|id=chr18:37460464..37460489,+|ontology_enrichment_celltype=CL:0000540!3.46e-14!33;CL:0000047!3.46e-14!33;CL:0000031!3.46e-14!33;CL:0000404!3.46e-14!33;CL:0000393!2.77e-12!39;CL:0000211!2.77e-12!39;CL:0000117!6.67e-12!23;CL:0000337!6.67e-12!23;CL:0000221!1.51e-11!44;CL:0000133!1.51e-11!44;CL:0002319!2.46e-11!43;CL:0000055!1.27e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.67e-21,23;CL:0000337,1.67e-21,23;CL:0000540,3.58e-18,33;CL:0000047,3.58e-18,33;CL:0000031,3.58e-18,33;CL:0000404,3.58e-18,33;CL:0000393,1.34e-16,39;CL:0000211,1.34e-16,39;CL:0002319,9.72e-15,43;CL:0000221,2.65e-14,44;CL:0000133,2.65e-14,44;CL:0002321,2.13e-08,70;CL:0002612,2.90e-08,3;CL:0002614,8.16e-08,3;CL:0002613,9.58e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.18e-20!75;UBERON:0001016!4.18e-20!75;UBERON:0001017!4.53e-19!73;UBERON:0005743!4.53e-19!73;UBERON:0004121!1.37e-18!102;UBERON:0000924!1.37e-18!102;UBERON:0006601!1.37e-18!102;UBERON:0002346!5.63e-15!71;UBERON:0003075!5.63e-15!71;UBERON:0007284!5.63e-15!71;UBERON:0001049!3.70e-14!52;UBERON:0005068!3.70e-14!52;UBERON:0006241!3.70e-14!52;UBERON:0007135!3.70e-14!52;UBERON:0000033!3.80e-13!63;UBERON:0002020!5.90e-12!34;UBERON:0003056!8.96e-12!49;UBERON:0000955!1.18e-11!50;UBERON:0006238!1.18e-11!50;UBERON:0002616!3.52e-11!49;UBERON:0003080!8.65e-11!40;UBERON:0002780!3.17e-10!39;UBERON:0001890!3.17e-10!39;UBERON:0006240!3.17e-10!39;UBERON:0004111!7.48e-09!122;UBERON:0002791!9.14e-09!29;UBERON:0003528!9.14e-09!29;UBERON:0001893!9.14e-09!29;UBERON:0000025!7.43e-08!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-26,75;UBERON:0001017,2.20e-25,73;UBERON:0000073,1.82e-24,54;UBERON:0001049,6.00e-23,52;UBERON:0005068,6.00e-23,52;UBERON:0006241,6.00e-23,52;UBERON:0007135,6.00e-23,52;UBERON:0004121,7.63e-21,95;UBERON:0000924,7.63e-21,95;UBERON:0006601,7.63e-21,95;UBERON:0002346,4.01e-19,64;UBERON:0003075,4.01e-19,64;UBERON:0007284,4.01e-19,64;UBERON:0002020,6.12e-17,34;UBERON:0010371,5.11e-16,73;UBERON:0003076,9.97e-15,12;UBERON:0003057,9.97e-15,12;UBERON:0002240,1.19e-14,6;UBERON:0005174,1.19e-14,6;UBERON:0001137,1.19e-14,6;UBERON:0002616,6.38e-14,46;UBERON:0000955,1.57e-13,47;UBERON:0006238,1.57e-13,47;UBERON:0001948,8.16e-13,5;UBERON:0002315,8.16e-13,5;UBERON:0010314,1.32e-12,92;UBERON:0003080,1.85e-11,40;UBERON:0002420,2.77e-10,8;UBERON:0007245,2.77e-10,8;UBERON:0010009,2.77e-10,8;UBERON:0010011,2.77e-10,8;UBERON:0000454,2.77e-10,8;UBERON:0002780,2.97e-10,39;UBERON:0001890,2.97e-10,39;UBERON:0006240,2.97e-10,39;UBERON:0000025,6.08e-10,114;UBERON:0003056,6.64e-10,49;UBERON:0002950,8.45e-10,4;UBERON:0001891,8.45e-10,4;UBERON:0009616,8.45e-10,4;UBERON:0010286,8.45e-10,4;UBERON:0003528,2.14e-09,29;UBERON:0002791,2.14e-09,29;UBERON:0001893,2.14e-09,29;UBERON:0004111,7.06e-09,122;UBERON:0002257,2.90e-08,3;UBERON:0002038,8.16e-08,3;UBERON:0009663,8.16e-08,3;UBERON:0009661,8.16e-08,3;UBERON:0000125,8.16e-08,3;UBERON:0002308,8.16e-08,3;UBERON:0011216,3.31e-07,194|phase1_expression=0.960893082628764,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0.194429899074283,0.419959264876088,0,0,0,0,1.28629718017973,0.573066879877513,0,1.82084814773638,2.64495489636016,0.633831403506179,0,0,0,0,0.7104801149461,0.299600110518405,0,0.829516898467821,0.810035629990144,0.841299845405528,1.99955689082663,2.65042249141936,0.734944795289724,0.766763768145891,0,0,3.57524546638526,3.22573719838111,2.50583946687368,2.19570344645783,1.04182674111352,1.11673199600552,1.68828783009504,3.0559649555362,2.65165726926301,2.70506193518296,1.3047961207771,0.530083353332288,1.5870027622425,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.34255163915718,0,0.29688427812965,0.520455980298408,0.608930956624282,0,0.150722640552623,0.23517741427141,0.125666591329675,0,0.289198713839823,0,0.161766849947409,0,0,0,0,1.04723353406728,0,0,0,0,1.49790639404823,0.457500602818626,0.125654352112864,2.60736480288415,1.27857728665165,2.0778804455956,0.973447578406546,0.712875546952214,0.248813941220186,0,0.420883711772948,0.260240885925407,0.229902104433473,0.540186389416048,1.05493372485001,0.476255494059295,0.384341160854549,0.374806898238915,0,0.215567992932842,0.189106080167819,0.527853372491847,1.31517439456545,1.39023624612799,0.348252166522167,0.61734640922383,0.398068533636986,0,0,0,0.414251545071004,0.469052119962192,0.36012412292203,0.23674473558521,0.590292695242212,0.154267112887378,0.232533944750408,0.536546802799238,0.116765342367169,0.16455984991348,0.164167464079095,0.405344047729279,0.146199987425332,0.439100230582101,0,2.3131894342054,0.411618449517138,0,0,0,0,0,0.201683524623343,0,0.380451252225118,0,0.329397909448022,0,0,0,0,0.216138049874694,0.19914127325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| ||
|EntrezGene=93874 | |||
|HGNC= | |||
|MCL_coexpression_id=159 | |||
|UniProt=Q91XZ7 | |||
|association_with_transcript=11bp_to_ENSMUST00000051754,NM_053128,uc008epo.1_5end | |||
|description=CAGE_peak_1_at_Pcdhb3_5end | |||
|id=chr18:37460464..37460489,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.46e-14!33;CL:0000047!3.46e-14!33;CL:0000031!3.46e-14!33;CL:0000404!3.46e-14!33;CL:0000393!2.77e-12!39;CL:0000211!2.77e-12!39;CL:0000117!6.67e-12!23;CL:0000337!6.67e-12!23;CL:0000221!1.51e-11!44;CL:0000133!1.51e-11!44;CL:0002319!2.46e-11!43;CL:0000055!1.27e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.67e-21,23;CL:0000337,1.67e-21,23;CL:0000540,3.58e-18,33;CL:0000047,3.58e-18,33;CL:0000031,3.58e-18,33;CL:0000404,3.58e-18,33;CL:0000393,1.34e-16,39;CL:0000211,1.34e-16,39;CL:0002319,9.72e-15,43;CL:0000221,2.65e-14,44;CL:0000133,2.65e-14,44;CL:0002321,2.13e-08,70;CL:0002612,2.90e-08,3;CL:0002614,8.16e-08,3;CL:0002613,9.58e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.18e-20!75;UBERON:0001016!4.18e-20!75;UBERON:0001017!4.53e-19!73;UBERON:0005743!4.53e-19!73;UBERON:0004121!1.37e-18!102;UBERON:0000924!1.37e-18!102;UBERON:0006601!1.37e-18!102;UBERON:0002346!5.63e-15!71;UBERON:0003075!5.63e-15!71;UBERON:0007284!5.63e-15!71;UBERON:0001049!3.70e-14!52;UBERON:0005068!3.70e-14!52;UBERON:0006241!3.70e-14!52;UBERON:0007135!3.70e-14!52;UBERON:0000033!3.80e-13!63;UBERON:0002020!5.90e-12!34;UBERON:0003056!8.96e-12!49;UBERON:0000955!1.18e-11!50;UBERON:0006238!1.18e-11!50;UBERON:0002616!3.52e-11!49;UBERON:0003080!8.65e-11!40;UBERON:0002780!3.17e-10!39;UBERON:0001890!3.17e-10!39;UBERON:0006240!3.17e-10!39;UBERON:0004111!7.48e-09!122;UBERON:0002791!9.14e-09!29;UBERON:0003528!9.14e-09!29;UBERON:0001893!9.14e-09!29;UBERON:0000025!7.43e-08!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-26,75;UBERON:0001017,2.20e-25,73;UBERON:0000073,1.82e-24,54;UBERON:0001049,6.00e-23,52;UBERON:0005068,6.00e-23,52;UBERON:0006241,6.00e-23,52;UBERON:0007135,6.00e-23,52;UBERON:0004121,7.63e-21,95;UBERON:0000924,7.63e-21,95;UBERON:0006601,7.63e-21,95;UBERON:0002346,4.01e-19,64;UBERON:0003075,4.01e-19,64;UBERON:0007284,4.01e-19,64;UBERON:0002020,6.12e-17,34;UBERON:0010371,5.11e-16,73;UBERON:0003076,9.97e-15,12;UBERON:0003057,9.97e-15,12;UBERON:0002240,1.19e-14,6;UBERON:0005174,1.19e-14,6;UBERON:0001137,1.19e-14,6;UBERON:0002616,6.38e-14,46;UBERON:0000955,1.57e-13,47;UBERON:0006238,1.57e-13,47;UBERON:0001948,8.16e-13,5;UBERON:0002315,8.16e-13,5;UBERON:0010314,1.32e-12,92;UBERON:0003080,1.85e-11,40;UBERON:0002420,2.77e-10,8;UBERON:0007245,2.77e-10,8;UBERON:0010009,2.77e-10,8;UBERON:0010011,2.77e-10,8;UBERON:0000454,2.77e-10,8;UBERON:0002780,2.97e-10,39;UBERON:0001890,2.97e-10,39;UBERON:0006240,2.97e-10,39;UBERON:0000025,6.08e-10,114;UBERON:0003056,6.64e-10,49;UBERON:0002950,8.45e-10,4;UBERON:0001891,8.45e-10,4;UBERON:0009616,8.45e-10,4;UBERON:0010286,8.45e-10,4;UBERON:0003528,2.14e-09,29;UBERON:0002791,2.14e-09,29;UBERON:0001893,2.14e-09,29;UBERON:0004111,7.06e-09,122;UBERON:0002257,2.90e-08,3;UBERON:0002038,8.16e-08,3;UBERON:0009663,8.16e-08,3;UBERON:0009661,8.16e-08,3;UBERON:0000125,8.16e-08,3;UBERON:0002308,8.16e-08,3;UBERON:0011216,3.31e-07,194 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0.194429899074283,0.419959264876088,0,0,0,0,1.28629718017973,0.573066879877513,0,1.82084814773638,2.64495489636016,0.633831403506179,0,0,0,0,0.7104801149461,0.299600110518405,0,0.829516898467821,0.810035629990144,0.841299845405528,1.99955689082663,2.65042249141936,0.734944795289724,0.766763768145891,0,0,3.57524546638526,3.22573719838111,2.50583946687368,2.19570344645783,1.04182674111352,1.11673199600552,1.68828783009504,3.0559649555362,2.65165726926301,2.70506193518296,1.3047961207771,0.530083353332288,1.5870027622425,0,0,0,0,0,0,0,0,0,0,0.422530259330042,0,0,0,0,0,0,0.34255163915718,0,0.29688427812965,0.520455980298408,0.608930956624282,0,0.150722640552623,0.23517741427141,0.125666591329675,0,0.289198713839823,0,0.161766849947409,0,0,0,0,1.04723353406728,0,0,0,0,1.49790639404823,0.457500602818626,0.125654352112864,2.60736480288415,1.27857728665165,2.0778804455956,0.973447578406546,0.712875546952214,0.248813941220186,0,0.420883711772948,0.260240885925407,0.229902104433473,0.540186389416048,1.05493372485001,0.476255494059295,0.384341160854549,0.374806898238915,0,0.215567992932842,0.189106080167819,0.527853372491847,1.31517439456545,1.39023624612799,0.348252166522167,0.61734640922383,0.398068533636986,0,0,0,0.414251545071004,0.469052119962192,0.36012412292203,0.23674473558521,0.590292695242212,0.154267112887378,0.232533944750408,0.536546802799238,0.116765342367169,0.16455984991348,0.164167464079095,0.405344047729279,0.146199987425332,0.439100230582101,0,2.3131894342054,0.411618449517138,0,0,0,0,0,0.201683524623343,0,0.380451252225118,0,0.329397909448022,0,0,0,0,0.216138049874694,0.199141273254367,0.569003702859245,0.114248512609729,0,0.203651327845314,0,0.280543279561274,0.126473074248515,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,1.10851914099963,0.189491411770485,0.162964976442026,0.169745085775188,0,0.837531287209079,0.714130922658041,0.390267295715598,0.630540576424764,1.32878813789265,0.956728611944923,0.327726629431476,0.345369963731791,0.144649058581512,0,0,0,0.275936746304732,1.76605648986571,1.17211686592203,0,0,0.94652465824877,0,0.215423397732799,0.477937595905104,0.891194696329576,1.69845918473299,0.809621403349789,0.292255857911312,1.58115111178609,0.963963949265421,0.141940085208269,0.178065603667255,0.977321756121456,0.164970122972535,0,0.242780636154981,0.302323556964751,0.188605079755898,0.295301892880773,0.307435147943927,0,0.363533729477506,0.356497378384721,0,0,0,1.02131881726136,0,0.129358683782755,0.214337035031592,1.24138163549592,0.178368817602071,0.822745103010605,0.304464949114599,0,0,0.220528398054962,0,0.161464426695906,0,0.238744688006273,0,0,1.29797711407357,0,0.412773735926445,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.432021363287205,0.418176592028937,0,0.269728692769641,0.247960367176008,0.26175594198403,0.259229946583586,0,0,0.448549638131936,0.496375471371293,0,0.904118764344118,0.506868376472335,0.58678619322877,0.5208175393758,0,0,0,0,0.202725215290164,0,0.129920822977795,0,0.198681354781265,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,0.386379188064381,0,0.73260649706906,0.214368379079066,0.501572104035363,1.12950368523413,0.460325236507177,0.572895513439397,1.71853182343688,0,0.755393897389701,0,1.35096360967266,0.906284817968409,1.55328093525546,0.103787347584177,0.399024873401031,0.341467211508268,0.486213434136588,0,0,0,0.206035057238894,0.64183841918363,0.505394423527595,0.50695859978048,0.188626341386076,0.37456602987953,0.128050304809739,0.459483751644906,0.476293691283074,0.347652977834566,0.192909220463705,0.824171801606613,0.294397840268795,0,0.354951612318675,0.238436189947321,0.436039249896986,0.376437521661322,0.423073039458382,0.548783918618318,0.263069711437843,0,0,0.118635018124174,0,0,0.464810523557898,0.192906610981141,0.249810577937946,0.233931608445408,0.859484216193193,0.191288332068843,0,0.463735671240843 | |||
|short_description=p1@Pcdhb3 | |||
}} |
Revision as of 16:05, 13 September 2013
Short description: | p1@Pcdhb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pcdhb3_5end |
Coexpression cluster: | MCL_coexpression_mm9:159 |
Association with transcript: | 11bp_to_ENSMUST00000051754, NM_053128, uc008epo.1_5end |
EntrezGene: | Pcdhb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.67e-21 | 23 |
neuroblast (sensu Vertebrata) | 1.67e-21 | 23 |
neuron | 3.58e-18 | 33 |
neuronal stem cell | 3.58e-18 | 33 |
neuroblast | 3.58e-18 | 33 |
electrically signaling cell | 3.58e-18 | 33 |
electrically responsive cell | 1.34e-16 | 39 |
electrically active cell | 1.34e-16 | 39 |
neural cell | 9.72e-15 | 43 |
ectodermal cell | 2.65e-14 | 44 |
neurectodermal cell | 2.65e-14 | 44 |
embryonic cell | 2.13e-08 | 70 |
neuron of the ventral spinal cord | 2.90e-08 | 3 |
neuron of the substantia nigra | 8.16e-08 | 3 |
striatum neuron | 9.58e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.