FFCP PHASE1:Mm9::chr7:106684966..106684968,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=142|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:106684966..106684968,+|id=chr7:106684966..106684968,+|ontology_enrichment_celltype=CL:0000838!2.87e-18!12;CL:0000542!8.19e-17!13;CL:0000051!8.19e-17!13;CL:0000988!9.73e-16!32;CL:0002032!9.73e-16!32;CL:0000037!9.73e-16!32;CL:0000566!9.73e-16!32;CL:0000837!9.73e-16!32;CL:0000084!6.49e-15!11;CL:0000827!6.49e-15!11;CL:0000791!4.04e-13!9;CL:0000789!4.04e-13!9;CL:0002420!4.04e-13!9;CL:0002419!4.04e-13!9;CL:0000790!4.04e-13!9;CL:0000738!1.07e-12!17;CL:0002087!1.07e-12!17;CL:0002320!1.89e-10!46;CL:0000134!1.89e-10!46;CL:0000034!7.36e-10!97;CL:0000624!1.08e-09!8;CL:0000723!3.27e-09!91;CL:0000048!3.27e-09!91;CL:0000219!1.18e-08!54;CL:0002031!2.10e-08!25;CL:0000063!3.72e-08!66;CL:0000144!2.13e-07!121;CL:0000012!2.13e-07!121|ontology_enrichment_celltype_v019_2=CL:0000791,1.60e-15,9;CL:0000789,1.60e-15,9;CL:0002420,1.60e-15,9;CL:0002419,1.60e-15,9;CL:0000790,1.60e-15,9;CL:0000084,8.94e-13,11;CL:0000827,8.94e-13,11;CL:0000838,9.64e-12,12;CL:0000542,7.23e-11,13;CL:0000051,7.23e-11,13;CL:0000624,3.38e-10,8;CL:0000625,5.62e-10,1;CL:0000815,1.03e-09,1;CL:0000792,1.03e-09,1;CL:0000355,1.67e-09,9;CL:0000738,2.18e-08,17;CL:0002087,2.18e-08,17|ontology_enrichment_disease=DOID:0060100!1.72e-15!3;DOID:4045!1.72e-15!3;DOID:0050686!5.48e-08!6|ontology_enrichment_disease_v019_2=DOID:0060100,3.80e-27,3;DOID:4045,3.80e-27,3;DOID:0050686,6.10e-14,6|ontology_enrichment_uberon=UBERON:0002384!1.89e-10!46|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.67e-09,9;UBERON:0002036,1.67e-09,9;UBERON:0002385,1.67e-09,9;UBERON:0000486,1.67e-09,9;UBERON:0007503,1.67e-09,9;UBERON:0001015,1.67e-09,9;UBERON:0002329,1.67e-09,9;UBERON:0003082,1.67e-09,9;UBERON:0003059,1.67e-09,9;UBERON:0007282,1.67e-09,9;UBERON:0004290,1.67e-09,9;UBERON:0009618,1.67e-09,9;UBERON:0000383,1.31e-08,10;UBERON:0007524,7.05e-08,11;UBERON:0003077,7.05e-08,11;UBERON:0007285,7.05e-08,11|phase1_expression=0,0,0,0,0,0,0,1.42035655785734,0,0,0,0,2.05440875917447,0.874204024189974,0,0,0,0,0,0,0,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,8.37063261473815,14.8453715459522,4.71171369576418,18.2351761289614,75.8180488303875,12.1377588257788,0,0,0,0,0,0,0,0,0,0.167782606057736,1.45072428402269,3.36093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr7:106684966..106684968,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=142 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:106684966..106684968,+ | |||
|id=chr7:106684966..106684968,+ | |||
|ontology_enrichment_celltype=CL:0000838!2.87e-18!12;CL:0000542!8.19e-17!13;CL:0000051!8.19e-17!13;CL:0000988!9.73e-16!32;CL:0002032!9.73e-16!32;CL:0000037!9.73e-16!32;CL:0000566!9.73e-16!32;CL:0000837!9.73e-16!32;CL:0000084!6.49e-15!11;CL:0000827!6.49e-15!11;CL:0000791!4.04e-13!9;CL:0000789!4.04e-13!9;CL:0002420!4.04e-13!9;CL:0002419!4.04e-13!9;CL:0000790!4.04e-13!9;CL:0000738!1.07e-12!17;CL:0002087!1.07e-12!17;CL:0002320!1.89e-10!46;CL:0000134!1.89e-10!46;CL:0000034!7.36e-10!97;CL:0000624!1.08e-09!8;CL:0000723!3.27e-09!91;CL:0000048!3.27e-09!91;CL:0000219!1.18e-08!54;CL:0002031!2.10e-08!25;CL:0000063!3.72e-08!66;CL:0000144!2.13e-07!121;CL:0000012!2.13e-07!121 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.60e-15,9;CL:0000789,1.60e-15,9;CL:0002420,1.60e-15,9;CL:0002419,1.60e-15,9;CL:0000790,1.60e-15,9;CL:0000084,8.94e-13,11;CL:0000827,8.94e-13,11;CL:0000838,9.64e-12,12;CL:0000542,7.23e-11,13;CL:0000051,7.23e-11,13;CL:0000624,3.38e-10,8;CL:0000625,5.62e-10,1;CL:0000815,1.03e-09,1;CL:0000792,1.03e-09,1;CL:0000355,1.67e-09,9;CL:0000738,2.18e-08,17;CL:0002087,2.18e-08,17 | |||
|ontology_enrichment_disease=DOID:0060100!1.72e-15!3;DOID:4045!1.72e-15!3;DOID:0050686!5.48e-08!6 | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,3.80e-27,3;DOID:4045,3.80e-27,3;DOID:0050686,6.10e-14,6 | |||
|ontology_enrichment_uberon=UBERON:0002384!1.89e-10!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.67e-09,9;UBERON:0002036,1.67e-09,9;UBERON:0002385,1.67e-09,9;UBERON:0000486,1.67e-09,9;UBERON:0007503,1.67e-09,9;UBERON:0001015,1.67e-09,9;UBERON:0002329,1.67e-09,9;UBERON:0003082,1.67e-09,9;UBERON:0003059,1.67e-09,9;UBERON:0007282,1.67e-09,9;UBERON:0004290,1.67e-09,9;UBERON:0009618,1.67e-09,9;UBERON:0000383,1.31e-08,10;UBERON:0007524,7.05e-08,11;UBERON:0003077,7.05e-08,11;UBERON:0007285,7.05e-08,11 | |||
|phase1_expression=0,0,0,0,0,0,0,1.42035655785734,0,0,0,0,2.05440875917447,0.874204024189974,0,0,0,0,0,0,0,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,8.37063261473815,14.8453715459522,4.71171369576418,18.2351761289614,75.8180488303875,12.1377588257788,0,0,0,0,0,0,0,0,0,0.167782606057736,1.45072428402269,3.36093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:106684966..106684968,+ | |||
}} |
Revision as of 11:13, 14 September 2013
Short description: | p@chr7:106684966..106684968, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:106684966..106684968, + |
Coexpression cluster: | MCL_coexpression_mm9:142 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.60e-15 | 9 |
alpha-beta T cell | 1.60e-15 | 9 |
immature T cell | 1.60e-15 | 9 |
mature T cell | 1.60e-15 | 9 |
immature alpha-beta T cell | 1.60e-15 | 9 |
T cell | 8.94e-13 | 11 |
pro-T cell | 8.94e-13 | 11 |
lymphoid lineage restricted progenitor cell | 9.64e-12 | 12 |
lymphocyte | 7.23e-11 | 13 |
common lymphoid progenitor | 7.23e-11 | 13 |
CD4-positive, alpha-beta T cell | 3.38e-10 | 8 |
CD8-positive, alpha-beta T cell | 5.62e-10 | 1 |
regulatory T cell | 1.03e-09 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.03e-09 | 1 |
multi-potent skeletal muscle stem cell | 1.67e-09 | 9 |
leukocyte | 2.18e-08 | 17 |
nongranular leukocyte | 2.18e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.67e-09 | 9 |
striated muscle tissue | 1.67e-09 | 9 |
muscle tissue | 1.67e-09 | 9 |
multilaminar epithelium | 1.67e-09 | 9 |
epithelial vesicle | 1.67e-09 | 9 |
musculature | 1.67e-09 | 9 |
somite | 1.67e-09 | 9 |
myotome | 1.67e-09 | 9 |
presomitic mesoderm | 1.67e-09 | 9 |
presumptive segmental plate | 1.67e-09 | 9 |
dermomyotome | 1.67e-09 | 9 |
trunk paraxial mesoderm | 1.67e-09 | 9 |
musculature of body | 1.31e-08 | 10 |
dense mesenchyme tissue | 7.05e-08 | 11 |
paraxial mesoderm | 7.05e-08 | 11 |
presumptive paraxial mesoderm | 7.05e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 3.80e-27 | 3 |
muscle cancer | 3.80e-27 | 3 |
organ system cancer | 6.10e-14 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.