FFCP PHASE1:Mm9::chr6:58781507..58781523,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=73998|HGNC=|MCL_coexpression_id=1|UniProt=D3Z2S3|association_with_transcript=10bp_to_ENSMUST00000122981_5end|description=CAGE_peak_2_at_Herc3_5end|id=chr6:58781507..58781523,+|ontology_enrichment_celltype=CL:0000117!5.89e-10!23;CL:0000337!5.89e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.79e-10,23;CL:0000337,2.79e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!7.97e-15!34;UBERON:0001049!2.02e-14!52;UBERON:0005068!2.02e-14!52;UBERON:0006241!2.02e-14!52;UBERON:0007135!2.02e-14!52;UBERON:0000955!1.30e-13!50;UBERON:0006238!1.30e-13!50;UBERON:0000073!1.35e-13!75;UBERON:0001016!1.35e-13!75;UBERON:0001017!2.14e-13!73;UBERON:0005743!2.14e-13!73;UBERON:0002616!3.78e-13!49;UBERON:0002791!2.02e-12!29;UBERON:0003528!2.02e-12!29;UBERON:0001893!2.02e-12!29;UBERON:0000033!1.23e-11!63;UBERON:0007811!1.58e-11!86;UBERON:0003080!2.34e-10!40;UBERON:0000956!3.30e-10!21;UBERON:0001869!3.30e-10!21;UBERON:0000203!3.30e-10!21;UBERON:0002780!5.99e-10!39;UBERON:0001890!5.99e-10!39;UBERON:0006240!5.99e-10!39;UBERON:0002346!1.01e-09!71;UBERON:0003075!1.01e-09!71;UBERON:0007284!1.01e-09!71;UBERON:0000153!2.37e-09!94;UBERON:0004121!3.36e-09!102;UBERON:0000924!3.36e-09!102;UBERON:0006601!3.36e-09!102;UBERON:0003056!6.10e-09!49;UBERON:0002021!4.39e-08!10;UBERON:0000411!4.39e-08!10;UBERON:0001950!4.39e-08!10;UBERON:0000064!4.55e-08!99;UBERON:0002619!5.79e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.60e-15,54;UBERON:0002020,4.19e-15,34;UBERON:0001049,2.19e-14,52;UBERON:0005068,2.19e-14,52;UBERON:0006241,2.19e-14,52;UBERON:0007135,2.19e-14,52;UBERON:0001016,3.70e-13,75;UBERON:0001017,6.01e-13,73;UBERON:0003528,1.30e-12,29;UBERON:0002791,1.30e-12,29;UBERON:0001893,1.30e-12,29;UBERON:0010314,3.75e-12,92;UBERON:0000955,5.86e-12,47;UBERON:0006238,5.86e-12,47;UBERON:0002346,8.35e-12,64;UBERON:0003075,8.35e-12,64;UBERON:0007284,8.35e-12,64;UBERON:0002616,1.69e-11,46;UBERON:0004121,2.10e-10,95;UBERON:0000924,2.10e-10,95;UBERON:0006601,2.10e-10,95;UBERON:0003080,2.45e-10,40;UBERON:0000956,2.64e-10,21;UBERON:0001869,2.64e-10,21;UBERON:0000203,2.64e-10,21;UBERON:0002780,6.43e-10,39;UBERON:0001890,6.43e-10,39;UBERON:0006240,6.43e-10,39;UBERON:0010371,1.40e-09,73;UBERON:0003056,1.03e-08,49;UBERON:0002021,2.45e-08,10;UBERON:0000411,2.45e-08,10;UBERON:0001950,2.45e-08,10;UBERON:0002619,5.51e-08,17|phase1_expression=1.12104192973356,0.697950815278722,3.18499467572675,7.56160528267075,4.00716583957078,2.01455126294268,0.934450562382103,10.0716192284429,9.01047821770667,7.72412936862578,0.856089841127525,0.957265907944037,17.8048759128454,13.7250031797826,0.999329285446988,2.02475267389826,0,3.15462165358238,3.83920414096069,2.54633791078818,3.31668831589172,0,0,1.27993938234725,2.52350209173887,4.59385571292016,1.29228598847722,1.72376986148711,1.71021077510736,1.26015064879965,0.886922042621219,0,0.61506478758457,0,1.73310971850765,1.32987716286794,1.83752420636132,1.67412652294763,0,1.0470474879476,1.76469446409304,1.36609096991689,1.94204141212461,0,0,0.183546752161682,0.782391344348039,1.96222640742402,0.878744730937887,1.36100929351998,3.21968769738334,1.43752564364972,4.19456515144341,13.7818806982155,8.73843877770406,2.31533492432352,0.573066879877513,2.06268836910977,2.22548106945558,3.70293685490423,5.07065122804943,1.0165335962074,0.889294796111139,1.3498495759221,1.97773272513395,0.7104801149461,1.49800055259202,0.384218305321555,8.39885859698669,8.10035629990144,8.62332341540666,6.85562362569129,5.96345060569357,2.57230678351403,3.64212789869298,6.43453150627015,5.50579404996943,9.95961237064464,9.67721159514334,3.29715719325485,4.57438218012048,1.04182674111352,8.09630697104005,7.31591393041184,8.70950012327818,7.66034322231536,6.69146899755784,3.72798891650601,3.86203585999239,1.43585964202892,2.89864488701678,1.72084775396277,0,0.539703191637817,0.649776417447669,0.448026887097336,2.10666630197628,0.340860645156116,1.03914401841148,0.35333957451034,2.53518155598025,0,0,0,0.649473123033642,3.04031838570118,4.04419556011827,1.37020655662872,3.88406825470758,1.63286352971307,1.04091196059682,0.304465478312141,1.38369298353635,0.301445281105245,1.17588707135705,0.753999547978053,2.71914464507811,2.74738778147832,0,1.7794353494215,2.42925670306433,0,0,15.2246014446005,7.33063473847093,1.78819938646014,1.07833612055328,0.599902730993408,0.254140454146129,4.79330046095433,5.94750783664214,2.63874139437015,13.3844726548053,12.0186264945255,5.61027720310812,4.2182728397617,1.12023300235348,0.497627882440372,1.26361379216837,6.10281382070775,0.520481771850815,0.689706313300419,1.0803727788321,0.90422890701429,1.97305847538851,1.15302348256365,2.34254311399322,6.72628763921441,0.431135985865684,0.945530400839096,0.879755620819744,1.09597866213787,0.278047249225598,0.696504333044333,1.02891068203972,0.199034266818493,0,0.257347907114715,0.852490498186778,1.24275463521301,0.938104239924385,1.98068267607116,3.31442629819294,2.36117078096885,3.70241070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| ||
|EntrezGene=73998 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=D3Z2S3 | |||
|association_with_transcript=10bp_to_ENSMUST00000122981_5end | |||
|description=CAGE_peak_2_at_Herc3_5end | |||
|id=chr6:58781507..58781523,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.89e-10!23;CL:0000337!5.89e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.79e-10,23;CL:0000337,2.79e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.97e-15!34;UBERON:0001049!2.02e-14!52;UBERON:0005068!2.02e-14!52;UBERON:0006241!2.02e-14!52;UBERON:0007135!2.02e-14!52;UBERON:0000955!1.30e-13!50;UBERON:0006238!1.30e-13!50;UBERON:0000073!1.35e-13!75;UBERON:0001016!1.35e-13!75;UBERON:0001017!2.14e-13!73;UBERON:0005743!2.14e-13!73;UBERON:0002616!3.78e-13!49;UBERON:0002791!2.02e-12!29;UBERON:0003528!2.02e-12!29;UBERON:0001893!2.02e-12!29;UBERON:0000033!1.23e-11!63;UBERON:0007811!1.58e-11!86;UBERON:0003080!2.34e-10!40;UBERON:0000956!3.30e-10!21;UBERON:0001869!3.30e-10!21;UBERON:0000203!3.30e-10!21;UBERON:0002780!5.99e-10!39;UBERON:0001890!5.99e-10!39;UBERON:0006240!5.99e-10!39;UBERON:0002346!1.01e-09!71;UBERON:0003075!1.01e-09!71;UBERON:0007284!1.01e-09!71;UBERON:0000153!2.37e-09!94;UBERON:0004121!3.36e-09!102;UBERON:0000924!3.36e-09!102;UBERON:0006601!3.36e-09!102;UBERON:0003056!6.10e-09!49;UBERON:0002021!4.39e-08!10;UBERON:0000411!4.39e-08!10;UBERON:0001950!4.39e-08!10;UBERON:0000064!4.55e-08!99;UBERON:0002619!5.79e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.60e-15,54;UBERON:0002020,4.19e-15,34;UBERON:0001049,2.19e-14,52;UBERON:0005068,2.19e-14,52;UBERON:0006241,2.19e-14,52;UBERON:0007135,2.19e-14,52;UBERON:0001016,3.70e-13,75;UBERON:0001017,6.01e-13,73;UBERON:0003528,1.30e-12,29;UBERON:0002791,1.30e-12,29;UBERON:0001893,1.30e-12,29;UBERON:0010314,3.75e-12,92;UBERON:0000955,5.86e-12,47;UBERON:0006238,5.86e-12,47;UBERON:0002346,8.35e-12,64;UBERON:0003075,8.35e-12,64;UBERON:0007284,8.35e-12,64;UBERON:0002616,1.69e-11,46;UBERON:0004121,2.10e-10,95;UBERON:0000924,2.10e-10,95;UBERON:0006601,2.10e-10,95;UBERON:0003080,2.45e-10,40;UBERON:0000956,2.64e-10,21;UBERON:0001869,2.64e-10,21;UBERON:0000203,2.64e-10,21;UBERON:0002780,6.43e-10,39;UBERON:0001890,6.43e-10,39;UBERON:0006240,6.43e-10,39;UBERON:0010371,1.40e-09,73;UBERON:0003056,1.03e-08,49;UBERON:0002021,2.45e-08,10;UBERON:0000411,2.45e-08,10;UBERON:0001950,2.45e-08,10;UBERON:0002619,5.51e-08,17 | |||
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| |||
|short_description=p2@Herc3 | |||
}} |
Revision as of 10:24, 14 September 2013
Short description: | p2@Herc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Herc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 10bp_to_ENSMUST00000122981_5end |
EntrezGene: | Herc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.79e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.79e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.60e-15 | 54 |
gray matter | 4.19e-15 | 34 |
neural tube | 2.19e-14 | 52 |
neural rod | 2.19e-14 | 52 |
future spinal cord | 2.19e-14 | 52 |
neural keel | 2.19e-14 | 52 |
nervous system | 3.70e-13 | 75 |
central nervous system | 6.01e-13 | 73 |
brain grey matter | 1.30e-12 | 29 |
regional part of telencephalon | 1.30e-12 | 29 |
telencephalon | 1.30e-12 | 29 |
structure with developmental contribution from neural crest | 3.75e-12 | 92 |
brain | 5.86e-12 | 47 |
future brain | 5.86e-12 | 47 |
neurectoderm | 8.35e-12 | 64 |
neural plate | 8.35e-12 | 64 |
presumptive neural plate | 8.35e-12 | 64 |
regional part of brain | 1.69e-11 | 46 |
ectoderm-derived structure | 2.10e-10 | 95 |
ectoderm | 2.10e-10 | 95 |
presumptive ectoderm | 2.10e-10 | 95 |
anterior neural tube | 2.45e-10 | 40 |
cerebral cortex | 2.64e-10 | 21 |
cerebral hemisphere | 2.64e-10 | 21 |
pallium | 2.64e-10 | 21 |
regional part of forebrain | 6.43e-10 | 39 |
forebrain | 6.43e-10 | 39 |
future forebrain | 6.43e-10 | 39 |
ecto-epithelium | 1.40e-09 | 73 |
pre-chordal neural plate | 1.03e-08 | 49 |
occipital lobe | 2.45e-08 | 10 |
visual cortex | 2.45e-08 | 10 |
neocortex | 2.45e-08 | 10 |
regional part of cerebral cortex | 5.51e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.