FFCP PHASE1:Mm9::chr10:80204967..80205025,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11776|HGNC=|MCL_coexpression_id=1920|UniProt=O54774|association_with_transcript=-11bp_to_ENSMUST00000020420,NM_007460,uc007gek.1_5end|description=CAGE_peak_1_at_Ap3d1_5end|id=chr10:80204967..80205025,-|ontology_enrichment_celltype=CL:0000393!4.43e-09!39;CL:0000211!4.43e-09!39;CL:0000055!6.64e-09!50;CL:0002319!3.19e-07!43;CL:0000117!4.12e-07!23;CL:0000337!4.12e-07!23|ontology_enrichment_celltype_v019_2=CL:0000393,4.43e-09,39;CL:0000211,4.43e-09,39;CL:0002319,3.19e-07,43;CL:0000117,4.12e-07,23;CL:0000337,4.12e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.53e-18!73;UBERON:0005743!2.53e-18!73;UBERON:0000073!5.72e-18!75;UBERON:0001016!5.72e-18!75;UBERON:0000955!1.97e-15!50;UBERON:0006238!1.97e-15!50;UBERON:0001049!2.81e-15!52;UBERON:0005068!2.81e-15!52;UBERON:0006241!2.81e-15!52;UBERON:0007135!2.81e-15!52;UBERON:0002616!8.19e-15!49;UBERON:0004121!7.38e-14!102;UBERON:0000924!7.38e-14!102;UBERON:0006601!7.38e-14!102;UBERON:0007023!1.14e-11!51;UBERON:0000033!1.25e-11!63;UBERON:0002020!2.50e-11!34;UBERON:0003080!3.74e-11!40;UBERON:0002780!1.35e-10!39;UBERON:0001890!1.35e-10!39;UBERON:0006240!1.35e-10!39;UBERON:0002346!1.67e-10!71;UBERON:0003075!1.67e-10!71;UBERON:0007284!1.67e-10!71;UBERON:0002791!7.29e-10!29;UBERON:0003528!7.29e-10!29;UBERON:0001893!7.29e-10!29;UBERON:0003056!6.84e-09!49;UBERON:0000956!2.57e-07!21;UBERON:0001869!2.57e-07!21;UBERON:0000203!2.57e-07!21;UBERON:0002619!6.40e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.53e-18,73;UBERON:0001016,5.72e-18,75;UBERON:0000073,2.00e-16,54;UBERON:0004121,7.41e-16,95;UBERON:0000924,7.41e-16,95;UBERON:0006601,7.41e-16,95;UBERON:0001049,2.81e-15,52;UBERON:0005068,2.81e-15,52;UBERON:0006241,2.81e-15,52;UBERON:0007135,2.81e-15,52;UBERON:0000955,8.05e-14,47;UBERON:0006238,8.05e-14,47;UBERON:0002616,3.21e-13,46;UBERON:0002346,1.07e-12,64;UBERON:0003075,1.07e-12,64;UBERON:0007284,1.07e-12,64;UBERON:0007023,1.14e-11,51;UBERON:0010371,2.03e-11,73;UBERON:0002020,2.50e-11,34;UBERON:0003080,3.74e-11,40;UBERON:0002780,1.35e-10,39;UBERON:0001890,1.35e-10,39;UBERON:0006240,1.35e-10,39;UBERON:0003528,7.29e-10,29;UBERON:0002791,7.29e-10,29;UBERON:0001893,7.29e-10,29;UBERON:0003056,6.84e-09,49;UBERON:0000956,2.57e-07,21;UBERON:0001869,2.57e-07,21;UBERON:0000203,2.57e-07,21;UBERON:0002619,6.40e-07,17|phase1_expression=44.2010818009231,141.335040093941,148.329752040989,139.133537201142,134.740951355567,69.8377771153462,72.887143865804,48.8086162609158,27.3130120974233,34.641549895655,20.7173741552861,26.085495991475,50.1618138698433,54.2880699021974,39.6400616560639,35.8381223279992,43.3728364439451,50.6316775399971,51.8292559029693,40.7414065726109,91.1664070419468,41.9007814067736,28.470777016144,50.7175980255099,50.4700418347774,91.8771142584032,75.8141113239972,65.5032547365103,53.3965808672411,51.9182067305457,40.5766834499208,55.2476685909879,71.9625801473947,95.0890086092632,32.0625297923915,30.4209401006041,34.300451852078,65.2909343949576,41.4107732597614,49.7347556775108,72.3524730278148,56.0097297665925,47.5800145970531,123.25298479809,112.933901378539,103.887461723512,72.7623950243676,59.3028425354815,67.2239719167484,74.4666513454505,77.6924640020762,67.5637052515366,41.2745210902031,48.5992635147601,51.0862574696545,84.3810950197906,89.1118998209533,72.7097650111194,79.7126855786815,71.4137822017244,81.1304196487909,69.1242845421029,78.2579420577803,74.6916765343561,116.686230782903,98.7567359775079,66.2116244245674,51.8694712184099,58.2735621173644,69.6630641791524,57.6290394102787,78.2683697266422,75.3161724645002,55.978295241234,62.2995561618536,89.164222301172,106.812404569407,96.5316275924019,96.6185094181771,83.3521338454825,77.1240835568313,71.8860451368329,98.8307816464889,79.9122906244986,87.0950012327818,81.9067467616796,73.4637872923371,81.0837589340058,55.5830259065571,51.9932333534684,76.2343605285413,36.9982267101996,45.5580793584193,58.8276478885221,51.3323369783659,41.6665005000522,56.037323632569,88.453337418012,70.9215792565832,68.9012170295163,34.5066378452867,80.8456807710202,50.9610479413291,35.5533351576666,32.0406740696597,41.044298206966,36.9032844860792,47.5004939631289,54.8948313332004,73.9241852542827,39.2076838491467,53.2814587046247,51.427255888101,41.4487261519712,50.210377946946,43.8576403740567,91.9565279971871,72.5888771737957,51.3074120130927,42.0593809863264,46.8184019136034,44.1236480353052,76.4206220994301,130.58023546715,100.953312684085,75.1043742313259,28.3961845079031,22.1964010467561,26.6847476853436,108.148841650282,102.937635634191,63.958065225448,106.032835317289,81.5732308883754,112.413332106722,82.9052854276242,46.3369105518939,54.9878810096611,80.6185599403422,97.8554629872104,41.3783008621398,39.5431619625573,46.8161537493908,41.2931200869859,54.361162821911,54.7045585616309,53.5973864481649,88.9939595342214,51.3051823180164,56.9209301305136,51.729630504201,52.1685843177628,54.7753080974428,63.0336421405121,60.2941659675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| ||
|EntrezGene=11776 | |||
|HGNC= | |||
|MCL_coexpression_id=1920 | |||
|UniProt=O54774 | |||
|association_with_transcript=-11bp_to_ENSMUST00000020420,NM_007460,uc007gek.1_5end | |||
|description=CAGE_peak_1_at_Ap3d1_5end | |||
|id=chr10:80204967..80205025,- | |||
|ontology_enrichment_celltype=CL:0000393!4.43e-09!39;CL:0000211!4.43e-09!39;CL:0000055!6.64e-09!50;CL:0002319!3.19e-07!43;CL:0000117!4.12e-07!23;CL:0000337!4.12e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.43e-09,39;CL:0000211,4.43e-09,39;CL:0002319,3.19e-07,43;CL:0000117,4.12e-07,23;CL:0000337,4.12e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.53e-18!73;UBERON:0005743!2.53e-18!73;UBERON:0000073!5.72e-18!75;UBERON:0001016!5.72e-18!75;UBERON:0000955!1.97e-15!50;UBERON:0006238!1.97e-15!50;UBERON:0001049!2.81e-15!52;UBERON:0005068!2.81e-15!52;UBERON:0006241!2.81e-15!52;UBERON:0007135!2.81e-15!52;UBERON:0002616!8.19e-15!49;UBERON:0004121!7.38e-14!102;UBERON:0000924!7.38e-14!102;UBERON:0006601!7.38e-14!102;UBERON:0007023!1.14e-11!51;UBERON:0000033!1.25e-11!63;UBERON:0002020!2.50e-11!34;UBERON:0003080!3.74e-11!40;UBERON:0002780!1.35e-10!39;UBERON:0001890!1.35e-10!39;UBERON:0006240!1.35e-10!39;UBERON:0002346!1.67e-10!71;UBERON:0003075!1.67e-10!71;UBERON:0007284!1.67e-10!71;UBERON:0002791!7.29e-10!29;UBERON:0003528!7.29e-10!29;UBERON:0001893!7.29e-10!29;UBERON:0003056!6.84e-09!49;UBERON:0000956!2.57e-07!21;UBERON:0001869!2.57e-07!21;UBERON:0000203!2.57e-07!21;UBERON:0002619!6.40e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.53e-18,73;UBERON:0001016,5.72e-18,75;UBERON:0000073,2.00e-16,54;UBERON:0004121,7.41e-16,95;UBERON:0000924,7.41e-16,95;UBERON:0006601,7.41e-16,95;UBERON:0001049,2.81e-15,52;UBERON:0005068,2.81e-15,52;UBERON:0006241,2.81e-15,52;UBERON:0007135,2.81e-15,52;UBERON:0000955,8.05e-14,47;UBERON:0006238,8.05e-14,47;UBERON:0002616,3.21e-13,46;UBERON:0002346,1.07e-12,64;UBERON:0003075,1.07e-12,64;UBERON:0007284,1.07e-12,64;UBERON:0007023,1.14e-11,51;UBERON:0010371,2.03e-11,73;UBERON:0002020,2.50e-11,34;UBERON:0003080,3.74e-11,40;UBERON:0002780,1.35e-10,39;UBERON:0001890,1.35e-10,39;UBERON:0006240,1.35e-10,39;UBERON:0003528,7.29e-10,29;UBERON:0002791,7.29e-10,29;UBERON:0001893,7.29e-10,29;UBERON:0003056,6.84e-09,49;UBERON:0000956,2.57e-07,21;UBERON:0001869,2.57e-07,21;UBERON:0000203,2.57e-07,21;UBERON:0002619,6.40e-07,17 | |||
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| |||
|short_description=p1@Ap3d1 | |||
}} |
Revision as of 17:38, 12 September 2013
Short description: | p1@Ap3d1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ap3d1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1920 |
Association with transcript: | -11bp_to_ENSMUST00000020420, NM_007460, uc007gek.1_5end |
EntrezGene: | Ap3d1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.43e-09 | 39 |
electrically active cell | 4.43e-09 | 39 |
neural cell | 3.19e-07 | 43 |
CNS neuron (sensu Vertebrata) | 4.12e-07 | 23 |
neuroblast (sensu Vertebrata) | 4.12e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.53e-18 | 73 |
nervous system | 5.72e-18 | 75 |
regional part of nervous system | 2.00e-16 | 54 |
ectoderm-derived structure | 7.41e-16 | 95 |
ectoderm | 7.41e-16 | 95 |
presumptive ectoderm | 7.41e-16 | 95 |
neural tube | 2.81e-15 | 52 |
neural rod | 2.81e-15 | 52 |
future spinal cord | 2.81e-15 | 52 |
neural keel | 2.81e-15 | 52 |
brain | 8.05e-14 | 47 |
future brain | 8.05e-14 | 47 |
regional part of brain | 3.21e-13 | 46 |
neurectoderm | 1.07e-12 | 64 |
neural plate | 1.07e-12 | 64 |
presumptive neural plate | 1.07e-12 | 64 |
adult organism | 1.14e-11 | 51 |
ecto-epithelium | 2.03e-11 | 73 |
gray matter | 2.50e-11 | 34 |
anterior neural tube | 3.74e-11 | 40 |
regional part of forebrain | 1.35e-10 | 39 |
forebrain | 1.35e-10 | 39 |
future forebrain | 1.35e-10 | 39 |
brain grey matter | 7.29e-10 | 29 |
regional part of telencephalon | 7.29e-10 | 29 |
telencephalon | 7.29e-10 | 29 |
pre-chordal neural plate | 6.84e-09 | 49 |
cerebral cortex | 2.57e-07 | 21 |
cerebral hemisphere | 2.57e-07 | 21 |
pallium | 2.57e-07 | 21 |
regional part of cerebral cortex | 6.40e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.