FFCP PHASE1:Mm9::chr4:97444339..97444350,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18027|HGNC=|UniProt=F8WIY8|association_with_transcript=3bp_to_ENSMUST00000107061_5end|description=CAGE_peak_14_at_Nfia_5end|id=chr4:97444339..97444350,+|ontology_enrichment_celltype=CL:0002319!1.09e-11!43;CL:0000221!1.77e-11!44;CL:0000133!1.77e-11!44;CL:0000055!6.50e-11!50;CL:0000540!5.90e-10!33;CL:0000047!5.90e-10!33;CL:0000031!5.90e-10!33;CL:0000404!5.90e-10!33;CL:0000393!7.16e-10!39;CL:0000211!7.16e-10!39;CL:0000117!9.80e-08!23;CL:0000337!9.80e-08!23|ontology_enrichment_celltype_v019_2=CL:0002319,5.52e-13,43;CL:0000221,2.18e-12,44;CL:0000133,2.18e-12,44;CL:0000540,1.01e-10,33;CL:0000047,1.01e-10,33;CL:0000031,1.01e-10,33;CL:0000404,1.01e-10,33;CL:0000393,4.74e-10,39;CL:0000211,4.74e-10,39;CL:0000117,2.23e-08,23;CL:0000337,2.23e-08,23;CL:0002321,7.96e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.31e-19!73;UBERON:0005743!1.31e-19!73;UBERON:0000073!3.05e-18!75;UBERON:0001016!3.05e-18!75;UBERON:0004121!6.01e-17!102;UBERON:0000924!6.01e-17!102;UBERON:0006601!6.01e-17!102;UBERON:0001049!3.58e-13!52;UBERON:0005068!3.58e-13!52;UBERON:0006241!3.58e-13!52;UBERON:0007135!3.58e-13!52;UBERON:0000955!1.53e-12!50;UBERON:0006238!1.53e-12!50;UBERON:0002616!2.36e-12!49;UBERON:0000033!2.37e-12!63;UBERON:0002346!5.56e-12!71;UBERON:0003075!5.56e-12!71;UBERON:0007284!5.56e-12!71;UBERON:0000025!2.63e-10!114;UBERON:0004111!3.37e-10!122;UBERON:0002020!6.89e-10!34;UBERON:0000468!1.78e-09!333;UBERON:0003080!6.09e-09!40;UBERON:0003056!7.69e-09!49;UBERON:0000956!9.29e-09!21;UBERON:0001869!9.29e-09!21;UBERON:0000203!9.29e-09!21;UBERON:0002780!9.98e-09!39;UBERON:0001890!9.98e-09!39;UBERON:0006240!9.98e-09!39;UBERON:0002791!1.67e-08!29;UBERON:0003528!1.67e-08!29;UBERON:0001893!1.67e-08!29;UBERON:0000922!1.20e-07!328;UBERON:0000153!2.31e-07!94;UBERON:0002619!4.84e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.22e-21,73;UBERON:0001016,1.19e-19,75;UBERON:0004121,1.41e-17,95;UBERON:0000924,1.41e-17,95;UBERON:0006601,1.41e-17,95;UBERON:0000073,1.31e-14,54;UBERON:0001049,9.06e-14,52;UBERON:0005068,9.06e-14,52;UBERON:0006241,9.06e-14,52;UBERON:0007135,9.06e-14,52;UBERON:0010371,8.93e-13,73;UBERON:0002346,1.40e-12,64;UBERON:0003075,1.40e-12,64;UBERON:0007284,1.40e-12,64;UBERON:0000955,8.23e-12,47;UBERON:0006238,8.23e-12,47;UBERON:0002616,1.42e-11,46;UBERON:0010314,6.72e-11,92;UBERON:0002020,1.41e-10,34;UBERON:0000956,1.39e-09,21;UBERON:0001869,1.39e-09,21;UBERON:0000203,1.39e-09,21;UBERON:0003080,2.88e-09,40;UBERON:0003528,3.73e-09,29;UBERON:0002791,3.73e-09,29;UBERON:0001893,3.73e-09,29;UBERON:0002780,5.36e-09,39;UBERON:0001890,5.36e-09,39;UBERON:0006240,5.36e-09,39;UBERON:0002619,5.35e-08,17;UBERON:0003056,6.71e-08,49;UBERON:0000025,9.66e-08,114;UBERON:0004111,7.90e-07,122|phase1_expression=1.12104192973356,0,0,0.30246421130683,0,0.16787927191189,0,0,0,0,0,0,0,0,0.999329285446988,0.607425802169478,0.699561878128147,0,0,0,0.850432901510698,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.506884656097573,0.734187008646726,0.782391344348039,1.74420125104357,2.41654801007919,1.94429899074283,2.51975558925653,1.43752564364972,0,0,0,1.02903774414379,1.71920063963254,2.06268836910977,0.809265843438391,1.05798195854407,1.26766280701236,0.677689064138264,0.889294796111139,0,0,0,2.39680088414724,5.37905627450176,8.08778976006126,6.21027316325777,6.09942387919008,3.71346279724945,0.662605622854841,1.95985278743926,1.72521847832825,1.83843757322004,2.20231761998777,1.27687338085188,2.76491759861238,0.659431438650969,1.37231465403614,1.04182674111352,2.51264699101243,1.12552522006336,1.98637722109853,1.47314292736834,1.85083185038834,1.67759501242771,0.151452386666368,0.0755715601067855,2.31891590961342,0,0.679971333707751,0,1.29955283489534,0.448026887097336,0.842666520790511,0.170430322578058,0.519572009205738,0,0.704217098883403,0,0,7.11066703153331,0.432982082022428,0,0,0.91347103775248,1.03575153458869,0.445326417194474,0.346970653532272,0.304465478312141,0.230615497256059,0.904335843315735,0.705532242814229,1.38233250462643,0,1.44599356919912,0.884610551949874,0.485300549842228,0.441683036920787,0.484875253135222,0,9.36898550436951,11.7290155815535,0.255457055208591,0,0,0,1.3481157546434,0,0.753926112677186,0.869121600961382,1.02286182932132,1.66230435647648,0.811206315338788,0.712875546952214,0.248813941220186,0.505445516867349,3.99839526184301,0.650602214813519,0.459804208866946,0.540186389416048,1.05493372485001,0.95251098811859,0.768682321709099,0.562210347358373,2.06962696591213,0.646703978798527,1.89106080167819,2.81521798662318,1.53437012699302,2.22437799380478,1.39300866608867,2.05782136407943,1.59227413454795,0,0,0,0.828503090142008,1.17263029990548,1.08037236876609,0.946978942340841,0.590292695242212,1.3884040159864,0.930135779001631,0.268273401399619,0.817357396570186,1.81015834904829,0.985004784474571,1.37816976227955,1.31579988682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| ||
|EntrezGene=18027 | |||
|HGNC= | |||
|UniProt=F8WIY8 | |||
|association_with_transcript=3bp_to_ENSMUST00000107061_5end | |||
|description=CAGE_peak_14_at_Nfia_5end | |||
|id=chr4:97444339..97444350,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.09e-11!43;CL:0000221!1.77e-11!44;CL:0000133!1.77e-11!44;CL:0000055!6.50e-11!50;CL:0000540!5.90e-10!33;CL:0000047!5.90e-10!33;CL:0000031!5.90e-10!33;CL:0000404!5.90e-10!33;CL:0000393!7.16e-10!39;CL:0000211!7.16e-10!39;CL:0000117!9.80e-08!23;CL:0000337!9.80e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.52e-13,43;CL:0000221,2.18e-12,44;CL:0000133,2.18e-12,44;CL:0000540,1.01e-10,33;CL:0000047,1.01e-10,33;CL:0000031,1.01e-10,33;CL:0000404,1.01e-10,33;CL:0000393,4.74e-10,39;CL:0000211,4.74e-10,39;CL:0000117,2.23e-08,23;CL:0000337,2.23e-08,23;CL:0002321,7.96e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.31e-19!73;UBERON:0005743!1.31e-19!73;UBERON:0000073!3.05e-18!75;UBERON:0001016!3.05e-18!75;UBERON:0004121!6.01e-17!102;UBERON:0000924!6.01e-17!102;UBERON:0006601!6.01e-17!102;UBERON:0001049!3.58e-13!52;UBERON:0005068!3.58e-13!52;UBERON:0006241!3.58e-13!52;UBERON:0007135!3.58e-13!52;UBERON:0000955!1.53e-12!50;UBERON:0006238!1.53e-12!50;UBERON:0002616!2.36e-12!49;UBERON:0000033!2.37e-12!63;UBERON:0002346!5.56e-12!71;UBERON:0003075!5.56e-12!71;UBERON:0007284!5.56e-12!71;UBERON:0000025!2.63e-10!114;UBERON:0004111!3.37e-10!122;UBERON:0002020!6.89e-10!34;UBERON:0000468!1.78e-09!333;UBERON:0003080!6.09e-09!40;UBERON:0003056!7.69e-09!49;UBERON:0000956!9.29e-09!21;UBERON:0001869!9.29e-09!21;UBERON:0000203!9.29e-09!21;UBERON:0002780!9.98e-09!39;UBERON:0001890!9.98e-09!39;UBERON:0006240!9.98e-09!39;UBERON:0002791!1.67e-08!29;UBERON:0003528!1.67e-08!29;UBERON:0001893!1.67e-08!29;UBERON:0000922!1.20e-07!328;UBERON:0000153!2.31e-07!94;UBERON:0002619!4.84e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.22e-21,73;UBERON:0001016,1.19e-19,75;UBERON:0004121,1.41e-17,95;UBERON:0000924,1.41e-17,95;UBERON:0006601,1.41e-17,95;UBERON:0000073,1.31e-14,54;UBERON:0001049,9.06e-14,52;UBERON:0005068,9.06e-14,52;UBERON:0006241,9.06e-14,52;UBERON:0007135,9.06e-14,52;UBERON:0010371,8.93e-13,73;UBERON:0002346,1.40e-12,64;UBERON:0003075,1.40e-12,64;UBERON:0007284,1.40e-12,64;UBERON:0000955,8.23e-12,47;UBERON:0006238,8.23e-12,47;UBERON:0002616,1.42e-11,46;UBERON:0010314,6.72e-11,92;UBERON:0002020,1.41e-10,34;UBERON:0000956,1.39e-09,21;UBERON:0001869,1.39e-09,21;UBERON:0000203,1.39e-09,21;UBERON:0003080,2.88e-09,40;UBERON:0003528,3.73e-09,29;UBERON:0002791,3.73e-09,29;UBERON:0001893,3.73e-09,29;UBERON:0002780,5.36e-09,39;UBERON:0001890,5.36e-09,39;UBERON:0006240,5.36e-09,39;UBERON:0002619,5.35e-08,17;UBERON:0003056,6.71e-08,49;UBERON:0000025,9.66e-08,114;UBERON:0004111,7.90e-07,122 | |||
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| |||
|short_description=p14@Nfia | |||
}} |
Revision as of 05:39, 14 September 2013
Short description: | p14@Nfia |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_Nfia_5end |
Coexpression cluster: | NA |
Association with transcript: | 3bp_to_ENSMUST00000107061_5end |
EntrezGene: | Nfia |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.52e-13 | 43 |
ectodermal cell | 2.18e-12 | 44 |
neurectodermal cell | 2.18e-12 | 44 |
neuron | 1.01e-10 | 33 |
neuronal stem cell | 1.01e-10 | 33 |
neuroblast | 1.01e-10 | 33 |
electrically signaling cell | 1.01e-10 | 33 |
electrically responsive cell | 4.74e-10 | 39 |
electrically active cell | 4.74e-10 | 39 |
CNS neuron (sensu Vertebrata) | 2.23e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.23e-08 | 23 |
embryonic cell | 7.96e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.22e-21 | 73 |
nervous system | 1.19e-19 | 75 |
ectoderm-derived structure | 1.41e-17 | 95 |
ectoderm | 1.41e-17 | 95 |
presumptive ectoderm | 1.41e-17 | 95 |
regional part of nervous system | 1.31e-14 | 54 |
neural tube | 9.06e-14 | 52 |
neural rod | 9.06e-14 | 52 |
future spinal cord | 9.06e-14 | 52 |
neural keel | 9.06e-14 | 52 |
ecto-epithelium | 8.93e-13 | 73 |
neurectoderm | 1.40e-12 | 64 |
neural plate | 1.40e-12 | 64 |
presumptive neural plate | 1.40e-12 | 64 |
brain | 8.23e-12 | 47 |
future brain | 8.23e-12 | 47 |
regional part of brain | 1.42e-11 | 46 |
structure with developmental contribution from neural crest | 6.72e-11 | 92 |
gray matter | 1.41e-10 | 34 |
cerebral cortex | 1.39e-09 | 21 |
cerebral hemisphere | 1.39e-09 | 21 |
pallium | 1.39e-09 | 21 |
anterior neural tube | 2.88e-09 | 40 |
brain grey matter | 3.73e-09 | 29 |
regional part of telencephalon | 3.73e-09 | 29 |
telencephalon | 3.73e-09 | 29 |
regional part of forebrain | 5.36e-09 | 39 |
forebrain | 5.36e-09 | 39 |
future forebrain | 5.36e-09 | 39 |
regional part of cerebral cortex | 5.35e-08 | 17 |
pre-chordal neural plate | 6.71e-08 | 49 |
tube | 9.66e-08 | 114 |
anatomical conduit | 7.90e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.