FFCP PHASE1:Hg19::chr17:36715685..36715749,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset=robustDPI | |||
|EntrezGene=80725 | |EntrezGene=80725 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29506 | |HGNC=29506 | ||
|TSSclassifier=W | |||
|UniProt=Q9C0H9 | |UniProt=Q9C0H9 | ||
|association_with_transcript=0bp_to_uc002hqg.2_5end | |association_with_transcript=0bp_to_uc002hqg.2_5end | ||
Revision as of 10:35, 8 July 2013
| Short description: | p3@SRCIN1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_SRCIN1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_uc002hqg.2_5end |
| EntrezGene: | SRCIN1 |
| HGNC: | 29506 |
| UniProt: | Q9C0H9 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@SRCIN1 |
|---|
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 4.80e-21 | 253 |
| epithelial cell of lung | 2.33e-10 | 19 |
| endodermal cell | 3.97e-08 | 58 |
| Ontology term | p-value | n |
|---|---|---|
| respiratory primordium | 4.13e-13 | 38 |
| endoderm of foregut | 4.13e-13 | 38 |
| foregut | 5.23e-11 | 87 |
| lung | 1.18e-10 | 22 |
| respiratory tube | 1.18e-10 | 22 |
| respiration organ | 1.18e-10 | 22 |
| pair of lungs | 1.18e-10 | 22 |
| lung primordium | 1.18e-10 | 22 |
| lung bud | 1.18e-10 | 22 |
| respiratory tract epithelium | 2.33e-10 | 19 |
| Ontology term | p-value | n |
|---|---|---|
| cell type cancer | 5.77e-41 | 143 |
| cancer | 3.36e-36 | 235 |
| disease of cellular proliferation | 1.25e-34 | 239 |
| carcinoma | 2.86e-33 | 106 |
| respiratory system cancer | 5.59e-12 | 16 |
| lung cancer | 4.37e-11 | 15 |
| organ system cancer | 1.00e-10 | 137 |
| squamous cell carcinoma | 1.31e-10 | 14 |
| gastrointestinal system cancer | 1.42e-07 | 14 |
| lung carcinoma | 2.83e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
