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MCL coexpression mm9:1284: Difference between revisions

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{{MCL_coexpression_mm9
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fraction;0.000320721918700239;13405,13346!GO:0005605;basal lamina;0.000633274535833115;13405,12495!GO:0042383;sarcolemma;0.000633274535833115;13405,13346!GO:0030018;Z disc;0.000633274535833115;13405,13346!GO:0031674;I band;0.000653173538217342;13405,13346!GO:0005604;basement membrane;0.00169525293364805;13405,12495!GO:0030017;sarcomere;0.00169525293364805;13405,13346!GO:0044449;contractile fiber part;0.00169525293364805;13405,13346!GO:0030016;myofibril;0.00169525293364805;13405,13346!GO:0043292;contractile fiber;0.00169525293364805;13405,13346!GO:0005886;plasma membrane;0.00169525293364805;16533,13405,12495,13346!GO:0044420;extracellular matrix part;0.00202213373248082;13405,12495!GO:0006200;ATP catabolic process;0.00507115656574754;12495!GO:0009207;purine ribonucleoside triphosphate catabolic process;0.00507115656574754;12495!GO:0007517;muscle development;0.00526387084088259;13405,13346!GO:0009137;purine nucleoside diphosphate catabolic process;0.00591586310026468;12495!GO:0009181;purine ribonucleoside diphosphate catabolic process;0.00591586310026468;12495!GO:0009203;ribonucleoside triphosphate catabolic process;0.00591586310026468;12495!GO:0009146;purine nucleoside triphosphate catabolic process;0.00676043075353872;12495!GO:0009179;purine ribonucleoside diphosphate metabolic process;0.00676043075353872;12495!GO:0009135;purine nucleoside diphosphate metabolic process;0.00676043075353872;12495!GO:0009154;purine ribonucleotide catabolic process;0.00771507489645553;12495!GO:0009191;ribonucleoside diphosphate catabolic process;0.00771507489645553;12495!GO:0009143;nucleoside triphosphate catabolic process;0.00788587284542905;12495!GO:0009185;ribonucleoside diphosphate metabolic process;0.00788587284542905;12495!GO:0045213;neurotransmitter receptor metabolic process;0.00788587284542905;13405!GO:0009134;nucleoside diphosphate catabolic process;0.00788587284542905;12495!GO:0005578;proteinaceous extracellular matrix;0.00791926210191326;13405,12495!GO:0006195;purine nucleotide catabolic process;0.00827948596959745;12495!GO:0009261;ribonucleotide catabolic process;0.00827948596959745;12495!GO:0046716;muscle maintenance;0.0102999713008809;13405!GO:0017110;nucleoside-diphosphatase activity;0.0110858634557424;12495!GO:0030168;platelet activation;0.0114761859250077;12495!GO:0015269;calcium-activated potassium channel activity;0.0114761859250077;16533!GO:0016010;dystrophin-associated glycoprotein complex;0.0121607766733126;13405!GO:0022839;ion gated channel activity;0.0124610329072939;16533!GO:0009132;nucleoside diphosphate metabolic process;0.0124610329072939;12495!GO:0005227;calcium activated cation channel activity;0.0130653532658187;16533!GO:0000267;cell fraction;0.0177110898669781;13405,13346!GO:0009166;nucleotide catabolic process;0.0194918841001994;12495!GO:0043112;receptor metabolic process;0.0216042991580266;13405!GO:0065008;regulation of biological 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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007100!3.42e-10!18;UBERON:0000948!3.42e-10!18;UBERON:0005498!3.42e-10!18;UBERON:0004140!3.42e-10!18;UBERON:0009881!3.42e-10!18;UBERON:0004141!3.42e-10!18;UBERON:0003084!3.42e-10!18;UBERON:0007005!3.42e-10!18;UBERON:0004139!3.42e-10!18;UBERON:0004291!3.42e-10!18;UBERON:0004535!4.56e-09!23;UBERON:0001009!4.56e-09!23;UBERON:0005153!1.22e-08!17;UBERON:0003103!4.56e-08!43;UBERON:0004872!7.54e-08!33;UBERON:0002048!8.54e-07!14;UBERON:0000117!8.54e-07!14;UBERON:0000171!8.54e-07!14;UBERON:0000170!8.54e-07!14;UBERON:0005597!8.54e-07!14;UBERON:0000118!8.54e-07!14
|tfbs_overrepresentation_for_novel_motifs=0.491922,0.0600685,0.464605,0.535892,0.346849,0.550971,0.645383,0.247459,0.257202,1.00112,0.599767,0.632897,0.247704,0.6581,0.364314,0,0.856992,0.338549,0.232269,0.442204,0.426133,1.17476,0.657163,1.63467,0.472505,0.686615,0.223823,0.572827,0.394364,0.534301,0.558142,0.960397,0.336199,0.589948,0.364821,0.0363535,0.326478,0.629145,0.303703,0.27383,0.342638,0.56353,0.327433,0.366415,0.161543,0.524258,0.77511,0.589246,0.284064,0.397446,0.839084,0.714419,0.174327,1.10437,1.12205,0.66551,0.406788,0.619643,0.614918,0.663395,0.939962,0.724164,0.269393,0.827522,0.677043,0.869046,1.2599,1.61148,0.935192,1.46355,0.444872,0.70565,0.740068,1.156,0.599223,0.19692,1.11463,0.763395,0.922432,0.430551,0.708505,0.874787,0.722675,0.240896,1.03903,0.0539203,0.479018,0.534643,0.780154,1.77427,1.33021,1.04409,0.973447,0.35304,2.2472,0.769162,0.685716,0.976308,0.775372,0.160254,0.326561,0.960112,1.08669,0.839694,0.838613,0.563071,0.8998,0.585058,0.435642,0.428007,0.484547,1.0885,1.10269,0.605144,1.33732,0.340765,0.0704207,0.53982,0.858327,0.862623,1.16147,0.805995,0.688501,0.762461,1.39185,0.926209,1.5739,0.966541,1.25836,0.356163,1.06946,0.52828,1.2285,0.679647,1.35909,0.347287,1.25097,0.564999,1.30952,2.14327,1.74232,1.26465,0.700956,0.971067,0.831964,0.564002,0.778321,2.10357,0.503174,0.348692,0.183562,0.0987301,1.10596,0.287383,0.678689,1.18867,0.71546,0.983048,0.48935,0.500417,1.31911,1.03816,0.926663,0.482185,0.82857,0.671017,0.325308,0.63125,0.0323861
|tfbs_overrepresentation_jaspar=MA0003.1;0.00973143,MA0004.1;0.536396,MA0006.1;0.359699,MA0007.1;0.52077,MA0009.1;0.987341,MA0014.1;0.304529,MA0017.1;1.00628,MA0019.1;0.800946,MA0024.1;0.942716,MA0025.1;1.22395,MA0027.1;2.64231,MA0028.1;0.370592,MA0029.1;0.920529,MA0030.1;0.927235,MA0031.1;0.890871,MA0038.1;0.686534,MA0040.1;1.00009,MA0041.1;1.15799,MA0042.1;1.12834,MA0043.1;1.08567,MA0046.1;1.02391,MA0048.1;1.50576,MA0050.1;0.57678,MA0051.1;0.695779,MA0052.1;1.00829,MA0055.1;0.807132,MA0056.1;0,MA0057.1;0.149949,MA0058.1;0.436487,MA0059.1;0.449345,MA0060.1;0.275911,MA0061.1;0.307097,MA0063.1;0,MA0066.1;1.61836,MA0067.1;1.33603,MA0068.1;0.911705,MA0069.1;1.00864,MA0070.1;0.998765,MA0071.1;0.575909,MA0072.1;0.990133,MA0073.1;4.53692,MA0074.1;0.638014,MA0076.1;0.407465,MA0077.1;0.968053,MA0078.1;0.729877,MA0081.1;0.473489,MA0083.1;2.45852,MA0084.1;1.66561,MA0087.1;1.04109,MA0088.1;0.358337,MA0089.1;0,MA0090.1;0.500693,MA0091.1;2.32562,MA0092.1;0.501022,MA0093.1;0.379257,MA0095.1;0,MA0098.1;0,MA0100.1;0.626021,MA0101.1;0.458688,MA0103.1;0.398766,MA0105.1;0.199622,MA0106.1;0.737893,MA0107.1;0.392331,MA0108.2;0.824407,MA0109.1;0,MA0111.1;0.515457,MA0113.1;0.708789,MA0114.1;0.822296,MA0115.1;1.08851,MA0116.1;0.359483,MA0117.1;1.05576,MA0119.1;0.459301,MA0122.1;1.07591,MA0124.1;1.28237,MA0125.1;1.20757,MA0130.1;0,MA0131.1;0.796279,MA0132.1;0,MA0133.1;0,MA0135.1;1.1226,MA0136.1;1.58388,MA0139.1;0.243463,MA0140.1;0.625902,MA0141.1;0.419361,MA0142.1;0.876028,MA0143.1;0.725672,MA0144.1;0.307873,MA0145.1;0.119202,MA0146.1;0.990842,MA0147.1;0.320675,MA0148.1;1.3627,MA0149.1;1.17328,MA0062.2;0.204999,MA0035.2;0.630778,MA0039.2;0.769467,MA0138.2;0.788113,MA0002.2;0.246463,MA0137.2;0.416331,MA0104.2;0.261255,MA0047.2;1.64036,MA0112.2;1.24549,MA0065.2;0.380324,MA0150.1;0.520653,MA0151.1;0,MA0152.1;0.685852,MA0153.1;1.13945,MA0154.1;1.49271,MA0155.1;0.414701,MA0156.1;1.84703,MA0157.1;0.843181,MA0158.1;0,MA0159.1;0.331229,MA0160.1;0.556423,MA0161.1;0,MA0162.1;0.397553,MA0163.1;0.0423021,MA0164.1;0.658997,MA0080.2;1.01893,MA0018.2;0.669032,MA0099.2;0.781628,MA0079.2;0.0520572,MA0102.2;1.7182,MA0258.1;1.4396,MA0259.1;0.309517,MA0442.1;0
}}

Latest revision as of 16:41, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:33863206..33863243,+p2@Kcnmb1
Mm9::chr11:33863281..33863297,+p1@Kcnmb1
Mm9::chr19:40735141..40735154,+p6@Entpd1
Mm9::chr19:40735165..40735184,+p5@Entpd1
Mm9::chr1:75358590..75358619,+p3@Des
Mm9::chrX:80194418..80194429,+p17@Dmd


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005626insoluble fraction0.000320721918700239
GO:0005605basal lamina0.000633274535833115
GO:0042383sarcolemma0.000633274535833115
GO:0030018Z disc0.000633274535833115
GO:0031674I band0.000653173538217342
GO:0005604basement membrane0.00169525293364805
GO:0030017sarcomere0.00169525293364805
GO:0044449contractile fiber part0.00169525293364805
GO:0030016myofibril0.00169525293364805
GO:0043292contractile fiber0.00169525293364805
GO:0005886plasma membrane0.00169525293364805
GO:0044420extracellular matrix part0.00202213373248082
GO:0006200ATP catabolic process0.00507115656574754
GO:0009207purine ribonucleoside triphosphate catabolic process0.00507115656574754
GO:0007517muscle development0.00526387084088259
GO:0009137purine nucleoside diphosphate catabolic process0.00591586310026468
GO:0009181purine ribonucleoside diphosphate catabolic process0.00591586310026468
GO:0009203ribonucleoside triphosphate catabolic process0.00591586310026468
GO:0009146purine nucleoside triphosphate catabolic process0.00676043075353872
GO:0009179purine ribonucleoside diphosphate metabolic process0.00676043075353872
GO:0009135purine nucleoside diphosphate metabolic process0.00676043075353872
GO:0009154purine ribonucleotide catabolic process0.00771507489645553
GO:0009191ribonucleoside diphosphate catabolic process0.00771507489645553
GO:0009143nucleoside triphosphate catabolic process0.00788587284542905
GO:0009185ribonucleoside diphosphate metabolic process0.00788587284542905
GO:0045213neurotransmitter receptor metabolic process0.00788587284542905
GO:0009134nucleoside diphosphate catabolic process0.00788587284542905
GO:0005578proteinaceous extracellular matrix0.00791926210191326
GO:0006195purine nucleotide catabolic process0.00827948596959745
GO:0009261ribonucleotide catabolic process0.00827948596959745
GO:0046716muscle maintenance0.0102999713008809
GO:0017110nucleoside-diphosphatase activity0.0110858634557424
GO:0030168platelet activation0.0114761859250077
GO:0015269calcium-activated potassium channel activity0.0114761859250077
GO:0016010dystrophin-associated glycoprotein complex0.0121607766733126
GO:0022839ion gated channel activity0.0124610329072939
GO:0009132nucleoside diphosphate metabolic process0.0124610329072939
GO:0005227calcium activated cation channel activity0.0130653532658187
GO:0000267cell fraction0.0177110898669781
GO:0009166nucleotide catabolic process0.0194918841001994
GO:0043112receptor metabolic process0.0216042991580266
GO:0065008regulation of biological quality0.0246739804297449
GO:0045121lipid raft0.027994529518183
GO:0030055cell-matrix junction0.0281606306010075
GO:0046034ATP metabolic process0.0314554543040692
GO:0005509calcium ion binding0.0360135941448607
GO:0009205purine ribonucleoside triphosphate metabolic process0.0360135941448607
GO:0009199ribonucleoside triphosphate metabolic process0.0360135941448607
GO:0009144purine nucleoside triphosphate metabolic process0.0360135941448607
GO:0007596blood coagulation0.0360135941448607
GO:0007599hemostasis0.0360135941448607
GO:0008076voltage-gated potassium channel complex0.0360135941448607
GO:0050817coagulation0.0360135941448607
GO:0009141nucleoside triphosphate metabolic process0.0366497842386897
GO:0005856cytoskeleton0.0366919040790318
GO:0009150purine ribonucleotide metabolic process0.0403629970653441
GO:0050878regulation of body fluid levels0.041881593998687
GO:0009259ribonucleotide metabolic process0.041881593998687
GO:0016323basolateral plasma membrane0.041881593998687
GO:0006163purine nucleotide metabolic process0.0435225948139612
GO:0042060wound healing0.0456828279462791



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primary circulatory organ3.42e-1018
heart3.42e-1018
primitive heart tube3.42e-1018
primary heart field3.42e-1018
anterior lateral plate mesoderm3.42e-1018
heart tube3.42e-1018
heart primordium3.42e-1018
cardiac mesoderm3.42e-1018
cardiogenic plate3.42e-1018
heart rudiment3.42e-1018
cardiovascular system4.56e-0923
circulatory system4.56e-0923
epithelial bud1.22e-0817
compound organ4.56e-0843
splanchnic layer of lateral plate mesoderm7.54e-0833
lung8.54e-0714
respiratory tube8.54e-0714
respiration organ8.54e-0714
pair of lungs8.54e-0714
lung primordium8.54e-0714
lung bud8.54e-0714


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00973143
MA0004.10.536396
MA0006.10.359699
MA0007.10.52077
MA0009.10.987341
MA0014.10.304529
MA0017.11.00628
MA0019.10.800946
MA0024.10.942716
MA0025.11.22395
MA0027.12.64231
MA0028.10.370592
MA0029.10.920529
MA0030.10.927235
MA0031.10.890871
MA0038.10.686534
MA0040.11.00009
MA0041.11.15799
MA0042.11.12834
MA0043.11.08567
MA0046.11.02391
MA0048.11.50576
MA0050.10.57678
MA0051.10.695779
MA0052.11.00829
MA0055.10.807132
MA0056.10
MA0057.10.149949
MA0058.10.436487
MA0059.10.449345
MA0060.10.275911
MA0061.10.307097
MA0063.10
MA0066.11.61836
MA0067.11.33603
MA0068.10.911705
MA0069.11.00864
MA0070.10.998765
MA0071.10.575909
MA0072.10.990133
MA0073.14.53692
MA0074.10.638014
MA0076.10.407465
MA0077.10.968053
MA0078.10.729877
MA0081.10.473489
MA0083.12.45852
MA0084.11.66561
MA0087.11.04109
MA0088.10.358337
MA0089.10
MA0090.10.500693
MA0091.12.32562
MA0092.10.501022
MA0093.10.379257
MA0095.10
MA0098.10
MA0100.10.626021
MA0101.10.458688
MA0103.10.398766
MA0105.10.199622
MA0106.10.737893
MA0107.10.392331
MA0108.20.824407
MA0109.10
MA0111.10.515457
MA0113.10.708789
MA0114.10.822296
MA0115.11.08851
MA0116.10.359483
MA0117.11.05576
MA0119.10.459301
MA0122.11.07591
MA0124.11.28237
MA0125.11.20757
MA0130.10
MA0131.10.796279
MA0132.10
MA0133.10
MA0135.11.1226
MA0136.11.58388
MA0139.10.243463
MA0140.10.625902
MA0141.10.419361
MA0142.10.876028
MA0143.10.725672
MA0144.10.307873
MA0145.10.119202
MA0146.10.990842
MA0147.10.320675
MA0148.11.3627
MA0149.11.17328
MA0062.20.204999
MA0035.20.630778
MA0039.20.769467
MA0138.20.788113
MA0002.20.246463
MA0137.20.416331
MA0104.20.261255
MA0047.21.64036
MA0112.21.24549
MA0065.20.380324
MA0150.10.520653
MA0151.10
MA0152.10.685852
MA0153.11.13945
MA0154.11.49271
MA0155.10.414701
MA0156.11.84703
MA0157.10.843181
MA0158.10
MA0159.10.331229
MA0160.10.556423
MA0161.10
MA0162.10.397553
MA0163.10.0423021
MA0164.10.658997
MA0080.21.01893
MA0018.20.669032
MA0099.20.781628
MA0079.20.0520572
MA0102.21.7182
MA0258.11.4396
MA0259.10.309517
MA0442.10
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