FFCP PHASE1:Hg19::chr2:55278341..55278367,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57142|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14085|TSSclassifier=N|UniProt=|association_with_transcript=-377bp_to_ENST00000404909_5end|coexpression_cluster_id=C0|description=CAGE_peak_26_at_RTN4_5end|id=chr2:55278341..55278367,-|ontology_enrichment_celltype=CL:0002057!3.02e-27!42;CL:0000860!1.72e-25!45;CL:0000557!2.94e-16!71;CL:0002009!2.76e-15!65;CL:0000766!4.64e-15!76;CL:0000839!9.50e-15!70;CL:0002194!3.20e-14!63;CL:0000576!3.20e-14!63;CL:0000040!3.20e-14!63;CL:0000559!3.20e-14!63;CL:0000548!4.09e-10!679;CL:0000004!4.09e-10!679;CL:0000255!4.09e-10!679;CL:0000012!8.81e-10!682;CL:0002371!3.84e-08!591;CL:0000144!5.32e-08!625;CL:0000763!2.33e-07!112;CL:0000049!2.33e-07!112;CL:0000048!6.07e-07!430;CL:0000723!6.95e-07!436|ontology_enrichment_celltype_v019=CL:0000860;4.03e-76;33!CL:0002057;4.03e-76;33!CL:0000473;2.36e-53;39!CL:0000234;2.36e-53;39!CL:0000576;5.63e-42;48!CL:0000766;1.30e-25;69!CL:0002087;3.55e-11;104!CL:0000763;9.24e-10;100!CL:0002393;1.28e-07;6!CL:0002397;1.28e-07;6|ontology_enrichment_celltype_v019_2=CL:0000860,2.66e-81,42;CL:0002057,2.66e-81,42;CL:0000473,2.17e-70,48;CL:0000234,2.17e-70,48;CL:0002009,2.76e-57,61;CL:0002194,4.17e-55,59;CL:0000576,4.17e-55,59;CL:0000040,4.17e-55,59;CL:0000559,4.17e-55,59;CL:0000557,1.10e-51,67;CL:0000839,1.02e-48,66;CL:0000766,3.25e-44,72;CL:0000763,6.66e-30,108;CL:0000049,6.66e-30,108;CL:0002031,2.56e-26,120;CL:0002087,1.42e-25,115;CL:0000738,1.62e-22,136;CL:0002032,4.42e-18,161;CL:0000837,4.42e-18,161;CL:0000037,4.48e-17,168;CL:0000988,6.73e-16,177;CL:0000134,2.02e-08,354;CL:0002320,4.00e-08,361;CL:0000048,8.01e-08,427;CL:0000723,1.30e-07,433;CL:0000034,2.44e-07,441;CL:0000219,4.45e-07,386|ontology_enrichment_development_v019=CL:0002057;1.16e-58;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!4.87e-16!80;UBERON:0001474!2.36e-14!86;UBERON:0004765!8.62e-11!101;UBERON:0001434!8.62e-11!101;UBERON:0002390!2.68e-10!102;UBERON:0003061!2.68e-10!102;UBERON:0002405!1.02e-09!115;UBERON:0002193!1.35e-09!112;UBERON:0003081!1.58e-09!216;UBERON:0002204!7.18e-09!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.77e-48,76;UBERON:0001474,1.63e-44,82;UBERON:0004765,4.86e-40,90;UBERON:0002405,1.47e-38,93;UBERON:0002390,2.74e-36,98;UBERON:0003061,2.74e-36,98;UBERON:0001434,1.92e-35,100;UBERON:0002193,2.25e-32,108;UBERON:0003081,1.74e-24,203;UBERON:0002204,1.14e-23,167;UBERON:0000926,3.28e-13,315;UBERON:0004120,3.28e-13,315;UBERON:0006603,3.28e-13,315;UBERON:0002384,1.02e-07,371|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0.730310090387373,0.975865597581014,0,0,0,0,0,0.125542639594803,0,0,0,0.786728553697808,0.383829398097213,0.309632246632152,0,0.90361775633475,0.369754010166788,0,0,0.293600439334847,1.10799081706375,1.60435557976113,1.51907609501096,0,0,0,0.290796477559129,0.377875943688809,0.970336244751265,1.62700325833979,1.23350366406548,4.33588919253145,4.60307827715441,3.07392847834921,5.67557351732605,9.65287906062532,7.10033151942209,5.41705946377367,2.44715041405386,0.818718450173537,2.47195832889593,7.03992952453076,1.60464513538047,10.2293940127847,0.659702600373432,0.997318288108159,1.70489900213078,5.22376629531451,2.26954089876456,6.22822248995575,7.5374599577023,3.65038042894141,6.5156653411535,4.23779651843358,4.78760926783834,2.53169909952708,0.211255286311942,0.212604299965044,0,0,0.300353785683013,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.79504962946682,0,1.38856200643038,0,0.838998872419812,0.550236083880135,0,0,0,0.33472061276467,0,0,0.24406205754817,0.735326160691737,0,0,0.22452937262617,0.112611480483322,0,1.89853131913626,0.183201743930407,0,0,0,0,0.12663051166458,3.31022952033047,0.286836620748814,0.354668382198357,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0.234321431833797,0,0,0,0.23486899728753,0.485618833104395,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.358779271377724,0,0,0.300091096084402,0,0,0,0.675105328965065,0.0974370051611986,0.504867548488229,0.184099797284599,0,0.710019185033229,0.403008392910561,0.169560592310488,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474541238222193,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0.100528972411631,0,0.325808305310325,1.03993478527958,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.985326475791887,0,0.414656231081544,0.144119953416961,0.25248486685276,0.063497894292169,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0.257207374262142,2.83698264046557,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57142 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-377bp_to_ENST00000404909_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_26_at_RTN4_5end | |||
|id=chr2:55278341..55278367,- | |||
|ontology_enrichment_celltype=CL:0002057!3.02e-27!42;CL:0000860!1.72e-25!45;CL:0000557!2.94e-16!71;CL:0002009!2.76e-15!65;CL:0000766!4.64e-15!76;CL:0000839!9.50e-15!70;CL:0002194!3.20e-14!63;CL:0000576!3.20e-14!63;CL:0000040!3.20e-14!63;CL:0000559!3.20e-14!63;CL:0000548!4.09e-10!679;CL:0000004!4.09e-10!679;CL:0000255!4.09e-10!679;CL:0000012!8.81e-10!682;CL:0002371!3.84e-08!591;CL:0000144!5.32e-08!625;CL:0000763!2.33e-07!112;CL:0000049!2.33e-07!112;CL:0000048!6.07e-07!430;CL:0000723!6.95e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.03e-76;33!CL:0002057;4.03e-76;33!CL:0000473;2.36e-53;39!CL:0000234;2.36e-53;39!CL:0000576;5.63e-42;48!CL:0000766;1.30e-25;69!CL:0002087;3.55e-11;104!CL:0000763;9.24e-10;100!CL:0002393;1.28e-07;6!CL:0002397;1.28e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.66e-81,42;CL:0002057,2.66e-81,42;CL:0000473,2.17e-70,48;CL:0000234,2.17e-70,48;CL:0002009,2.76e-57,61;CL:0002194,4.17e-55,59;CL:0000576,4.17e-55,59;CL:0000040,4.17e-55,59;CL:0000559,4.17e-55,59;CL:0000557,1.10e-51,67;CL:0000839,1.02e-48,66;CL:0000766,3.25e-44,72;CL:0000763,6.66e-30,108;CL:0000049,6.66e-30,108;CL:0002031,2.56e-26,120;CL:0002087,1.42e-25,115;CL:0000738,1.62e-22,136;CL:0002032,4.42e-18,161;CL:0000837,4.42e-18,161;CL:0000037,4.48e-17,168;CL:0000988,6.73e-16,177;CL:0000134,2.02e-08,354;CL:0002320,4.00e-08,361;CL:0000048,8.01e-08,427;CL:0000723,1.30e-07,433;CL:0000034,2.44e-07,441;CL:0000219,4.45e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.16e-58;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.87e-16!80;UBERON:0001474!2.36e-14!86;UBERON:0004765!8.62e-11!101;UBERON:0001434!8.62e-11!101;UBERON:0002390!2.68e-10!102;UBERON:0003061!2.68e-10!102;UBERON:0002405!1.02e-09!115;UBERON:0002193!1.35e-09!112;UBERON:0003081!1.58e-09!216;UBERON:0002204!7.18e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.77e-48,76;UBERON:0001474,1.63e-44,82;UBERON:0004765,4.86e-40,90;UBERON:0002405,1.47e-38,93;UBERON:0002390,2.74e-36,98;UBERON:0003061,2.74e-36,98;UBERON:0001434,1.92e-35,100;UBERON:0002193,2.25e-32,108;UBERON:0003081,1.74e-24,203;UBERON:0002204,1.14e-23,167;UBERON:0000926,3.28e-13,315;UBERON:0004120,3.28e-13,315;UBERON:0006603,3.28e-13,315;UBERON:0002384,1.02e-07,371 | |||
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| |||
|short_description=p26@RTN4 | |||
}} |
Revision as of 19:02, 12 September 2013
Short description: | p26@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_26_at_RTN4_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -377bp_to_ENST00000404909_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.66e-81 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.66e-81 | 42 |
defensive cell | 2.17e-70 | 48 |
phagocyte | 2.17e-70 | 48 |
macrophage dendritic cell progenitor | 2.76e-57 | 61 |
monopoietic cell | 4.17e-55 | 59 |
monocyte | 4.17e-55 | 59 |
monoblast | 4.17e-55 | 59 |
promonocyte | 4.17e-55 | 59 |
granulocyte monocyte progenitor cell | 1.10e-51 | 67 |
myeloid lineage restricted progenitor cell | 1.02e-48 | 66 |
myeloid leukocyte | 3.25e-44 | 72 |
myeloid cell | 6.66e-30 | 108 |
common myeloid progenitor | 6.66e-30 | 108 |
hematopoietic lineage restricted progenitor cell | 2.56e-26 | 120 |
nongranular leukocyte | 1.42e-25 | 115 |
leukocyte | 1.62e-22 | 136 |
hematopoietic oligopotent progenitor cell | 4.42e-18 | 161 |
hematopoietic multipotent progenitor cell | 4.42e-18 | 161 |
hematopoietic stem cell | 4.48e-17 | 168 |
hematopoietic cell | 6.73e-16 | 177 |
mesenchymal cell | 2.02e-08 | 354 |
connective tissue cell | 4.00e-08 | 361 |
multi fate stem cell | 8.01e-08 | 427 |
somatic stem cell | 1.30e-07 | 433 |
stem cell | 2.44e-07 | 441 |
motile cell | 4.45e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.77e-48 | 76 |
bone element | 1.63e-44 | 82 |
skeletal element | 4.86e-40 | 90 |
immune system | 1.47e-38 | 93 |
hematopoietic system | 2.74e-36 | 98 |
blood island | 2.74e-36 | 98 |
skeletal system | 1.92e-35 | 100 |
hemolymphoid system | 2.25e-32 | 108 |
lateral plate mesoderm | 1.74e-24 | 203 |
musculoskeletal system | 1.14e-23 | 167 |
mesoderm | 3.28e-13 | 315 |
mesoderm-derived structure | 3.28e-13 | 315 |
presumptive mesoderm | 3.28e-13 | 315 |
connective tissue | 1.02e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.