FFCP PHASE1:Hg19::chr2:136499241..136499262,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23190|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14860|TSSclassifier=S|UniProt=C9JLR4|association_with_transcript=-41bp_to_ENST00000415164_5end|coexpression_cluster_id=C2|description=CAGE_peak_4_at_UBXN4_5end|id=chr2:136499241..136499262,+|ontology_enrichment_celltype=CL:0000037!7.92e-22!172;CL:0000566!7.92e-22!172;CL:0000738!1.61e-19!140;CL:0002032!6.86e-19!165;CL:0000837!6.86e-19!165;CL:0002057!2.61e-17!42;CL:0000988!2.99e-17!182;CL:0000860!8.71e-16!45;CL:0002031!1.08e-14!124;CL:0000763!1.25e-14!112;CL:0000049!1.25e-14!112;CL:0000766!8.20e-14!76;CL:0002087!2.41e-13!119;CL:0000557!6.30e-11!71;CL:0000839!1.10e-10!70;CL:0002009!7.86e-09!65;CL:0002194!1.46e-08!63;CL:0000576!1.46e-08!63;CL:0000040!1.46e-08!63;CL:0000559!1.46e-08!63;CL:0000791!2.41e-08!18;CL:0000789!2.41e-08!18;CL:0002420!2.41e-08!18;CL:0002419!2.41e-08!18;CL:0000790!2.41e-08!18;CL:0000084!8.42e-07!25;CL:0000827!8.42e-07!25|ontology_enrichment_celltype_v019=CL:0000860;1.44e-16;33!CL:0002057;1.44e-16;33!CL:0000576;1.52e-10;48!CL:0000473;1.73e-10;39!CL:0000234;1.73e-10;39!CL:0000766;2.51e-08;69!CL:0000791;2.55e-08;18!CL:0000789;2.55e-08;18!CL:0002419;2.55e-08;18|ontology_enrichment_celltype_v019_2=CL:0000037,3.75e-23,168;CL:0000738,7.39e-21,136;CL:0002032,4.18e-20,161;CL:0000837,4.18e-20,161;CL:0000988,5.49e-19,177;CL:0000860,2.37e-17,42;CL:0002057,2.37e-17,42;CL:0000763,3.98e-16,108;CL:0000049,3.98e-16,108;CL:0002031,7.56e-16,120;CL:0000766,1.30e-15,72;CL:0002087,1.91e-14,115;CL:0000473,1.38e-13,48;CL:0000234,1.38e-13,48;CL:0000557,1.70e-12,67;CL:0000839,3.04e-12,66;CL:0002009,3.06e-10,61;CL:0002194,5.75e-10,59;CL:0000576,5.75e-10,59;CL:0000040,5.75e-10,59;CL:0000559,5.75e-10,59;CL:0000791,2.05e-08,18;CL:0000789,2.05e-08,18;CL:0002420,2.05e-08,18;CL:0002419,2.05e-08,18;CL:0000790,2.05e-08,18|ontology_enrichment_development_v019=CL:0002057;4.93e-13;42!CL:0000790;2.55e-08;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!6.41e-12!102;UBERON:0003061!6.41e-12!102;UBERON:0002193!6.94e-10!112;UBERON:0002371!1.18e-08!80;UBERON:0001474!1.86e-08!86;UBERON:0007023!2.79e-07!115;UBERON:0004765!3.35e-07!101;UBERON:0001434!3.35e-07!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.73e-13,98;UBERON:0003061,2.73e-13,98;UBERON:0002193,6.46e-11,108;UBERON:0002371,6.85e-10,76;UBERON:0001474,1.29e-09,82;UBERON:0002405,9.03e-09,93;UBERON:0004765,2.64e-08,90;UBERON:0001434,9.02e-08,100;UBERON:0007023,2.01e-07,114|phase1_expression=2.36181893051724,1.71280419112787,2.39622486963151,0,0.893922188854576,0.872338524100369,0,3.15859936713415,1.30592814099919,0.737201809504527,0,0,0.263766978228454,1.60896258848061,1.32558950291166,2.01697543935533,1.20538905604795,2.92124036154949,0.975865597581014,0.738726348460727,0.612002073732759,0.940364164434263,2.0036519099174,1.77936752594749,1.88313959392204,1.60468152070698,1.23150884174919,1.65292640758726,5.11373559903575,5.75744097145819,6.19264493264304,0.919421224478927,0,1.10926203050036,3.33108962495297,0.853015394924529,5.5784083473621,7.75593571944628,7.01905566145496,7.59538047505481,2.91090116511902,5.18229865630367,2.06060454107349,4.50734540216651,4.53451132426571,4.36651310138069,8.83230340241602,8.63452564845834,10.8397229813286,10.0692337312753,7.94098190240212,8.0403958162119,6.20542225325913,7.74581620300591,6.77132432971709,5.45902784673554,7.09555990150399,4.94391665779186,7.03992952453076,6.41858054152187,9.59005688698562,9.23583640522805,5.78444607102732,5.54092175692502,11.3181603065148,18.1563271901165,13.7020894779026,10.80369260604,10.9511412868242,11.0766310799609,8.47559303686716,12.5214396235772,6.64571013625857,3.38008458099107,1.91343869968539,2.09658645508376,3.36985893439485,3.60424542819615,3.85741408072992,0.855038231223746,3.58050018958362,2.19196984517561,5.27988733383968,2.18455444504853,3.55803701545422,1.28019066769952,3.60356388332411,2.29900975981793,2.64417949113945,2.86216126360609,3.98449078376614,1.76171156811282,3.05818582500183,10.5737062863221,14.0127140745384,4.21414535640123,9.83548850569165,10.2182798314783,9.04646595597841,2.50779743086017,7.82213439920617,9.46895611469466,7.79306913631645,5.01347055983281,5.00830042707223,6.20294904834139,4.33286182024025,1.66518715643378,2.9913649938772,2.63100647365882,2.76350017785848,4.05724320029073,6.52460877913066,5.88589821797369,10.4535523804977,3.39928028092699,5.74830740402882,6.18529401868734,7.08455137654608,2.86708872891687,5.85975108470777,2.85135613334512,6.625305239422,5.11946444617674,6.24653632761729,3.78843603270427,3.28451198768419,8.0642697289893,11.2324882229073,8.68946423296794,0,0,1.53435074212236,1.44575660953827,2.00535164254356,0.724232594804119,1.5905718941022,1.94653948121054,2.6469748805939,2.21729397462564,1.84453049955565,1.5062593682237,0.364295288292542,0.370784442784429,0,0.348259474598534,0.132957960518865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7,2.3571602503328,1.14640342257068,3.54854606920909,1.68843961545987,1.56215619722769,2.68692835451539,1.58539525484767,4.92277328116398,5.48257766857182,5.45832296228224,4.92439484206938,1.40538670403555,3.74991285114801,3.69912094440706,2.42786241694653,3.41493287026946,4.25771376780666,1.38280785066935,6.17356833974707,3.46645638181842,1.84163765975977,0.709163045303809,1.11231401892069,4.4741062924793,2.67096502857203,3.08299379645168,3.65263488203798,3.0229862770607,3.8220135030964,3.9312099297161,1.89616334079272,1.51113852978563,2.43401581223611,4.00855682365126,0.828864656652147,2.56077715640925,4.14755797088455,3.44181887056222,0.591660003652827,0.937347452350735,3.81048345171836,4.1239236337929,1.24082554265728,1.91107787795487,1.78968690876468,0.883352102537187,2.07260472469858,1.94228651156368,2.56657017140618,2.3196288626764,4.85710993059139,3.50909195193158,5.37167092935694,1.18920090777569,4.63078936359736,4.94732325354431,0.905777061400041,3.93588206350518,3.93407208907123,7.05475944542284,1.71603825227734,8.01300260145528,4.12247780941385,4.75274240523338,0.8453114551668,2.71883383500507,1.97366227757693,2.32048396704878,2.49852889812322,6.60649572840933,2.82315897372553,5.61689566824178,2.19100916473955,2.2936464170227,4.58686666084644,2.0510303085114,1.42782129400921,3.05445483238264,6.87734892670021,2.23197010900051,2.31087814315709,0.865253124247578,1.89249637252618,2.95017044301978,1.26698501011437,5.609385635809,6.94765253690457,7.25969706325275,8.52405633594075,2.57647573942014,4.28742608249886,4.97501663675268,5.06821679723287,3.41174371041569,3.80903090341985,8.65491391802482,8.62838528712425,1.34558235096736,3.24600507218641,5.65928129083014,3.04803447055746,2.73786640868225,2.22261774948139,4.08816570738255,6.32054677437425,1.54666210360852,2.66818364694289,0,2.78458126530419,2.34640942403454,4.40069199058319,5.2896503181046,5.99181096766961,4.02547587182052,0.641136984606466|short_description=p4@UBXN4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23190 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14860 | |||
|TSSclassifier=S | |||
|UniProt=C9JLR4 | |||
|association_with_transcript=-41bp_to_ENST00000415164_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_4_at_UBXN4_5end | |||
|id=chr2:136499241..136499262,+ | |||
|ontology_enrichment_celltype=CL:0000037!7.92e-22!172;CL:0000566!7.92e-22!172;CL:0000738!1.61e-19!140;CL:0002032!6.86e-19!165;CL:0000837!6.86e-19!165;CL:0002057!2.61e-17!42;CL:0000988!2.99e-17!182;CL:0000860!8.71e-16!45;CL:0002031!1.08e-14!124;CL:0000763!1.25e-14!112;CL:0000049!1.25e-14!112;CL:0000766!8.20e-14!76;CL:0002087!2.41e-13!119;CL:0000557!6.30e-11!71;CL:0000839!1.10e-10!70;CL:0002009!7.86e-09!65;CL:0002194!1.46e-08!63;CL:0000576!1.46e-08!63;CL:0000040!1.46e-08!63;CL:0000559!1.46e-08!63;CL:0000791!2.41e-08!18;CL:0000789!2.41e-08!18;CL:0002420!2.41e-08!18;CL:0002419!2.41e-08!18;CL:0000790!2.41e-08!18;CL:0000084!8.42e-07!25;CL:0000827!8.42e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.44e-16;33!CL:0002057;1.44e-16;33!CL:0000576;1.52e-10;48!CL:0000473;1.73e-10;39!CL:0000234;1.73e-10;39!CL:0000766;2.51e-08;69!CL:0000791;2.55e-08;18!CL:0000789;2.55e-08;18!CL:0002419;2.55e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.75e-23,168;CL:0000738,7.39e-21,136;CL:0002032,4.18e-20,161;CL:0000837,4.18e-20,161;CL:0000988,5.49e-19,177;CL:0000860,2.37e-17,42;CL:0002057,2.37e-17,42;CL:0000763,3.98e-16,108;CL:0000049,3.98e-16,108;CL:0002031,7.56e-16,120;CL:0000766,1.30e-15,72;CL:0002087,1.91e-14,115;CL:0000473,1.38e-13,48;CL:0000234,1.38e-13,48;CL:0000557,1.70e-12,67;CL:0000839,3.04e-12,66;CL:0002009,3.06e-10,61;CL:0002194,5.75e-10,59;CL:0000576,5.75e-10,59;CL:0000040,5.75e-10,59;CL:0000559,5.75e-10,59;CL:0000791,2.05e-08,18;CL:0000789,2.05e-08,18;CL:0002420,2.05e-08,18;CL:0002419,2.05e-08,18;CL:0000790,2.05e-08,18 | |||
|ontology_enrichment_development_v019=CL:0002057;4.93e-13;42!CL:0000790;2.55e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.41e-12!102;UBERON:0003061!6.41e-12!102;UBERON:0002193!6.94e-10!112;UBERON:0002371!1.18e-08!80;UBERON:0001474!1.86e-08!86;UBERON:0007023!2.79e-07!115;UBERON:0004765!3.35e-07!101;UBERON:0001434!3.35e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.73e-13,98;UBERON:0003061,2.73e-13,98;UBERON:0002193,6.46e-11,108;UBERON:0002371,6.85e-10,76;UBERON:0001474,1.29e-09,82;UBERON:0002405,9.03e-09,93;UBERON:0004765,2.64e-08,90;UBERON:0001434,9.02e-08,100;UBERON:0007023,2.01e-07,114 | |||
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| |||
|short_description=p4@UBXN4 | |||
}} |
Revision as of 13:36, 12 September 2013
Short description: | p4@UBXN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_UBXN4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -41bp_to_ENST00000415164_5end |
EntrezGene: | UBXN4 |
HGNC: | 14860 |
UniProt: | C9JLR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.75e-23 | 168 |
leukocyte | 7.39e-21 | 136 |
hematopoietic oligopotent progenitor cell | 4.18e-20 | 161 |
hematopoietic multipotent progenitor cell | 4.18e-20 | 161 |
hematopoietic cell | 5.49e-19 | 177 |
classical monocyte | 2.37e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.37e-17 | 42 |
myeloid cell | 3.98e-16 | 108 |
common myeloid progenitor | 3.98e-16 | 108 |
hematopoietic lineage restricted progenitor cell | 7.56e-16 | 120 |
myeloid leukocyte | 1.30e-15 | 72 |
nongranular leukocyte | 1.91e-14 | 115 |
defensive cell | 1.38e-13 | 48 |
phagocyte | 1.38e-13 | 48 |
granulocyte monocyte progenitor cell | 1.70e-12 | 67 |
myeloid lineage restricted progenitor cell | 3.04e-12 | 66 |
macrophage dendritic cell progenitor | 3.06e-10 | 61 |
monopoietic cell | 5.75e-10 | 59 |
monocyte | 5.75e-10 | 59 |
monoblast | 5.75e-10 | 59 |
promonocyte | 5.75e-10 | 59 |
mature alpha-beta T cell | 2.05e-08 | 18 |
alpha-beta T cell | 2.05e-08 | 18 |
immature T cell | 2.05e-08 | 18 |
mature T cell | 2.05e-08 | 18 |
immature alpha-beta T cell | 2.05e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.73e-13 | 98 |
blood island | 2.73e-13 | 98 |
hemolymphoid system | 6.46e-11 | 108 |
bone marrow | 6.85e-10 | 76 |
bone element | 1.29e-09 | 82 |
immune system | 9.03e-09 | 93 |
skeletal element | 2.64e-08 | 90 |
skeletal system | 9.02e-08 | 100 |
adult organism | 2.01e-07 | 114 |
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