FFCP PHASE1:Hg19::chr22:44577180..44577195,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64098|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14654|TSSclassifier=S|UniProt=E7EVM6|association_with_transcript=-20bp_to_ENST00000428773,NM_001254743,NR_024428,uc010gzq.1,uc010gzr.1_5end|description=CAGE_peak_6_at_PARVG_5end|id=chr22:44577180..44577195,+|ontology_enrichment_celltype=CL:0000037!1.47e-75!172;CL:0000566!1.47e-75!172;CL:0002032!9.47e-69!165;CL:0000837!9.47e-69!165;CL:0000988!1.94e-68!182;CL:0000738!4.99e-64!140;CL:0002031!2.12e-53!124;CL:0002087!1.67e-52!119;CL:0000763!6.20e-40!112;CL:0000049!6.20e-40!112;CL:0000766!1.83e-29!76;CL:0000557!2.24e-28!71;CL:0000839!2.30e-26!70;CL:0000542!6.40e-25!53;CL:0000051!6.40e-25!53;CL:0002009!1.22e-24!65;CL:0000838!1.40e-24!52;CL:0002194!7.45e-24!63;CL:0000576!7.45e-24!63;CL:0000040!7.45e-24!63;CL:0000559!7.45e-24!63;CL:0002057!1.65e-21!42;CL:0000860!4.19e-19!45;CL:0000791!1.42e-15!18;CL:0000789!1.42e-15!18;CL:0002420!1.42e-15!18;CL:0002419!1.42e-15!18;CL:0000790!1.42e-15!18;CL:0000134!6.10e-14!358;CL:0002320!6.85e-13!365;CL:0000084!5.43e-12!25;CL:0000827!5.43e-12!25;CL:0000945!9.95e-12!24;CL:0000826!9.95e-12!24;CL:0000236!1.18e-11!14;CL:0000625!3.46e-10!11;CL:0000219!2.36e-09!390|ontology_enrichment_celltype_v019=CL:0000791;7.48e-21;18!CL:0000789;7.48e-21;18!CL:0002419;7.48e-21;18!CL:0000084;1.87e-17;25!CL:0000236;9.34e-17;13!CL:0000542;1.25e-16;53!CL:0002087;8.22e-15;104!CL:0000625;5.63e-14;11!CL:0000738;3.29e-12;136!CL:0000576;4.95e-11;48!CL:0000945;9.94e-11;24!CL:0000766;5.46e-09;69!CL:0000988;7.63e-09;177!CL:0000860;1.66e-07;33!CL:0002057;1.66e-07;33!CL:0000624;2.36e-07;6!CL:0000763;2.86e-07;100!CL:0000784;5.48e-07;3|ontology_enrichment_celltype_v019_2=CL:0000037,6.73e-59,168;CL:0000988,1.26e-54,177;CL:0000738,1.44e-54,136;CL:0002032,4.32e-50,161;CL:0000837,4.32e-50,161;CL:0002087,5.52e-47,115;CL:0002031,7.14e-44,120;CL:0000838,1.17e-30,52;CL:0000542,7.22e-30,53;CL:0000051,7.22e-30,53;CL:0000791,2.75e-21,18;CL:0000789,2.75e-21,18;CL:0002420,2.75e-21,18;CL:0002419,2.75e-21,18;CL:0000790,2.75e-21,18;CL:0000763,6.44e-21,108;CL:0000049,6.44e-21,108;CL:0000766,8.22e-20,72;CL:0000236,3.97e-18,14;CL:0000084,6.04e-18,25;CL:0000827,6.04e-18,25;CL:0000557,1.51e-16,67;CL:0000839,1.36e-15,66;CL:0000134,3.70e-15,354;CL:0002194,1.24e-14,59;CL:0000576,1.24e-14,59;CL:0000040,1.24e-14,59;CL:0000559,1.24e-14,59;CL:0002320,2.02e-14,361;CL:0000625,2.83e-14,11;CL:0002009,6.72e-14,61;CL:0000219,7.48e-12,386;CL:0000473,2.69e-11,48;CL:0000234,2.69e-11,48;CL:0000860,4.08e-11,42;CL:0002057,4.08e-11,42;CL:0000945,7.28e-11,24;CL:0000826,7.28e-11,24;CL:0000034,7.82e-09,441;CL:0000048,8.46e-09,427;CL:0000723,2.18e-08,433;CL:0000624,1.88e-07,6;CL:0000784,5.67e-07,3|ontology_enrichment_development_v019=CL:0000790;7.48e-21;18!CL:0000051;1.25e-16;53!CL:0000049;5.65e-09;108!CL:0002057;1.33e-07;42|ontology_enrichment_disease=DOID:1240!2.51e-11!39;DOID:8692!1.12e-10!31;DOID:2531!1.13e-08!51;DOID:0060083!1.13e-08!51|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:1240,3.60e-07,39|ontology_enrichment_uberon=UBERON:0002390!1.97e-34!102;UBERON:0003061!1.97e-34!102;UBERON:0002193!3.58e-32!112;UBERON:0002371!4.29e-24!80;UBERON:0001474!1.23e-22!86;UBERON:0002405!1.60e-19!115;UBERON:0004765!2.09e-17!101;UBERON:0001434!2.09e-17!101;UBERON:0002384!1.43e-12!375;UBERON:0007023!1.36e-11!115;UBERON:0000178!4.42e-07!15;UBERON:0000179!4.42e-07!15;UBERON:0000463!4.42e-07!15|ontology_enrichment_uberon_v019=UBERON:0002390;5.07e-08;32!UBERON:0000178;1.64e-07;15!UBERON:0000179;1.64e-07;15!UBERON:0000463;1.64e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.87e-26,98;UBERON:0003061,1.87e-26,98;UBERON:0002193,2.32e-25,108;UBERON:0002405,3.44e-19,93;UBERON:0002371,9.13e-15,76;UBERON:0002384,5.83e-14,371;UBERON:0001474,5.10e-13,82;UBERON:0004765,4.49e-11,90;UBERON:0004177,3.76e-09,7;UBERON:0005057,3.76e-09,7;UBERON:0001434,4.08e-09,100;UBERON:0002370,5.44e-08,4;UBERON:0005058,5.44e-08,4;UBERON:0009113,5.44e-08,4;UBERON:0003295,5.44e-08,4;UBERON:0005562,5.44e-08,4;UBERON:0000178,1.39e-07,15;UBERON:0000179,1.39e-07,15;UBERON:0000463,1.39e-07,15;UBERON:0003081,9.80e-07,203|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.410502947249729,0.236132343941038,1.96682138424452,1.53531759238885,1.08371286321253,0,0,0,0,0.568676929949686,4.11040615068786,1.10799081706375,1.40381113229099,2.17010870715852,2.01523926815932,0.32389366601898,1.03030227053675,1.45398238779565,1.13362783106643,0.242584061187816,0.697287110717054,1.6446715520873,0.929119112685311,0.28769239232215,0.768482119587302,1.18241114944293,2.41321976515633,1.93645405075148,0,0.941211697713023,1.09162460023138,0.898893937780338,1.22433556948361,1.60464513538047,1.91801137739712,0.989553900560148,0.797854630486527,1.27867425159808,0.870627715885752,1.70215567407342,0.622822248995575,1.50749199154046,1.0429658368404,0.217188844705117,0.605399502633369,0.736555271975129,0.316462387440884,0.633765858935825,1.27562579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.406896178315738,0,2.21401172950129,3.52625341533556|short_description=p6@PARVG}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=64098 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14654 | |||
|TSSclassifier=S | |||
|UniProt=E7EVM6 | |||
|association_with_transcript=-20bp_to_ENST00000428773,NM_001254743,NR_024428,uc010gzq.1,uc010gzr.1_5end | |||
|description=CAGE_peak_6_at_PARVG_5end | |||
|id=chr22:44577180..44577195,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.47e-75!172;CL:0000566!1.47e-75!172;CL:0002032!9.47e-69!165;CL:0000837!9.47e-69!165;CL:0000988!1.94e-68!182;CL:0000738!4.99e-64!140;CL:0002031!2.12e-53!124;CL:0002087!1.67e-52!119;CL:0000763!6.20e-40!112;CL:0000049!6.20e-40!112;CL:0000766!1.83e-29!76;CL:0000557!2.24e-28!71;CL:0000839!2.30e-26!70;CL:0000542!6.40e-25!53;CL:0000051!6.40e-25!53;CL:0002009!1.22e-24!65;CL:0000838!1.40e-24!52;CL:0002194!7.45e-24!63;CL:0000576!7.45e-24!63;CL:0000040!7.45e-24!63;CL:0000559!7.45e-24!63;CL:0002057!1.65e-21!42;CL:0000860!4.19e-19!45;CL:0000791!1.42e-15!18;CL:0000789!1.42e-15!18;CL:0002420!1.42e-15!18;CL:0002419!1.42e-15!18;CL:0000790!1.42e-15!18;CL:0000134!6.10e-14!358;CL:0002320!6.85e-13!365;CL:0000084!5.43e-12!25;CL:0000827!5.43e-12!25;CL:0000945!9.95e-12!24;CL:0000826!9.95e-12!24;CL:0000236!1.18e-11!14;CL:0000625!3.46e-10!11;CL:0000219!2.36e-09!390 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.48e-21;18!CL:0000789;7.48e-21;18!CL:0002419;7.48e-21;18!CL:0000084;1.87e-17;25!CL:0000236;9.34e-17;13!CL:0000542;1.25e-16;53!CL:0002087;8.22e-15;104!CL:0000625;5.63e-14;11!CL:0000738;3.29e-12;136!CL:0000576;4.95e-11;48!CL:0000945;9.94e-11;24!CL:0000766;5.46e-09;69!CL:0000988;7.63e-09;177!CL:0000860;1.66e-07;33!CL:0002057;1.66e-07;33!CL:0000624;2.36e-07;6!CL:0000763;2.86e-07;100!CL:0000784;5.48e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,6.73e-59,168;CL:0000988,1.26e-54,177;CL:0000738,1.44e-54,136;CL:0002032,4.32e-50,161;CL:0000837,4.32e-50,161;CL:0002087,5.52e-47,115;CL:0002031,7.14e-44,120;CL:0000838,1.17e-30,52;CL:0000542,7.22e-30,53;CL:0000051,7.22e-30,53;CL:0000791,2.75e-21,18;CL:0000789,2.75e-21,18;CL:0002420,2.75e-21,18;CL:0002419,2.75e-21,18;CL:0000790,2.75e-21,18;CL:0000763,6.44e-21,108;CL:0000049,6.44e-21,108;CL:0000766,8.22e-20,72;CL:0000236,3.97e-18,14;CL:0000084,6.04e-18,25;CL:0000827,6.04e-18,25;CL:0000557,1.51e-16,67;CL:0000839,1.36e-15,66;CL:0000134,3.70e-15,354;CL:0002194,1.24e-14,59;CL:0000576,1.24e-14,59;CL:0000040,1.24e-14,59;CL:0000559,1.24e-14,59;CL:0002320,2.02e-14,361;CL:0000625,2.83e-14,11;CL:0002009,6.72e-14,61;CL:0000219,7.48e-12,386;CL:0000473,2.69e-11,48;CL:0000234,2.69e-11,48;CL:0000860,4.08e-11,42;CL:0002057,4.08e-11,42;CL:0000945,7.28e-11,24;CL:0000826,7.28e-11,24;CL:0000034,7.82e-09,441;CL:0000048,8.46e-09,427;CL:0000723,2.18e-08,433;CL:0000624,1.88e-07,6;CL:0000784,5.67e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;7.48e-21;18!CL:0000051;1.25e-16;53!CL:0000049;5.65e-09;108!CL:0002057;1.33e-07;42 | |||
|ontology_enrichment_disease=DOID:1240!2.51e-11!39;DOID:8692!1.12e-10!31;DOID:2531!1.13e-08!51;DOID:0060083!1.13e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,3.60e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.97e-34!102;UBERON:0003061!1.97e-34!102;UBERON:0002193!3.58e-32!112;UBERON:0002371!4.29e-24!80;UBERON:0001474!1.23e-22!86;UBERON:0002405!1.60e-19!115;UBERON:0004765!2.09e-17!101;UBERON:0001434!2.09e-17!101;UBERON:0002384!1.43e-12!375;UBERON:0007023!1.36e-11!115;UBERON:0000178!4.42e-07!15;UBERON:0000179!4.42e-07!15;UBERON:0000463!4.42e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002390;5.07e-08;32!UBERON:0000178;1.64e-07;15!UBERON:0000179;1.64e-07;15!UBERON:0000463;1.64e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.87e-26,98;UBERON:0003061,1.87e-26,98;UBERON:0002193,2.32e-25,108;UBERON:0002405,3.44e-19,93;UBERON:0002371,9.13e-15,76;UBERON:0002384,5.83e-14,371;UBERON:0001474,5.10e-13,82;UBERON:0004765,4.49e-11,90;UBERON:0004177,3.76e-09,7;UBERON:0005057,3.76e-09,7;UBERON:0001434,4.08e-09,100;UBERON:0002370,5.44e-08,4;UBERON:0005058,5.44e-08,4;UBERON:0009113,5.44e-08,4;UBERON:0003295,5.44e-08,4;UBERON:0005562,5.44e-08,4;UBERON:0000178,1.39e-07,15;UBERON:0000179,1.39e-07,15;UBERON:0000463,1.39e-07,15;UBERON:0003081,9.80e-07,203 | |||
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| |||
|short_description=p6@PARVG | |||
}} |
Revision as of 12:19, 12 September 2013
Short description: | p6@PARVG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PARVG_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000428773, NM_001254743, NR_024428, uc010gzq.1, uc010gzr.1_5end |
EntrezGene: | PARVG |
HGNC: | 14654 |
UniProt: | E7EVM6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.87e-26 | 98 |
blood island | 1.87e-26 | 98 |
hemolymphoid system | 2.32e-25 | 108 |
immune system | 3.44e-19 | 93 |
bone marrow | 9.13e-15 | 76 |
connective tissue | 5.83e-14 | 371 |
bone element | 5.10e-13 | 82 |
skeletal element | 4.49e-11 | 90 |
hemopoietic organ | 3.76e-09 | 7 |
immune organ | 3.76e-09 | 7 |
skeletal system | 4.08e-09 | 100 |
thymus | 5.44e-08 | 4 |
hemolymphoid system gland | 5.44e-08 | 4 |
thymic region | 5.44e-08 | 4 |
pharyngeal gland | 5.44e-08 | 4 |
thymus primordium | 5.44e-08 | 4 |
blood | 1.39e-07 | 15 |
haemolymphatic fluid | 1.39e-07 | 15 |
organism substance | 1.39e-07 | 15 |
lateral plate mesoderm | 9.80e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
leukemia | 3.60e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.