FFCP PHASE1:Hg19::chr4:83933973..83933993,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=132660|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25397|TSSclassifier=S|UniProt=Q6MZP7|association_with_transcript=46bp_to_ENST00000510557,NM_001115007,uc010ijv.2_5end|description=CAGE_peak_5_at_LIN54_5end|id=chr4:83933973..83933993,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000148;2.85e-16;10!CL:0002566;1.06e-11;1!CL:0000147;1.08e-11;14!CL:0000710;3.07e-08;20|ontology_enrichment_celltype_v019_2=CL:0000148,3.28e-16,10;CL:0000541,3.28e-16,10;CL:0002566,1.06e-11,1;CL:0000147,1.20e-11,14;CL:0000710,3.29e-08,20|ontology_enrichment_development_v019=UBERON:0006241;1.78e-14;3!UBERON:0003057;1.78e-14;3!UBERON:0005425;2.81e-11;1|ontology_enrichment_disease=DOID:162!3.06e-07!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!7.28e-12!86;UBERON:0000073!7.55e-12!94;UBERON:0001016!7.55e-12!94;UBERON:0001049!1.66e-11!57;UBERON:0005068!1.66e-11!57;UBERON:0006241!1.66e-11!57;UBERON:0007135!1.66e-11!57;UBERON:0000955!4.66e-11!69;UBERON:0006238!4.66e-11!69;UBERON:0001017!6.23e-11!82;UBERON:0001893!5.02e-10!34;UBERON:0002020!7.40e-10!34;UBERON:0003528!7.40e-10!34;UBERON:0002791!1.80e-09!33;UBERON:0002780!8.39e-09!41;UBERON:0001890!8.39e-09!41;UBERON:0006240!8.39e-09!41;UBERON:0002616!9.46e-09!59;UBERON:0001869!9.76e-09!32;UBERON:0003080!2.20e-08!42;UBERON:0003075!5.95e-08!86;UBERON:0007284!5.95e-08!86;UBERON:0002346!1.83e-07!90;UBERON:0000153!2.57e-07!129;UBERON:0007811!2.57e-07!129;UBERON:0003056!2.95e-07!61;UBERON:0000033!9.33e-07!123|ontology_enrichment_uberon_v019=UBERON:0005162;8.59e-21;2!UBERON:0000122;8.59e-21;2!UBERON:0002240;1.78e-14;3!UBERON:0005174;1.78e-14;3!UBERON:0001137;1.78e-14;3!UBERON:0002336;2.81e-11;1!UBERON:0000941;2.81e-11;1!UBERON:0001785;2.81e-11;1!UBERON:0002464;2.81e-11;1!UBERON:0004904;2.81e-11;1!UBERON:0011215;2.81e-11;1!UBERON:0001018;2.81e-11;1!UBERON:0001021;2.81e-11;1!UBERON:0002473;2.81e-11;1!UBERON:0005340;2.81e-11;1!UBERON:0003544;2.81e-11;1!UBERON:0005970;2.81e-11;1!UBERON:0002316;2.81e-11;1!UBERON:0001020;2.81e-11;1!UBERON:0002437;2.81e-11;1|ontology_enrichment_uberon_v019_2=UBERON:0005162,5.20e-21,2;UBERON:0000122,5.20e-21,2;UBERON:0002240,2.26e-14,3;UBERON:0005174,2.26e-14,3;UBERON:0001137,2.26e-14,3;UBERON:0000941,1.97e-11,1;UBERON:0001785,1.97e-11,1;UBERON:0002464,1.97e-11,1;UBERON:0004904,1.97e-11,1;UBERON:0001021,1.97e-11,1;UBERON:0003902,1.97e-11,1;UBERON:0005425,1.97e-11,1;UBERON:0002336,2.42e-11,1;UBERON:0011215,2.42e-11,1;UBERON:0001018,2.42e-11,1;UBERON:0002473,2.42e-11,1;UBERON:0005340,2.42e-11,1;UBERON:0003544,2.42e-11,1;UBERON:0005970,2.42e-11,1;UBERON:0002316,2.42e-11,1;UBERON:0001020,2.42e-11,1;UBERON:0002437,2.42e-11,1;UBERON:0001016,1.91e-09,89;UBERON:0001017,1.46e-08,81;UBERON:0001049,6.18e-08,56;UBERON:0005068,6.18e-08,56;UBERON:0006241,6.18e-08,56;UBERON:0007135,6.18e-08,56;UBERON:0003075,8.88e-07,82;UBERON:0007284,8.88e-07,82|phase1_expression=0.181678379270557,0,0,1.0007329835313,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.251085279189606,0.152826811495903,0.164201178899891,0,0,0,0.154816123316076,0,0,0,0.46480320348181,0.142169232487422,0.587200878669695,0,0,0,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0.196709770113833,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.289693037921647,0,0,0.283604451492204,0,0,0.327447688744282,0,0,0.649094787309367,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.267899184852239,0.22452937262617,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0.647491777472526,0.561803226808994,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0.45071417671979,0,0.358779271377724,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0.355009592516614,0.10075209822764,0.339121184620975,0,0,0,0.121973706129595,0.132529768321485,0,0.518305275076852,0,0,0,0,0,0,0,0.236613600079688,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.491953754172454,0.514703430895577,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.231860809950154,0,0,0,0,0.790204397959275,0,0,0.234004265139238,0.148631162288728,0,0,0.141775097242386,0.179117045405697,0.290633938513962,0,4.43396914106349,0.44024217006613,0.207328115540772,0.144119953416961,0.25248486685276,2.41291998310242,0.381988425558278,1.17217447210047,0,1.13110241973656,1.50171528921959,0.571652865261156,0.112131084345361,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0.336255431980582,0,0,0.128343036279748,0.76228387266739,0,0.773288812777695,0,0,0,0,0.41441551343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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=132660 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25397 | |||
|TSSclassifier=S | |||
|UniProt=Q6MZP7 | |||
|association_with_transcript=46bp_to_ENST00000510557,NM_001115007,uc010ijv.2_5end | |||
|description=CAGE_peak_5_at_LIN54_5end | |||
|id=chr4:83933973..83933993,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.85e-16;10!CL:0002566;1.06e-11;1!CL:0000147;1.08e-11;14!CL:0000710;3.07e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.28e-16,10;CL:0000541,3.28e-16,10;CL:0002566,1.06e-11,1;CL:0000147,1.20e-11,14;CL:0000710,3.29e-08,20 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.78e-14;3!UBERON:0003057;1.78e-14;3!UBERON:0005425;2.81e-11;1 | |||
|ontology_enrichment_disease=DOID:162!3.06e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!7.28e-12!86;UBERON:0000073!7.55e-12!94;UBERON:0001016!7.55e-12!94;UBERON:0001049!1.66e-11!57;UBERON:0005068!1.66e-11!57;UBERON:0006241!1.66e-11!57;UBERON:0007135!1.66e-11!57;UBERON:0000955!4.66e-11!69;UBERON:0006238!4.66e-11!69;UBERON:0001017!6.23e-11!82;UBERON:0001893!5.02e-10!34;UBERON:0002020!7.40e-10!34;UBERON:0003528!7.40e-10!34;UBERON:0002791!1.80e-09!33;UBERON:0002780!8.39e-09!41;UBERON:0001890!8.39e-09!41;UBERON:0006240!8.39e-09!41;UBERON:0002616!9.46e-09!59;UBERON:0001869!9.76e-09!32;UBERON:0003080!2.20e-08!42;UBERON:0003075!5.95e-08!86;UBERON:0007284!5.95e-08!86;UBERON:0002346!1.83e-07!90;UBERON:0000153!2.57e-07!129;UBERON:0007811!2.57e-07!129;UBERON:0003056!2.95e-07!61;UBERON:0000033!9.33e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0005162;8.59e-21;2!UBERON:0000122;8.59e-21;2!UBERON:0002240;1.78e-14;3!UBERON:0005174;1.78e-14;3!UBERON:0001137;1.78e-14;3!UBERON:0002336;2.81e-11;1!UBERON:0000941;2.81e-11;1!UBERON:0001785;2.81e-11;1!UBERON:0002464;2.81e-11;1!UBERON:0004904;2.81e-11;1!UBERON:0011215;2.81e-11;1!UBERON:0001018;2.81e-11;1!UBERON:0001021;2.81e-11;1!UBERON:0002473;2.81e-11;1!UBERON:0005340;2.81e-11;1!UBERON:0003544;2.81e-11;1!UBERON:0005970;2.81e-11;1!UBERON:0002316;2.81e-11;1!UBERON:0001020;2.81e-11;1!UBERON:0002437;2.81e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,5.20e-21,2;UBERON:0000122,5.20e-21,2;UBERON:0002240,2.26e-14,3;UBERON:0005174,2.26e-14,3;UBERON:0001137,2.26e-14,3;UBERON:0000941,1.97e-11,1;UBERON:0001785,1.97e-11,1;UBERON:0002464,1.97e-11,1;UBERON:0004904,1.97e-11,1;UBERON:0001021,1.97e-11,1;UBERON:0003902,1.97e-11,1;UBERON:0005425,1.97e-11,1;UBERON:0002336,2.42e-11,1;UBERON:0011215,2.42e-11,1;UBERON:0001018,2.42e-11,1;UBERON:0002473,2.42e-11,1;UBERON:0005340,2.42e-11,1;UBERON:0003544,2.42e-11,1;UBERON:0005970,2.42e-11,1;UBERON:0002316,2.42e-11,1;UBERON:0001020,2.42e-11,1;UBERON:0002437,2.42e-11,1;UBERON:0001016,1.91e-09,89;UBERON:0001017,1.46e-08,81;UBERON:0001049,6.18e-08,56;UBERON:0005068,6.18e-08,56;UBERON:0006241,6.18e-08,56;UBERON:0007135,6.18e-08,56;UBERON:0003075,8.88e-07,82;UBERON:0007284,8.88e-07,82 | |||
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| |||
|short_description=p5@LIN54 | |||
}} |
Revision as of 12:04, 13 September 2013
Short description: | p5@LIN54 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LIN54_5end |
Coexpression cluster: | NA |
Association with transcript: | 46bp_to_ENST00000510557, NM_001115007, uc010ijv.2_5end |
EntrezGene: | LIN54 |
HGNC: | 25397 |
UniProt: | Q6MZP7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.28e-16 | 10 |
melanoblast | 3.28e-16 | 10 |
dark melanocyte | 1.06e-11 | 1 |
pigment cell | 1.20e-11 | 14 |
neurecto-epithelial cell | 3.29e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 5.20e-21 | 2 |
neuron projection bundle | 5.20e-21 | 2 |
spinal cord | 2.26e-14 | 3 |
dorsal region element | 2.26e-14 | 3 |
dorsum | 2.26e-14 | 3 |
cranial nerve II | 1.97e-11 | 1 |
cranial nerve | 1.97e-11 | 1 |
nerve trunk | 1.97e-11 | 1 |
nerve connecting eye with brain | 1.97e-11 | 1 |
nerve | 1.97e-11 | 1 |
retinal neural layer | 1.97e-11 | 1 |
presumptive neural retina | 1.97e-11 | 1 |
corpus callosum | 2.42e-11 | 1 |
central nervous system cell part cluster | 2.42e-11 | 1 |
axon tract | 2.42e-11 | 1 |
intercerebral commissure | 2.42e-11 | 1 |
dorsal telencephalic commissure | 2.42e-11 | 1 |
brain white matter | 2.42e-11 | 1 |
brain commissure | 2.42e-11 | 1 |
white matter | 2.42e-11 | 1 |
nervous system commissure | 2.42e-11 | 1 |
cerebral hemisphere white matter | 2.42e-11 | 1 |
nervous system | 1.91e-09 | 89 |
central nervous system | 1.46e-08 | 81 |
neural tube | 6.18e-08 | 56 |
neural rod | 6.18e-08 | 56 |
future spinal cord | 6.18e-08 | 56 |
neural keel | 6.18e-08 | 56 |
neural plate | 8.88e-07 | 82 |
presumptive neural plate | 8.88e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.