FFCP PHASE1:Hg19::chr5:150827209..150827231,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=206358|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18761|TSSclassifier=S|UniProt=E5RG64,E7EW39|association_with_transcript=21bp_to_ENST00000517945,ENST00000521925_5end|coexpression_cluster_id=C67|description=CAGE_peak_3_at_SLC36A1_5end|id=chr5:150827209..150827231,+|ontology_enrichment_celltype=CL:0000839!6.65e-20!70;CL:0000557!2.14e-19!71;CL:0002194!5.85e-18!63;CL:0000576!5.85e-18!63;CL:0000040!5.85e-18!63;CL:0000559!5.85e-18!63;CL:0000766!1.80e-17!76;CL:0002009!8.81e-17!65;CL:0002057!5.45e-14!42;CL:0000860!2.00e-13!45;CL:0000763!6.93e-11!112;CL:0000049!6.93e-11!112|ontology_enrichment_celltype_v019=CL:0000473;1.50e-41;39!CL:0000234;1.50e-41;39!CL:0000860;4.49e-35;33!CL:0002057;4.49e-35;33!CL:0000576;1.33e-22;48!CL:0000766;2.20e-20;69!CL:0000235;5.16e-20;6!CL:0000763;5.32e-12;100!CL:0002619;5.32e-11;3|ontology_enrichment_celltype_v019_2=CL:0000557,1.33e-53,67;CL:0000839,1.66e-51,66;CL:0002194,3.74e-48,59;CL:0000576,3.74e-48,59;CL:0000040,3.74e-48,59;CL:0000559,3.74e-48,59;CL:0000766,1.86e-46,72;CL:0002009,2.65e-46,61;CL:0000473,1.69e-43,48;CL:0000234,1.69e-43,48;CL:0000763,1.57e-31,108;CL:0000049,1.57e-31,108;CL:0000860,2.72e-29,42;CL:0002057,2.72e-29,42;CL:0002031,3.73e-24,120;CL:0002087,1.46e-20,115;CL:0000738,3.20e-20,136;CL:0000235,5.51e-20,6;CL:0002032,6.02e-18,161;CL:0000837,6.02e-18,161;CL:0000037,8.45e-17,168;CL:0000988,1.37e-16,177;CL:0002619,5.11e-11,3|ontology_enrichment_development_v019=CL:0002057;5.17e-24;42!CL:0000049;2.23e-10;108!UBERON:0006215;4.53e-10;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.80e-15!80;UBERON:0001474!2.19e-14!86;UBERON:0002390!1.56e-13!102;UBERON:0003061!1.56e-13!102;UBERON:0004765!2.82e-12!101;UBERON:0001434!2.82e-12!101;UBERON:0002193!4.13e-12!112;UBERON:0002405!3.40e-10!115;UBERON:0001017!7.94e-10!82;UBERON:0001049!2.38e-09!57;UBERON:0005068!2.38e-09!57;UBERON:0006241!2.38e-09!57;UBERON:0007135!2.38e-09!57;UBERON:0005743!3.72e-09!86;UBERON:0007023!6.99e-09!115;UBERON:0000955!1.72e-08!69;UBERON:0006238!1.72e-08!69;UBERON:0002616!1.88e-08!59;UBERON:0000073!7.42e-08!94;UBERON:0001016!7.42e-08!94;UBERON:0002619!8.85e-08!22;UBERON:0003080!3.68e-07!42;UBERON:0001950!5.19e-07!20;UBERON:0001893!5.46e-07!34;UBERON:0000956!7.22e-07!25;UBERON:0000203!7.22e-07!25;UBERON:0002780!9.64e-07!41;UBERON:0001890!9.64e-07!41;UBERON:0006240!9.64e-07!41;UBERON:0001869!9.85e-07!32;UBERON:0002020!9.89e-07!34;UBERON:0003528!9.89e-07!34|ontology_enrichment_uberon_v019=UBERON:0001872;2.13e-09;5|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.75e-46,76;UBERON:0002405,8.62e-43,93;UBERON:0001474,4.37e-42,82;UBERON:0002390,7.48e-38,98;UBERON:0003061,7.48e-38,98;UBERON:0004765,1.68e-37,90;UBERON:0002193,1.96e-35,108;UBERON:0001434,8.51e-33,100;UBERON:0002204,6.39e-17,167;UBERON:0003081,4.22e-15,203;UBERON:0001872,4.05e-09,5;UBERON:0000923,3.30e-07,560;UBERON:0010316,3.30e-07,560;UBERON:0005291,3.30e-07,560;UBERON:0006598,3.30e-07,560;UBERON:0010317,3.30e-07,560;UBERON:0002532,3.30e-07,560;UBERON:0002050,4.66e-07,564;UBERON:0000926,7.18e-07,315;UBERON:0004120,7.18e-07,315;UBERON:0006603,7.18e-07,315|phase1_expression=0.54503513781167,0.214100523890983,0.704772020479856,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0.293600439334847,0,0.200544447470142,0,7.83704159839735,21.3769819572526,14.9393829227828,2.18097358169347,1.88937971844405,0.485168122375632,0.929716147622738,3.70051099219643,2.47765096716083,1.43846196161075,2.30544635876191,1.41889337933151,1.03423704220986,1.29096936716765,1.35426486594342,2.82363509313907,4.63940455098338,2.24723484445085,0.612167784741805,2.24650318953266,1.27867425159808,1.64925650093358,2.59302754908121,0,0.290209238628584,0,0.622822248995575,3.51748131359441,1.5644487552606,1.3031330682307,1.21079900526674,2.20966581592539,0.949387162322653,0.422510572623884,0.637812899895131,0,0,0,0.16072558669708,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0.821127996921047,0,0,0.144824403882799,0,0,0,0,0,0,0.795285947051099,0.973269740605272,0.189069634328136,0,0.087834785693126,0.261958150995425,0.364295288292542,0,0.649094787309367,1.0447784237956,1.86141144726411,0,0,0,0,0,0,0.56530794192401,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0.949265659568129,0,0,0,0,0,0.12663051166458,0.529636723252875,0.573673241497627,0.354668382198357,0,0,0.24666754841716,0.933633106199299,0,0.490385709340376,0.151357427644931,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0.150238058906597,0,0.358779271377724,0,0,0.300091096084402,0.206105058476878,0.257640540045629,0,0.337552664482532,0.194874010322397,0.25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21581504,0,0,0.352894871715692,0,0.730336388246517,0,0.143339583151451,0.157771562193185,0.951880862672806,0.436350690340377,0.5290268405154,0.371995018166751,0.462175628631418,0,0,0,0.126698501011437,0.305966489225945,0.26721740526556,0.551369397209069,0,0.303114792872958,0.267964130156178,0,0.103432995861895,0.213233981900981,0,1.0980114672121,1.55186785739645,0.224263725161227,0.0636471582781649,0,0,0,0.134704106029175,0.286888821570705,0.665320713092027,0.325613074443898,0,0,0.179650404213174,0,0.122241444182866,0,0,0.402547587182052,0|short_description=p3@SLC36A1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=206358 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18761 | |||
|TSSclassifier=S | |||
|UniProt=E5RG64,E7EW39 | |||
|association_with_transcript=21bp_to_ENST00000517945,ENST00000521925_5end | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_3_at_SLC36A1_5end | |||
|id=chr5:150827209..150827231,+ | |||
|ontology_enrichment_celltype=CL:0000839!6.65e-20!70;CL:0000557!2.14e-19!71;CL:0002194!5.85e-18!63;CL:0000576!5.85e-18!63;CL:0000040!5.85e-18!63;CL:0000559!5.85e-18!63;CL:0000766!1.80e-17!76;CL:0002009!8.81e-17!65;CL:0002057!5.45e-14!42;CL:0000860!2.00e-13!45;CL:0000763!6.93e-11!112;CL:0000049!6.93e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.50e-41;39!CL:0000234;1.50e-41;39!CL:0000860;4.49e-35;33!CL:0002057;4.49e-35;33!CL:0000576;1.33e-22;48!CL:0000766;2.20e-20;69!CL:0000235;5.16e-20;6!CL:0000763;5.32e-12;100!CL:0002619;5.32e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.33e-53,67;CL:0000839,1.66e-51,66;CL:0002194,3.74e-48,59;CL:0000576,3.74e-48,59;CL:0000040,3.74e-48,59;CL:0000559,3.74e-48,59;CL:0000766,1.86e-46,72;CL:0002009,2.65e-46,61;CL:0000473,1.69e-43,48;CL:0000234,1.69e-43,48;CL:0000763,1.57e-31,108;CL:0000049,1.57e-31,108;CL:0000860,2.72e-29,42;CL:0002057,2.72e-29,42;CL:0002031,3.73e-24,120;CL:0002087,1.46e-20,115;CL:0000738,3.20e-20,136;CL:0000235,5.51e-20,6;CL:0002032,6.02e-18,161;CL:0000837,6.02e-18,161;CL:0000037,8.45e-17,168;CL:0000988,1.37e-16,177;CL:0002619,5.11e-11,3 | |||
|ontology_enrichment_development_v019=CL:0002057;5.17e-24;42!CL:0000049;2.23e-10;108!UBERON:0006215;4.53e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.80e-15!80;UBERON:0001474!2.19e-14!86;UBERON:0002390!1.56e-13!102;UBERON:0003061!1.56e-13!102;UBERON:0004765!2.82e-12!101;UBERON:0001434!2.82e-12!101;UBERON:0002193!4.13e-12!112;UBERON:0002405!3.40e-10!115;UBERON:0001017!7.94e-10!82;UBERON:0001049!2.38e-09!57;UBERON:0005068!2.38e-09!57;UBERON:0006241!2.38e-09!57;UBERON:0007135!2.38e-09!57;UBERON:0005743!3.72e-09!86;UBERON:0007023!6.99e-09!115;UBERON:0000955!1.72e-08!69;UBERON:0006238!1.72e-08!69;UBERON:0002616!1.88e-08!59;UBERON:0000073!7.42e-08!94;UBERON:0001016!7.42e-08!94;UBERON:0002619!8.85e-08!22;UBERON:0003080!3.68e-07!42;UBERON:0001950!5.19e-07!20;UBERON:0001893!5.46e-07!34;UBERON:0000956!7.22e-07!25;UBERON:0000203!7.22e-07!25;UBERON:0002780!9.64e-07!41;UBERON:0001890!9.64e-07!41;UBERON:0006240!9.64e-07!41;UBERON:0001869!9.85e-07!32;UBERON:0002020!9.89e-07!34;UBERON:0003528!9.89e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001872;2.13e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.75e-46,76;UBERON:0002405,8.62e-43,93;UBERON:0001474,4.37e-42,82;UBERON:0002390,7.48e-38,98;UBERON:0003061,7.48e-38,98;UBERON:0004765,1.68e-37,90;UBERON:0002193,1.96e-35,108;UBERON:0001434,8.51e-33,100;UBERON:0002204,6.39e-17,167;UBERON:0003081,4.22e-15,203;UBERON:0001872,4.05e-09,5;UBERON:0000923,3.30e-07,560;UBERON:0010316,3.30e-07,560;UBERON:0005291,3.30e-07,560;UBERON:0006598,3.30e-07,560;UBERON:0010317,3.30e-07,560;UBERON:0002532,3.30e-07,560;UBERON:0002050,4.66e-07,564;UBERON:0000926,7.18e-07,315;UBERON:0004120,7.18e-07,315;UBERON:0006603,7.18e-07,315 | |||
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| |||
|short_description=p3@SLC36A1 | |||
}} |
Revision as of 14:15, 13 September 2013
Short description: | p3@SLC36A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SLC36A1_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | 21bp_to_ENST00000517945, ENST00000521925_5end |
EntrezGene: | SLC36A1 |
HGNC: | 18761 |
UniProt: | E5RG64E7EW39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.33e-53 | 67 |
myeloid lineage restricted progenitor cell | 1.66e-51 | 66 |
monopoietic cell | 3.74e-48 | 59 |
monocyte | 3.74e-48 | 59 |
monoblast | 3.74e-48 | 59 |
promonocyte | 3.74e-48 | 59 |
myeloid leukocyte | 1.86e-46 | 72 |
macrophage dendritic cell progenitor | 2.65e-46 | 61 |
defensive cell | 1.69e-43 | 48 |
phagocyte | 1.69e-43 | 48 |
myeloid cell | 1.57e-31 | 108 |
common myeloid progenitor | 1.57e-31 | 108 |
classical monocyte | 2.72e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.72e-29 | 42 |
hematopoietic lineage restricted progenitor cell | 3.73e-24 | 120 |
nongranular leukocyte | 1.46e-20 | 115 |
leukocyte | 3.20e-20 | 136 |
macrophage | 5.51e-20 | 6 |
hematopoietic oligopotent progenitor cell | 6.02e-18 | 161 |
hematopoietic multipotent progenitor cell | 6.02e-18 | 161 |
hematopoietic stem cell | 8.45e-17 | 168 |
hematopoietic cell | 1.37e-16 | 177 |
adult endothelial progenitor cell | 5.11e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.75e-46 | 76 |
immune system | 8.62e-43 | 93 |
bone element | 4.37e-42 | 82 |
hematopoietic system | 7.48e-38 | 98 |
blood island | 7.48e-38 | 98 |
skeletal element | 1.68e-37 | 90 |
hemolymphoid system | 1.96e-35 | 108 |
skeletal system | 8.51e-33 | 100 |
musculoskeletal system | 6.39e-17 | 167 |
lateral plate mesoderm | 4.22e-15 | 203 |
parietal lobe | 4.05e-09 | 5 |
germ layer | 3.30e-07 | 560 |
germ layer / neural crest | 3.30e-07 | 560 |
embryonic tissue | 3.30e-07 | 560 |
presumptive structure | 3.30e-07 | 560 |
germ layer / neural crest derived structure | 3.30e-07 | 560 |
epiblast (generic) | 3.30e-07 | 560 |
embryonic structure | 4.66e-07 | 564 |
mesoderm | 7.18e-07 | 315 |
mesoderm-derived structure | 7.18e-07 | 315 |
presumptive mesoderm | 7.18e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.