FFCP PHASE1:Hg19::chr10:6622667..6622678,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=166bp_to_uc001ijl.2_5end | |||
|coexpression_cluster_id=C726 | |||
|description=CAGE_peak_5_at_uc001ijl.2_5end | |||
|id=chr10:6622667..6622678,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.45e-27!25;CL:0000827!1.45e-27!25;CL:0000791!1.94e-24!18;CL:0000789!1.94e-24!18;CL:0002420!1.94e-24!18;CL:0002419!1.94e-24!18;CL:0000790!1.94e-24!18;CL:0000838!9.82e-20!52;CL:0000542!3.50e-19!53;CL:0000051!3.50e-19!53;CL:0000625!3.76e-18!11;CL:0000037!1.00e-10!172;CL:0000566!1.00e-10!172;CL:0000988!1.38e-10!182;CL:0002032!4.59e-09!165;CL:0000837!4.59e-09!165;CL:0002087!1.84e-08!119;CL:0002031!2.00e-08!124;CL:0000738!1.71e-07!140;CL:0000624!7.77e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000625;1.89e-15;11!CL:0000791;3.12e-13;18!CL:0000789;3.12e-13;18!CL:0002419;3.12e-13;18!CL:0000084;9.16e-13;25!CL:0000037;3.32e-08;1!CL:0001024;3.32e-08;1!CL:0000895;3.32e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,3.30e-15,11;CL:0000791,5.31e-13,18;CL:0000789,5.31e-13,18;CL:0002420,5.31e-13,18;CL:0002419,5.31e-13,18;CL:0000790,5.31e-13,18;CL:0000084,1.43e-12,25;CL:0000827,1.43e-12,25;CL:0001024,2.69e-08,1;CL:0000810,5.07e-08,1;CL:0000895,5.07e-08,1;CL:0002436,5.07e-08,1;CL:0002427,5.07e-08,1;CL:0002428,5.07e-08,1;CL:0002429,5.07e-08,1;CL:0002433,5.07e-08,1;CL:0002431,5.07e-08,1;CL:0002432,5.07e-08,1 | |||
|ontology_enrichment_development_v019=CL:0000790;3.12e-13;18!CL:0002427;3.32e-08;1!UBERON:0005425;3.32e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!9.88e-08!4;UBERON:0005058!9.88e-08!4;UBERON:0009113!9.88e-08!4;UBERON:0003295!9.88e-08!4;UBERON:0005562!9.88e-08!4;UBERON:0007023!1.46e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.00e-15;2!UBERON:0005058;4.00e-15;2!UBERON:0009113;4.00e-15;2!UBERON:0000941;3.32e-08;1!UBERON:0001785;3.32e-08;1!UBERON:0002464;3.32e-08;1!UBERON:0004904;3.32e-08;1!UBERON:0001021;3.32e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.75e-16,4;UBERON:0005058,5.75e-16,4;UBERON:0009113,5.75e-16,4;UBERON:0003295,5.75e-16,4;UBERON:0005562,5.75e-16,4;UBERON:0003351,7.93e-11,6;UBERON:0004177,2.37e-09,7;UBERON:0005057,2.37e-09,7;UBERON:0000941,2.89e-08,1;UBERON:0001785,2.89e-08,1;UBERON:0002464,2.89e-08,1;UBERON:0004904,2.89e-08,1;UBERON:0001021,2.89e-08,1;UBERON:0003902,2.89e-08,1;UBERON:0005425,2.89e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0.246301768349837,0.157421562627358,0,0,0,0,0,0,0.232401601740905,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0.512321413058201,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0.56738522469114,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,2.24203425192614,0.263384084775077,0.393419540227666,0,0.205601498999509,2.50779743086017,0.32592226663359,1.4203434172042,0,1.55974639639243,0.883817722424512,1.55073726208535,1.89562704635511,1.79327847615945,1.1705341280389,1.15106533222573,3.31620021343018,2.60822777161547,1.03800594213442,1.60524496853828,0,1.81294948316106,1.14966148080576,1.37450978193052,1.77113784413652,0.95569624297229,0.651083453856419,0.950452044448374,1.05402583354441,1.15187950038977,1.24930726552346,1.65744076430812,0.821127996921047,0.80642697289893,0.802320587350522,1.01377082717959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0.44024217006613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0.197030760201927,0.431255149719035,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0.656029291399411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,1.08006287447623,0,0,0,0,0,0,0.142283686696828,0.159426272728822,0,0.383010740264733,0,0,0.280797178113459,0,0,0,0.338583555603207,0.1605880751037,0,0,0,0,0,0,0,0,0,0.270455678475983,0.66614393599564,0,0,0,0,0,0.284136146806413,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0.31900115973192,0,0,5.10966490978682,0.31396051279005,0.166211681900156,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0.296521128680622,0,0.104421949505455,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34823682632161,0,0,0,0.0730893170861856,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0.160753148465019,0.137539436597234,0.415440338029185,0,0,0.0607495566580247,0,0.0788057072991982,0.209818352539992,0,0,0,0.714695326373367,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0.213574825135389,0,0,0,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0.39997479170986,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.207471757392654,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0.131545547125698,0,0,0,0,0.280272163313789,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0.275684698604535,0,0.0757786982182394,0,0.829169439458779,0.103432995861895,0,0,1.0334225573761,2.42091385753846,0,0.0636471582781649,0,0,0,0.26940821205835,0.0717222053926763,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p5@uc001ijl.2 | |||
}} |
Revision as of 01:36, 11 January 2014
Short description: | p5@uc001ijl.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_uc001ijl.2_5end |
Coexpression cluster: | C726_chronic_CD4_Hodgkin_CD8_thymus_CD19_blood |
Association with transcript: | 166bp_to_uc001ijl.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 3.30e-15 | 11 |
mature alpha-beta T cell | 5.31e-13 | 18 |
alpha-beta T cell | 5.31e-13 | 18 |
immature T cell | 5.31e-13 | 18 |
mature T cell | 5.31e-13 | 18 |
immature alpha-beta T cell | 5.31e-13 | 18 |
T cell | 1.43e-12 | 25 |
pro-T cell | 1.43e-12 | 25 |
CD34-positive, CD38-negative hematopoietic stem cell | 2.69e-08 | 1 |
CD4-positive, alpha-beta thymocyte | 5.07e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 5.07e-08 | 1 |
mature CD4 single-positive thymocyte | 5.07e-08 | 1 |
resting double-positive thymocyte | 5.07e-08 | 1 |
double-positive blast | 5.07e-08 | 1 |
CD69-positive double-positive thymocyte | 5.07e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 5.07e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 5.07e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 5.07e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 5.75e-16 | 4 |
hemolymphoid system gland | 5.75e-16 | 4 |
thymic region | 5.75e-16 | 4 |
pharyngeal gland | 5.75e-16 | 4 |
thymus primordium | 5.75e-16 | 4 |
pharyngeal epithelium | 7.93e-11 | 6 |
hemopoietic organ | 2.37e-09 | 7 |
immune organ | 2.37e-09 | 7 |
cranial nerve II | 2.89e-08 | 1 |
cranial nerve | 2.89e-08 | 1 |
nerve trunk | 2.89e-08 | 1 |
nerve connecting eye with brain | 2.89e-08 | 1 |
nerve | 2.89e-08 | 1 |
retinal neural layer | 2.89e-08 | 1 |
presumptive neural retina | 2.89e-08 | 1 |