FFCP PHASE1:Hg19::chr14:71067360..71067400,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10001 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19970 | |||
|TSSclassifier=weak | |||
|UniProt=O75586,B4DU17,B4E2P0,G3V4A5 | |||
|association_with_transcript=0bp_to_ENST00000256379,ENST00000430055,ENST00000440435,ENST00000553611,ENST00000554870,ENST00000554963,ENST00000556044,ENST00000556423,ENST00000556495,NM_005466,uc001xmf.2,uc001xmg.1,uc010tth.1,uc010tti.1,uc010ttj.1_5end | |||
|description=CAGE_peak_1_at_MED6_5end | |||
|id=chr14:71067360..71067400,- | |||
|ontology_enrichment_celltype=CL:0000738!1.58e-24!140;CL:0002087!2.50e-21!119;CL:0002031!7.62e-21!124;CL:0000037!5.41e-19!172;CL:0000566!5.41e-19!172;CL:0002032!3.23e-17!165;CL:0000837!3.23e-17!165;CL:0000542!1.04e-16!53;CL:0000051!1.04e-16!53;CL:0000988!1.64e-16!182;CL:0000838!1.93e-16!52;CL:0000860!1.73e-10!45;CL:0002057!6.67e-10!42;CL:0000084!2.30e-08!25;CL:0000827!2.30e-08!25;CL:0000766!2.33e-08!76;CL:0000945!6.38e-08!24;CL:0000826!6.38e-08!24;CL:0000791!2.62e-07!18;CL:0000789!2.62e-07!18;CL:0002420!2.62e-07!18;CL:0002419!2.62e-07!18;CL:0000790!2.62e-07!18;CL:0000236!3.97e-07!14;CL:0000839!9.44e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000542;5.39e-10;53!CL:0000860;6.61e-10;33!CL:0002057;6.61e-10;33!CL:0000084;2.57e-08;25!CL:0002087;5.50e-08;104!CL:0000945;6.19e-08;24!CL:0000791;2.77e-07;18!CL:0000789;2.77e-07;18!CL:0002419;2.77e-07;18!CL:0000236;4.58e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.98e-24,136;CL:0002087,7.30e-21,115;CL:0002031,2.28e-20,120;CL:0000037,1.79e-18,168;CL:0002032,1.03e-16,161;CL:0000837,1.03e-16,161;CL:0000542,1.04e-16,53;CL:0000051,1.04e-16,53;CL:0000988,1.61e-16,177;CL:0000838,1.93e-16,52;CL:0000860,6.67e-10,42;CL:0002057,6.67e-10,42;CL:0000084,2.30e-08,25;CL:0000827,2.30e-08,25;CL:0000766,6.04e-08,72;CL:0000945,6.38e-08,24;CL:0000826,6.38e-08,24;CL:0000473,8.83e-08,48;CL:0000234,8.83e-08,48;CL:0000791,2.62e-07,18;CL:0000789,2.62e-07,18;CL:0002420,2.62e-07,18;CL:0002419,2.62e-07,18;CL:0000790,2.62e-07,18;CL:0000236,3.97e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;5.39e-10;53!CL:0002057;2.47e-07;42!CL:0000790;2.77e-07;18 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.83e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0002780!5.31e-11!41;UBERON:0001890!5.31e-11!41;UBERON:0006240!5.31e-11!41;UBERON:0003080!3.63e-10!42;UBERON:0001049!4.21e-10!57;UBERON:0005068!4.21e-10!57;UBERON:0006241!4.21e-10!57;UBERON:0007135!4.21e-10!57;UBERON:0001893!1.19e-08!34;UBERON:0001869!1.56e-08!32;UBERON:0002020!2.06e-08!34;UBERON:0003528!2.06e-08!34;UBERON:0002791!2.59e-08!33;UBERON:0002619!3.39e-08!22;UBERON:0005743!5.33e-08!86;UBERON:0000073!9.14e-08!94;UBERON:0001016!9.14e-08!94;UBERON:0001017!9.26e-08!82;UBERON:0002616!1.19e-07!59;UBERON:0001950!1.76e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.70e-08;22!UBERON:0002780;5.70e-08;41!UBERON:0001890;5.70e-08;41!UBERON:0001869;8.52e-08;32!UBERON:0003528;1.28e-07;34!UBERON:0002020;1.28e-07;34!UBERON:0001893;1.36e-07;34!UBERON:0001950;1.37e-07;20!UBERON:0002791;1.67e-07;32!UBERON:0000073;6.50e-07;53!UBERON:0002616;6.50e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,5.31e-11,41;UBERON:0001890,5.31e-11,41;UBERON:0003080,5.31e-11,41;UBERON:0006240,5.31e-11,41;UBERON:0001049,8.61e-11,56;UBERON:0005068,8.61e-11,56;UBERON:0006241,8.61e-11,56;UBERON:0007135,8.61e-11,56;UBERON:0000073,9.57e-11,53;UBERON:0002616,9.57e-11,53;UBERON:0001893,1.19e-08,34;UBERON:0001869,1.56e-08,32;UBERON:0003528,2.06e-08,34;UBERON:0002020,2.06e-08,34;UBERON:0001017,3.18e-08,81;UBERON:0002791,3.33e-08,32;UBERON:0002619,3.39e-08,22;UBERON:0001016,6.00e-08,89;UBERON:0001950,1.76e-07,20;UBERON:0000955,9.91e-07,68;UBERON:0006238,9.91e-07,68 | |||
|phase1_expression=22.528119029549,21.4100523890983,24.385111908603,18.0131937035635,15.6436383049551,17.4467704820074,12.6649939084155,21.4784756965123,14.8875808073908,8.84642171405432,4.18680700783456,14.4171305605914,11.605747042052,28.0949621219306,16.2384714106679,24.8760304187157,20.4916139528152,23.3699228923959,20.9811103479918,7.01790031037691,4.08001382488506,5.95563970808367,27.4786547645814,21.7630335865886,16.4460857869192,39.8877978004306,43.6775135873711,49.0368167584222,40.5165205154371,65.6348270746234,32.0469375264277,12.871897142705,7.8313538882345,19.227208528673,25.951512194401,27.4386618700724,34.9384522808468,24.9297933839345,28.6778559882303,24.956250132323,26.645941434551,27.5309616116133,28.5908880073947,36.9311526500094,36.2760905941257,32.5062641991674,29.2860586501163,31.2487594896588,45.8365428924753,39.7015501404568,46.8774092948254,56.0462884835947,42.4037187306041,59.384590889712,28.4395621848118,35.0130751549245,49.6689193105279,52.8100188445949,35.5057315150247,43.9672767094248,45.3929359317319,36.9433456209122,33.9088217956774,43.0486998038021,46.4334781805734,34.6104987061595,50.4486021686416,45.2247597462138,46.4119797393979,65.3738422562401,47.8265607080361,48.9809255863461,60.7607783886498,33.1670799509749,30.6150191949663,31.8681141172731,26.6218855817193,31.2367937110333,36.8061593536314,23.0860322430411,32.8212517378499,36.5328307529268,51.0389108937836,40.9603958446599,48.033499708632,43.0997524792172,46.0455385091414,43.1064329965862,39.0016474943069,43.8864727086267,48.3831023743031,68.7067511563998,60.3991700437862,38.3296852879175,52.6878049202644,30.0257856643588,68.6517097697277,47.1612915298998,36.5970668219126,43.8028617923577,60.9474638604814,64.3889015799237,54.5514839542152,45.4554664091508,52.439851530521,50.9527957542329,47.6614800226427,33.5599257681269,30.5639466765714,30.9143260654911,39.5180525433763,46.9480998890785,64.3563684123342,71.4334010999534,44.95027523614,42.83093153968,43.687136270619,44.3279404672593,65.5321002330512,36.9535880615952,29.2987554235388,37.0676297334866,48.3346132239651,41.3396754028771,37.4792179657038,30.7810427657222,37.7718878583681,57.256315075824,55.360120527186,67.3433478055015,26.8187552945358,28.8401369672564,21.6087729515566,28.9151321907653,20.0535164254356,18.8300474649071,40.5595832996061,22.8718389042239,26.1861443544468,25.4988807081949,20.0263311380327,28.9463756849945,3.27865759463288,9.64039551239516,20.446485800245,22.9851253235033,20.2096099988675,41.9743498777402,39.4676488438288,48.2894751728434,20.0750031440372,16.3444573070164,17.0098845787721,14.6980064900242,20.1359729380755,22.8347974810256,20.4815067206074,22.7406748069009,22.7690408119495,30.7942963743497,22.9612710752214,27.3697958058665,13.9115372802457,23.5304371421356,19.4434067491622,33.9338967479503,12.3491154944393,16.3286646700817,18.397996495906,23.7316414892032,15.2057447462238,63.2546003693104,23.2668158488995,3.48875241714027,16.8970463576408,25.7059938679097,25.1577443545116,29.8310085578766,17.3787507277195,24.6698144062615,18.1473292740498,17.5133959376184,25.8305159381806,20.8801541708016,23.0481283389977,14.8330279092033,20.74233328128,8.43557154601668,14.6715236110251,17.6846264678779,17.0371495829053,25.6007207043407,26.5471628763736,26.6856532734272,21.8444963242736,24.8125320969771,17.2554054563528,29.7000714320513,22.0067567057916,7.28129089550421,2.87447256726495,32.8255422210429,22.5213335769535,23.2733857006714,20.6319481813994,20.5346823185343,15.9252342440993,32.555036566926,34.6221996879504,27.7624605464138,28.3988747553813,28.5086541280182,28.2363930113323,37.6155188466619,21.2173216218012,34.4303717772183,26.8926134244908,38.1174999108613,30.744666146528,31.0360429092119,34.080920881595,27.9083312090564,26.1123312158151,26.2834760302084,28.6383426620376,23.2311722265093,27.3221101730294,38.8312221181952,35.2067646894641,30.4763501745189,33.8109940173342,23.7235283399289,14.0804579096834,13.5080597020506,15.1948413487729,26.4689718978228,25.2657818584355,39.9876984134672,39.785986858432,40.7308640503085,36.7278929198872,32.6819166138609,38.9123815342198,36.4044532032444,36.1047495830637,36.5509799099071,6.64339909162183,0,3.2925920906512,4.41026134156626,25.3510069643662,14.7424082501644,21.2684366405305,39.2902158479039,39.7252656494257,25.5636037344803,26.0108176418443,15.7362454560667,23.42325057191,31.5726597990586,13.6839488230336,3.11980435583874,28.8662684050547,23.3020113999904,20.6639301855046,30.6056869253477,25.4642031917136,30.2504102053011,29.2375627244932,35.1979326458898,24.6217006087397,26.9104904910123,17.2412148254925,34.6815185751075,41.1556214087206,37.7121758664748,28.3004931741001,30.516563543966,15.7186898457737,61.5829047369929,22.6284475413991,28.196623713545,29.976950310728,27.7733353538036,18.4778872390212,16.8074907245642,5.86087236050235,20.5286935227246,21.0796360041813,17.7202404127911,19.4361974188793,12.446550362335,10.0270815831654,30.1420354724105,35.2911784018733,0,21.1325688139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| |||
|short_description=p1@MED6 | |||
}} |
Revision as of 20:51, 11 January 2014
Short description: | p1@MED6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MED6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000256379, ENST00000430055, ENST00000440435, ENST00000553611, ENST00000554870, ENST00000554963, ENST00000556044, ENST00000556423, ENST00000556495, NM_005466, uc001xmf.2, uc001xmg.1, uc010tth.1, uc010tti.1, uc010ttj.1_5end |
EntrezGene: | MED6 |
HGNC: | 19970 |
UniProt: | O75586B4DU17B4E2P0G3V4A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.98e-24 | 136 |
nongranular leukocyte | 7.30e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 2.28e-20 | 120 |
hematopoietic stem cell | 1.79e-18 | 168 |
hematopoietic oligopotent progenitor cell | 1.03e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.03e-16 | 161 |
lymphocyte | 1.04e-16 | 53 |
common lymphoid progenitor | 1.04e-16 | 53 |
hematopoietic cell | 1.61e-16 | 177 |
lymphoid lineage restricted progenitor cell | 1.93e-16 | 52 |
classical monocyte | 6.67e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.67e-10 | 42 |
T cell | 2.30e-08 | 25 |
pro-T cell | 2.30e-08 | 25 |
myeloid leukocyte | 6.04e-08 | 72 |
lymphocyte of B lineage | 6.38e-08 | 24 |
pro-B cell | 6.38e-08 | 24 |
defensive cell | 8.83e-08 | 48 |
phagocyte | 8.83e-08 | 48 |
mature alpha-beta T cell | 2.62e-07 | 18 |
alpha-beta T cell | 2.62e-07 | 18 |
immature T cell | 2.62e-07 | 18 |
mature T cell | 2.62e-07 | 18 |
immature alpha-beta T cell | 2.62e-07 | 18 |
B cell | 3.97e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 5.31e-11 | 41 |
forebrain | 5.31e-11 | 41 |
anterior neural tube | 5.31e-11 | 41 |
future forebrain | 5.31e-11 | 41 |
neural tube | 8.61e-11 | 56 |
neural rod | 8.61e-11 | 56 |
future spinal cord | 8.61e-11 | 56 |
neural keel | 8.61e-11 | 56 |
regional part of nervous system | 9.57e-11 | 53 |
regional part of brain | 9.57e-11 | 53 |
telencephalon | 1.19e-08 | 34 |
cerebral hemisphere | 1.56e-08 | 32 |
brain grey matter | 2.06e-08 | 34 |
gray matter | 2.06e-08 | 34 |
central nervous system | 3.18e-08 | 81 |
regional part of telencephalon | 3.33e-08 | 32 |
regional part of cerebral cortex | 3.39e-08 | 22 |
nervous system | 6.00e-08 | 89 |
neocortex | 1.76e-07 | 20 |
brain | 9.91e-07 | 68 |
future brain | 9.91e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.83e-08 | 106 |