FFCP PHASE1:Hg19::chr17:42426888..42426897,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2896 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4601 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H8S1 | |||
|association_with_transcript=36bp_to_AK023348_5end | |||
|description=CAGE_peak_13_at_GRN_5end | |||
|id=chr17:42426888..42426897,+ | |||
|ontology_enrichment_celltype=CL:0002194!4.10e-25!63;CL:0000576!4.10e-25!63;CL:0000040!4.10e-25!63;CL:0000559!4.10e-25!63;CL:0002009!1.52e-23!65;CL:0000839!2.03e-23!70;CL:0000557!1.03e-22!71;CL:0000766!1.52e-22!76;CL:0002057!1.03e-19!42;CL:0000860!1.34e-18!45;CL:0000763!1.92e-11!112;CL:0000049!1.92e-11!112;CL:0002371!3.92e-11!591;CL:0000063!5.78e-11!578;CL:0000144!1.38e-10!625;CL:0000548!2.49e-09!679;CL:0000004!2.49e-09!679;CL:0000255!2.49e-09!679;CL:0000012!6.67e-09!682 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.41e-43;33!CL:0002057;2.41e-43;33!CL:0000473;4.06e-40;39!CL:0000234;4.06e-40;39!CL:0000576;2.86e-31;48!CL:0000766;6.71e-18;69!CL:0002619;3.06e-10;3!CL:0002567;4.80e-09;3!CL:0000763;1.20e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.07e-43,48;CL:0000234,3.07e-43,48;CL:0002194,1.60e-41,59;CL:0000576,1.60e-41,59;CL:0000040,1.60e-41,59;CL:0000559,1.60e-41,59;CL:0002009,6.91e-40,61;CL:0000860,1.44e-39,42;CL:0002057,1.44e-39,42;CL:0000839,3.14e-36,66;CL:0000557,1.46e-35,67;CL:0000766,1.66e-32,72;CL:0000763,7.52e-19,108;CL:0000049,7.52e-19,108;CL:0002087,3.40e-17,115;CL:0002031,3.92e-16,120;CL:0000738,2.84e-13,136;CL:0002619,3.01e-10,3;CL:0002032,5.54e-10,161;CL:0000837,5.54e-10,161;CL:0000988,6.32e-10,177;CL:0002320,1.79e-09,361;CL:0000037,3.02e-09,168;CL:0002567,4.46e-09,3;CL:0000134,1.21e-08,354;CL:0000219,1.39e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.67e-28;42!CL:0000049;1.90e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.31e-20!80;UBERON:0001474!1.69e-18!86;UBERON:0004765!2.46e-17!101;UBERON:0001434!2.46e-17!101;UBERON:0002405!4.37e-16!115;UBERON:0002193!2.90e-15!112;UBERON:0002390!3.28e-14!102;UBERON:0003061!3.28e-14!102;UBERON:0003081!7.46e-14!216;UBERON:0000926!2.75e-11!448;UBERON:0004120!2.75e-11!448;UBERON:0006603!2.75e-11!448;UBERON:0002204!4.08e-11!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.38e-30,76;UBERON:0001474,1.66e-27,82;UBERON:0002405,5.79e-25,93;UBERON:0004765,2.63e-24,90;UBERON:0002390,1.24e-21,98;UBERON:0003061,1.24e-21,98;UBERON:0001434,4.96e-21,100;UBERON:0002193,2.75e-20,108;UBERON:0003081,2.46e-13,203;UBERON:0002204,3.81e-10,167;UBERON:0000926,1.21e-09,315;UBERON:0004120,1.21e-09,315;UBERON:0006603,1.21e-09,315;UBERON:0002384,6.90e-09,371;UBERON:0005406,4.89e-07,2 | |||
|phase1_expression=0.726713517082227,0.428201047781966,0.140954404095971,0,2.23480547213644,1.74467704820074,0,0,0,0,0.697801167972428,0.218441372130172,0.263766978228454,0,0.331397375727916,0.672325146451775,0.602694528023977,0,0,0,0.408001382488506,0.940364164434263,0,0,0,0.0764134057479513,0,0,0.393364276848904,0,0.464448369948228,0,0.90361775633475,0.739508020333575,0.154934401160603,0,0,0,0.200544447470142,0.434021741431704,9.40444991807682,4.53451132426571,2.31818010870768,2.4717700592526,1.51150377475524,2.42584061187816,1.62700325833979,2.46700732813095,3.40677007984614,2.01384674625505,0.256160706529101,0.709446689665756,1.37898272294647,1.93645405075148,4.06279459783025,4.32957380947991,5.18521685109907,1.34834090667051,3.06083892370903,1.28371610830437,1.91801137739712,2.63881040149373,1.39624560335142,3.83602275479425,2.03146467040009,1.70215567407342,0.622822248995575,1.00499466102697,1.0429658368404,0.65156653411535,0,0,0.632924774881769,1.05627643155971,0.212604299965044,0.838634582033504,1.46027220490444,1.65194582125657,0.64290234678832,0,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.334231370655521,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.434539556882471,0,0,0.0945348171640679,0,0.351339142772504,0.0654895377488563,0,0,0.97364218096405,0.522389211897802,0.664789802594326,0.238490624305342,0,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0.208994966536811,0.775250277507987,0.71153252537342,0.33472061276467,2.81980521976403,0.760272105718513,1.70843440283719,0,0.81014194788176,0.17859945656816,0,0,0,0,0.549605231791222,0,0,0,0,0.379891534993739,0.132409180813219,6.88407889797153,0.709336764396714,0.560677600142307,0,0.74000264525148,0,0.942974704487816,0.490385709340376,0.151357427644931,0,0,0.312160076830321,0,0,0.117434498643765,0.161872944368132,0,0,0,0.103325781175765,1.18800285728205,2.47266929278557,0,1.43723628363248,0,0,0.277064115484183,0,0,0.751190294532984,0,0.358779271377724,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0,0.337552664482532,0.0974370051611986,0.504867548488229,0,0.484938170456436,0,0.201504196455281,0,0,0.818238361772504,0.286804595389004,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0.721879481669586,0.118306800039844,0.168584690078102,0,0.110293972732394,0.217879444092406,0,0.269662616320329,0.196221465125346,0.38474715694639,0,0,0,0,0,0,1.18157981336281,0,0,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0.144366447761074,0,0.380508304469197,0.790204397959275,0,0.984868024349589,0.468008530278475,0.891786973732369,0,0.671928512795438,0.141775097242386,0.0895585227028483,0,0,0,0.088048434013226,0.414656231081544,0.288239906833923,0.25248486685276,0,2.29193055334967,1.17217447210047,1.71072446022705,0.822619941626588,0.300343057843917,0.571652865261156,0,0.43596006883328,0,0.387815147273333,7.15312891703765,0,0.797814349754612,2.08014873822732,0.257207374262142,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0.199945982364114,3.64871341923571,2.51128545716063,2.10833939483032,0.718874566474748,0,0,0.144781306667579,0.205476322550383,0.537182889719687,0.112085143993527,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0.535286966391485,0.315404830067869,0.35142424497814,0,2.27407504055985,0,0,0.184369168541703,0.347534457872331,1.17480694477644,1.71571711905428,0,0,0,0,1.66435439510497,0.30239029332968,0.992431231275107,0,1.12264037773229,0.384417447767103,0,0,2.96836132889982,0,0.177561725313127,0.0821271560138091,0.519254429183621,0,0.362578348774867,1.20303882181971,1.01289087829486,0.114814448164607,0.182091168006717,1.31124414959424,0,0.0770153371044148,0,1.46139224653261,0.105551628892876,0,0.510281115829547,0,1.54227252690289,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0.984043937099117,0.325378394664303,0.515205058238611,0,0,0,1.95018073810956,0,0,0.154048617114644,0.307007349452259,0,0,0,0.0852266274161009,0,0.165284915360978,0.768760269460425,0.255225424989168,0.6069466851333,0.464845549297286,1.25924938732256,0,0,0,0,0.37064843820784,0.143124886741991,0,0,0.571890581771475,0.255897791311334,0.42793898803392,0,0,0.179872457583315,0.54907405947211,0.117812402345686,0.404364963146632,0,0,0,0.243713489631284,0,0.272999822815972,0.848432591722276,0,0.551365343546124,0,0,0,0.655894752046633,0,0,0,0,0.0982490410131212,0,0,0.844430541190656,0.329294892959902,0,0,0.0962221127255121,0.670302275535787,1.08890984861323,0.188287601553558,0.43050537267123,0,0.886860307073351,0,0,0,0,0,0,0.648473311192717,0,0.79312517629427,0.427296284509893,0,0,0,0,0,0,0,0.191505370132367,0,0,0.842391534340376,0,0,0,0,0.321176150207399,0.201799707191048,0,0,0,0.223676107892416,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,2.07875276582847,0.614321404198464,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,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| |||
|short_description=p13@GRN | |||
}} |
Revision as of 15:40, 20 January 2014
Short description: | p13@GRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_GRN_5end |
Coexpression cluster: | NA |
Association with transcript: | 36bp_to_AK023348_5end |
EntrezGene: | GRN |
HGNC: | 4601 |
UniProt: | Q9H8S1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.07e-43 | 48 |
phagocyte | 3.07e-43 | 48 |
monopoietic cell | 1.60e-41 | 59 |
monocyte | 1.60e-41 | 59 |
monoblast | 1.60e-41 | 59 |
promonocyte | 1.60e-41 | 59 |
macrophage dendritic cell progenitor | 6.91e-40 | 61 |
classical monocyte | 1.44e-39 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.44e-39 | 42 |
myeloid lineage restricted progenitor cell | 3.14e-36 | 66 |
granulocyte monocyte progenitor cell | 1.46e-35 | 67 |
myeloid leukocyte | 1.66e-32 | 72 |
myeloid cell | 7.52e-19 | 108 |
common myeloid progenitor | 7.52e-19 | 108 |
nongranular leukocyte | 3.40e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 3.92e-16 | 120 |
leukocyte | 2.84e-13 | 136 |
adult endothelial progenitor cell | 3.01e-10 | 3 |
hematopoietic oligopotent progenitor cell | 5.54e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.54e-10 | 161 |
hematopoietic cell | 6.32e-10 | 177 |
connective tissue cell | 1.79e-09 | 361 |
hematopoietic stem cell | 3.02e-09 | 168 |
light melanocyte | 4.46e-09 | 3 |
mesenchymal cell | 1.21e-08 | 354 |
motile cell | 1.39e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.38e-30 | 76 |
bone element | 1.66e-27 | 82 |
immune system | 5.79e-25 | 93 |
skeletal element | 2.63e-24 | 90 |
hematopoietic system | 1.24e-21 | 98 |
blood island | 1.24e-21 | 98 |
skeletal system | 4.96e-21 | 100 |
hemolymphoid system | 2.75e-20 | 108 |
lateral plate mesoderm | 2.46e-13 | 203 |
musculoskeletal system | 3.81e-10 | 167 |
mesoderm | 1.21e-09 | 315 |
mesoderm-derived structure | 1.21e-09 | 315 |
presumptive mesoderm | 1.21e-09 | 315 |
connective tissue | 6.90e-09 | 371 |
perirenal fat | 4.89e-07 | 2 |