FFCP PHASE1:Hg19::chr2:173724876..173724893,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11069 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16626 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z283 | |||
|association_with_transcript=73bp_to_ENST00000540783,uc010zec.1,uc010zed.1_5end | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_16_at_RAPGEF4_5end | |||
|id=chr2:173724876..173724893,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000511;4.10e-23;1!CL:0002625;4.10e-23;1!CL:0000216;4.10e-23;1!CL:0000746;9.66e-09;3!CL:0000737;7.27e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,2.62e-23,1;CL:0002625,2.62e-23,1;CL:0000216,2.62e-23,1;CL:0000746,1.04e-08,3;CL:0000513,1.04e-08,3;CL:0000737,7.70e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000513;9.66e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;2.90e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.24e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.96e-36!57;UBERON:0005068!4.96e-36!57;UBERON:0006241!4.96e-36!57;UBERON:0007135!4.96e-36!57;UBERON:0002780!7.44e-31!41;UBERON:0001890!7.44e-31!41;UBERON:0006240!7.44e-31!41;UBERON:0003080!6.14e-30!42;UBERON:0007023!5.47e-29!115;UBERON:0001017!3.25e-28!82;UBERON:0002616!4.13e-28!59;UBERON:0005743!4.40e-28!86;UBERON:0001893!5.26e-27!34;UBERON:0002020!8.75e-27!34;UBERON:0003528!8.75e-27!34;UBERON:0003075!1.64e-26!86;UBERON:0007284!1.64e-26!86;UBERON:0000073!4.72e-26!94;UBERON:0001016!4.72e-26!94;UBERON:0000955!7.28e-26!69;UBERON:0006238!7.28e-26!69;UBERON:0002791!2.75e-25!33;UBERON:0002346!7.84e-25!90;UBERON:0001869!9.00e-24!32;UBERON:0002619!8.97e-21!22;UBERON:0000956!4.62e-20!25;UBERON:0000203!4.62e-20!25;UBERON:0003056!7.43e-20!61;UBERON:0001950!3.16e-17!20;UBERON:0000025!6.62e-15!194;UBERON:0000033!3.26e-13!123;UBERON:0000153!4.99e-13!129;UBERON:0007811!4.99e-13!129;UBERON:0004121!1.06e-12!169;UBERON:0000924!3.83e-12!173;UBERON:0006601!3.83e-12!173;UBERON:0000349!4.11e-12!5;UBERON:0004111!4.22e-12!241;UBERON:0001871!3.42e-10!7;UBERON:0000200!1.61e-09!6;UBERON:0000477!3.26e-09!286;UBERON:0002298!8.63e-09!8;UBERON:0002420!1.27e-08!9;UBERON:0007245!1.27e-08!9;UBERON:0010009!1.27e-08!9;UBERON:0010011!1.27e-08!9;UBERON:0000454!1.27e-08!9;UBERON:0002308!3.84e-08!9;UBERON:0000125!3.84e-08!9;UBERON:0000119!6.74e-08!312;UBERON:0002771!1.16e-07!3;UBERON:0000483!1.42e-07!309;UBERON:0003076!1.79e-07!15;UBERON:0003057!1.79e-07!15;UBERON:0006331!4.93e-07!3;UBERON:0002240!7.59e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001876;9.78e-45;2!UBERON:0000349;5.68e-40;5!UBERON:0001136;4.10e-23;1!UBERON:0001343;4.10e-23;1!UBERON:0004910;4.10e-23;1!UBERON:0004813;4.10e-23;1!UBERON:0002619;1.15e-15;22!UBERON:0000956;6.52e-14;25!UBERON:0000203;6.52e-14;25!UBERON:0001871;1.40e-13;6!UBERON:0001905;1.85e-12;2!UBERON:0002757;1.85e-12;2!UBERON:0010134;1.85e-12;2!UBERON:0005408;1.85e-12;2!UBERON:0001899;1.85e-12;2!UBERON:0001954;2.90e-12;2!UBERON:0003022;2.90e-12;2!UBERON:0004909;2.90e-12;2!UBERON:0002421;2.90e-12;2!UBERON:0002600;2.90e-12;2!UBERON:0002780;1.11e-11;41!UBERON:0001890;1.11e-11;41!UBERON:0002791;8.58e-11;32!UBERON:0001869;8.58e-11;32!UBERON:0002420;8.79e-11;9!UBERON:0007245;8.79e-11;9!UBERON:0010009;8.79e-11;9!UBERON:0010011;8.79e-11;9!UBERON:0000454;8.79e-11;9!UBERON:0003528;1.19e-10;34!UBERON:0002020;1.19e-10;34!UBERON:0001950;4.30e-10;20!UBERON:0001893;8.08e-10;34!UBERON:0001870;1.30e-08;3!UBERON:0003296;7.27e-07;4!UBERON:0010133;7.27e-07;4!UBERON:0002784;7.27e-07;4!UBERON:0005904;9.10e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001876,7.83e-45,2;UBERON:0000349,4.35e-40,5;UBERON:0001136,2.62e-23,1;UBERON:0001343,2.62e-23,1;UBERON:0004910,2.62e-23,1;UBERON:0005154,2.62e-23,1;UBERON:0005295,2.62e-23,1;UBERON:0004813,2.62e-23,1;UBERON:0005297,2.62e-23,1;UBERON:0005294,2.62e-23,1;UBERON:0010141,2.62e-23,1;UBERON:0005891,2.62e-23,1;UBERON:0002619,1.15e-15,22;UBERON:0000956,6.52e-14,25;UBERON:0000203,6.52e-14,25;UBERON:0001871,1.31e-13,6;UBERON:0002780,2.77e-13,41;UBERON:0001890,2.77e-13,41;UBERON:0003080,2.77e-13,41;UBERON:0006240,2.77e-13,41;UBERON:0001905,1.85e-12,2;UBERON:0002757,1.85e-12,2;UBERON:0010134,1.85e-12,2;UBERON:0005408,1.85e-12,2;UBERON:0001899,1.85e-12,2;UBERON:0004909,2.32e-12,2;UBERON:0001954,2.59e-12,2;UBERON:0003022,2.59e-12,2;UBERON:0002421,2.59e-12,2;UBERON:0002600,2.59e-12,2;UBERON:0002791,4.75e-11,32;UBERON:0001869,4.75e-11,32;UBERON:0002420,8.37e-11,9;UBERON:0007245,8.37e-11,9;UBERON:0010009,8.37e-11,9;UBERON:0010011,8.37e-11,9;UBERON:0000454,8.37e-11,9;UBERON:0003528,1.93e-10,34;UBERON:0002020,1.93e-10,34;UBERON:0001893,1.93e-10,34;UBERON:0000073,2.26e-10,53;UBERON:0002616,2.26e-10,53;UBERON:0001950,4.44e-10,20;UBERON:0001049,7.80e-10,56;UBERON:0005068,7.80e-10,56;UBERON:0006241,7.80e-10,56;UBERON:0007135,7.80e-10,56;UBERON:0003056,4.72e-09,61;UBERON:0001016,1.23e-08,89;UBERON:0001870,1.51e-08,3;UBERON:0000955,4.96e-08,68;UBERON:0006238,4.96e-08,68;UBERON:0010371,1.62e-07,104;UBERON:0003296,7.27e-07,4;UBERON:0010133,7.27e-07,4;UBERON:0002784,7.27e-07,4;UBERON:0005904,8.14e-07,4;UBERON:0001017,8.73e-07,81;UBERON:0003075,8.73e-07,82;UBERON:0007284,8.73e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622422070799533,0,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0.300343057843917,0.285826432630578,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98244294329889,1.54736358051564,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.463840490809256,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.241192877250816,0,0,0,0.658156191461918,0,0.41827123283581,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.539209063845416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387025325156341,0.0730893170861856,0.0821154570532092,0,0,0,0,0,1.07628353124994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0.0984274815147488,0.169346664131569,1.59045937961861,0.681017030557878,0,0,0,0,0,0.789744236554321,0,0,0.157363764404994,0,0.717149357331379,0,0,0,0,0,0,0,0,0,0,0.79318464064088,0,0,0.258565912723101,0.66116300871345,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0.976210119215705,0.625954653532499,0,0.665574309221114,0.248385611765534,0,0,1.21319294033318,0,0,0,0,0,0,0,0,0,0,0,0.453692771289717,0,0,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0,0.219284049578707,0.353378291891762,0,0,0,0,0,0.691292180758654,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,9.28281924632118,0,0,0,0,0,0,0.80057074828547,0,0,0.770750701157514,0,0.159633859057151,0.205116364240755,0,0.414943514785307,0.807378228159255,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0,0,0.742913430802341,0,0.206686796501184,0.380494861163441,0,0,0.496211178389294,0,0.127762427639595,2.67850917939143,0.672567444437648,0,0.455324382702595,0.0887023701626388,0,0,0.135939465953663,0.460409414939944,0,0,0,0.785577949580009,0,0.913158720509496,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0.0771741581079447,0.218559560503957,0,0.245148321753905,0.942706188406504,0.392616934229891,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0.430018749454354,0,0.679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413731983447581,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p16@RAPGEF4 | |||
}} |
Revision as of 06:38, 21 January 2014
Short description: | p16@RAPGEF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RAPGEF4_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | 73bp_to_ENST00000540783, uc010zec.1, uc010zed.1_5end |
EntrezGene: | RAPGEF4 |
HGNC: | 16626 |
UniProt: | B7Z283 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 2.62e-23 | 1 |
seminiferous tubule epithelial cell | 2.62e-23 | 1 |
Sertoli cell | 2.62e-23 | 1 |
cardiac muscle cell | 1.04e-08 | 3 |
cardiac muscle myoblast | 1.04e-08 | 3 |
striated muscle cell | 7.70e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.24e-12 | 2 |