FFCP PHASE1:Mm9::chr11:51449557..51449578,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2679|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:51449557..51449578,+|id=chr11:51449557..51449578,+|ontology_enrichment_celltype=CL:0000838!1.33e-09!12;CL:0000084!9.65e-09!11;CL:0000827!9.65e-09!11;CL:0000542!1.88e-08!13;CL:0000051!1.88e-08!13;CL:0000791!2.29e-07!9;CL:0000789!2.29e-07!9;CL:0002420!2.29e-07!9;CL:0002419!2.29e-07!9;CL:0000790!2.29e-07!9|ontology_enrichment_celltype_v019_2=CL:0000838,6.09e-12,12;CL:0000624,1.64e-11,8;CL:0000542,5.08e-11,13;CL:0000051,5.08e-11,13;CL:0000791,2.91e-10,9;CL:0000789,2.91e-10,9;CL:0002420,2.91e-10,9;CL:0002419,2.91e-10,9;CL:0000790,2.91e-10,9;CL:0000034,1.03e-08,97;CL:0000084,1.94e-08,11;CL:0000827,1.94e-08,11;CL:0000738,2.07e-08,17;CL:0002087,2.07e-08,17;CL:0000988,2.87e-08,32;CL:0002032,2.87e-08,32;CL:0000037,2.87e-08,32;CL:0000837,2.87e-08,32;CL:0000945,1.38e-07,1;CL:0000236,1.38e-07,1;CL:0000826,1.38e-07,1;CL:0002320,2.99e-07,46;CL:0000134,2.99e-07,46;CL:0000213,3.20e-07,1;CL:0002078,3.20e-07,1;CL:0000115,3.20e-07,1;CL:0002262,3.20e-07,1;CL:1000398,3.20e-07,1;CL:0000815,4.83e-07,1;CL:0000792,4.83e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,4.51e-09,3;DOID:4045,4.51e-09,3|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.99e-07,46;UBERON:0002394,3.20e-07,1;UBERON:0001281,3.20e-07,1;UBERON:0000353,3.20e-07,1;UBERON:0003497,3.20e-07,1;UBERON:0003909,3.20e-07,1;UBERON:0003928,3.20e-07,1;UBERON:0003835,3.20e-07,1;UBERON:0003513,3.20e-07,1;UBERON:0001280,3.20e-07,1;UBERON:0004647,3.20e-07,1;UBERON:0002294,3.20e-07,1;UBERON:0001173,3.20e-07,1;UBERON:0004912,3.20e-07,1;UBERON:0005171,3.20e-07,1|phase1_expression=0,0.348975407639361,0,0.30246421130683,0,0.16787927191189,0.467225281191051,1.67860320474049,1.12630977721333,0.70219357896598,0.68487187290202,0.159544317990673,1.02720437958723,0.961624426608971,0,0,0,0.473193248037357,0.411343300817216,0,0.0850432901510698,0.893618560807968,0.522399578277871,0.159992422793407,0.22940928106717,0,0,0,0,0.252030129759931,0,0.635030673459631,0,0,0.577703239502549,0,0,2.51118978442145,0,3.14114246384279,7.05877785637217,0.683045484958446,1.94204141212461,0.377690453926732,0.202753862439029,0,0,0,0,0,0,0,5.87239121202077,1.45072428402269,0.672187598284928,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0.122490799214954,0,0,0,0.127687338085188,0.614426133024974,0,0.0914876436024097,0,0.279182999001381,0,0.61119299110724,0,0.284743361598206,0.186399445825301,0.075726193333184,0,2.02905142091174,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0.150722640552623,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,1.55759661857696,2.39961092397363,0.508280908292259,0.149790639404823,0.457500602818626,0,0.173824320192276,0.511430914660661,0.20778804455956,0,0,0.124406970610093,0.505445516867349,0,0,0,0.180062129805349,0,0.204109497453984,0.384341160854549,0.187403449119458,0.517406741478031,0,0,0,0,0,0,0.205782136407943,0.199034266818493,0,0.257347907114715,0.284163499395593,0,0,0.180062061461015,0.23674473558521,0,0.154267112887378,0,0,0,0,0,0.162137619091711,0.146199987425332,0,0.134206418760372,0.841159794256509,0,0,0,0,0,0,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0,0.189667900953082,0.114248512609729,0,0.203651327845314,0.193952487167626,0.210407459670956,0.126473074248515,0.147610147979602,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0.624075346229121,0,0.179397413521912,0,0.184753190166605,0,0,0.169745085775188,0.234690248288502,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0.252470927204373,0,0,0.215423397732799,0.238968797952552,0,0.283076530788832,0.404810701674894,0,0,0.321321316421807,0,0.178065603667255,0,0,0,0.242780636154981,0.302323556964751,0,0,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0,0.388076051348264,0.214337035031592,0,0.535106452806212,0.493647061806363,0.304464949114599,0,0.42366414172764,0.220528398054962,0.32977250588296,0,0.180938774784468,0.119372344003136,0,0,0.18542530201051,0,0,0.185194527369712,0,0.27338845544205,0.228778173206523,2.71965487990169,5.318155188299,1.93479963326193,0,0.158167996790568,0,0.216010681643603,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0,0.299033092087958,0,0.388902376688095,0.129159823477731,0.337912250981556,0.234714477291508,0.13020438484395,0.104859344425711,0,0.288030006257865,0.316011120628178,0.405450430580328,0.102710957164827,0.129920822977795,0.358053391334963,0.198681354781265,0.120195449519969,0.295379054349154,0.302899349844443,0,0.100826185136841,0,0,0.233753804363138,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0.170733605754134,0,0,0,0,0,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0.135804113845862,0.561142271657738,0,0,0,0,0.192906610981141,0,0,0,0,0,0|short_description=p@chr11:51449557..51449578,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2679 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr11:51449557..51449578,+ | |||
|description=CAGE_peak_at_chr11:51449557..51449578,+ | |||
|id=chr11:51449557..51449578,+ | |||
|ontology_enrichment_celltype=CL:0000838!1.33e-09!12;CL:0000084!9.65e-09!11;CL:0000827!9.65e-09!11;CL:0000542!1.88e-08!13;CL:0000051!1.88e-08!13;CL:0000791!2.29e-07!9;CL:0000789!2.29e-07!9;CL:0002420!2.29e-07!9;CL:0002419!2.29e-07!9;CL:0000790!2.29e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,6.09e-12,12;CL:0000624,1.64e-11,8;CL:0000542,5.08e-11,13;CL:0000051,5.08e-11,13;CL:0000791,2.91e-10,9;CL:0000789,2.91e-10,9;CL:0002420,2.91e-10,9;CL:0002419,2.91e-10,9;CL:0000790,2.91e-10,9;CL:0000034,1.03e-08,97;CL:0000084,1.94e-08,11;CL:0000827,1.94e-08,11;CL:0000738,2.07e-08,17;CL:0002087,2.07e-08,17;CL:0000988,2.87e-08,32;CL:0002032,2.87e-08,32;CL:0000037,2.87e-08,32;CL:0000837,2.87e-08,32;CL:0000945,1.38e-07,1;CL:0000236,1.38e-07,1;CL:0000826,1.38e-07,1;CL:0002320,2.99e-07,46;CL:0000134,2.99e-07,46;CL:0000213,3.20e-07,1;CL:0002078,3.20e-07,1;CL:0000115,3.20e-07,1;CL:0002262,3.20e-07,1;CL:1000398,3.20e-07,1;CL:0000815,4.83e-07,1;CL:0000792,4.83e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,4.51e-09,3;DOID:4045,4.51e-09,3 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.99e-07,46;UBERON:0002394,3.20e-07,1;UBERON:0001281,3.20e-07,1;UBERON:0000353,3.20e-07,1;UBERON:0003497,3.20e-07,1;UBERON:0003909,3.20e-07,1;UBERON:0003928,3.20e-07,1;UBERON:0003835,3.20e-07,1;UBERON:0003513,3.20e-07,1;UBERON:0001280,3.20e-07,1;UBERON:0004647,3.20e-07,1;UBERON:0002294,3.20e-07,1;UBERON:0001173,3.20e-07,1;UBERON:0004912,3.20e-07,1;UBERON:0005171,3.20e-07,1 | |||
|phase1_expression=0,0.348975407639361,0,0.30246421130683,0,0.16787927191189,0.467225281191051,1.67860320474049,1.12630977721333,0.70219357896598,0.68487187290202,0.159544317990673,1.02720437958723,0.961624426608971,0,0,0,0.473193248037357,0.411343300817216,0,0.0850432901510698,0.893618560807968,0.522399578277871,0.159992422793407,0.22940928106717,0,0,0,0,0.252030129759931,0,0.635030673459631,0,0,0.577703239502549,0,0,2.51118978442145,0,3.14114246384279,7.05877785637217,0.683045484958446,1.94204141212461,0.377690453926732,0.202753862439029,0,0,0,0,0,0,0,5.87239121202077,1.45072428402269,0.672187598284928,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0.122490799214954,0,0,0,0.127687338085188,0.614426133024974,0,0.0914876436024097,0,0.279182999001381,0,0.61119299110724,0,0.284743361598206,0.186399445825301,0.075726193333184,0,2.02905142091174,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0.150722640552623,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,1.55759661857696,2.39961092397363,0.508280908292259,0.149790639404823,0.457500602818626,0,0.173824320192276,0.511430914660661,0.20778804455956,0,0,0.124406970610093,0.505445516867349,0,0,0,0.180062129805349,0,0.204109497453984,0.384341160854549,0.187403449119458,0.517406741478031,0,0,0,0,0,0,0.205782136407943,0.199034266818493,0,0.257347907114715,0.284163499395593,0,0,0.180062061461015,0.23674473558521,0,0.154267112887378,0,0,0,0,0,0.162137619091711,0.146199987425332,0,0.134206418760372,0.841159794256509,0,0,0,0,0,0,0.201683524623343,0.22237804384487,0,0,0.164698954724011,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0,0.189667900953082,0.114248512609729,0,0.203651327845314,0.193952487167626,0.210407459670956,0.126473074248515,0.147610147979602,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0.624075346229121,0,0.179397413521912,0,0.184753190166605,0,0,0.169745085775188,0.234690248288502,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0.252470927204373,0,0,0.215423397732799,0.238968797952552,0,0.283076530788832,0.404810701674894,0,0,0.321321316421807,0,0.178065603667255,0,0,0,0.242780636154981,0.302323556964751,0,0,0,0.258428293168221,0,0,0,0,0,0.680879211507576,0,0.388076051348264,0.214337035031592,0,0.535106452806212,0.493647061806363,0.304464949114599,0,0.42366414172764,0.220528398054962,0.32977250588296,0,0.180938774784468,0.119372344003136,0,0,0.18542530201051,0,0,0.185194527369712,0,0.27338845544205,0.228778173206523,2.71965487990169,5.318155188299,1.93479963326193,0,0.158167996790568,0,0.216010681643603,0.209088296014469,0.218362563746178,0,0.0826534557253359,0,0,0,0,0.299033092087958,0,0.388902376688095,0.129159823477731,0.337912250981556,0.234714477291508,0.13020438484395,0.104859344425711,0,0.288030006257865,0.316011120628178,0.405450430580328,0.102710957164827,0.129920822977795,0.358053391334963,0.198681354781265,0.120195449519969,0.295379054349154,0.302899349844443,0,0.100826185136841,0,0,0.233753804363138,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0.170733605754134,0,0,0,0,0,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0.135804113845862,0.561142271657738,0,0,0,0,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p@chr11:51449557..51449578,+ | |||
}} |
Latest revision as of 00:44, 6 August 2015
Short description: | p@chr11:51449557..51449578, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:51449557..51449578, + |
Coexpression cluster: | MCL_coexpression_mm9:2679 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 6.09e-12 | 12 |
CD4-positive, alpha-beta T cell | 1.64e-11 | 8 |
lymphocyte | 5.08e-11 | 13 |
common lymphoid progenitor | 5.08e-11 | 13 |
mature alpha-beta T cell | 2.91e-10 | 9 |
alpha-beta T cell | 2.91e-10 | 9 |
immature T cell | 2.91e-10 | 9 |
mature T cell | 2.91e-10 | 9 |
immature alpha-beta T cell | 2.91e-10 | 9 |
stem cell | 1.03e-08 | 97 |
T cell | 1.94e-08 | 11 |
pro-T cell | 1.94e-08 | 11 |
leukocyte | 2.07e-08 | 17 |
nongranular leukocyte | 2.07e-08 | 17 |
hematopoietic cell | 2.87e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.87e-08 | 32 |
hematopoietic stem cell | 2.87e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.87e-08 | 32 |
lymphocyte of B lineage | 1.38e-07 | 1 |
B cell | 1.38e-07 | 1 |
pro-B cell | 1.38e-07 | 1 |
connective tissue cell | 2.99e-07 | 46 |
mesenchymal cell | 2.99e-07 | 46 |
lining cell | 3.20e-07 | 1 |
meso-epithelial cell | 3.20e-07 | 1 |
endothelial cell | 3.20e-07 | 1 |
endothelial cell of sinusoid | 3.20e-07 | 1 |
endothelial cell of hepatic sinusoid | 3.20e-07 | 1 |
regulatory T cell | 4.83e-07 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.83e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.99e-07 | 46 |
bile duct | 3.20e-07 | 1 |
hepatic sinusoid | 3.20e-07 | 1 |
parenchyma | 3.20e-07 | 1 |
abdomen blood vessel | 3.20e-07 | 1 |
sinusoid | 3.20e-07 | 1 |
digestive system duct | 3.20e-07 | 1 |
abdominal segment blood vessel | 3.20e-07 | 1 |
trunk blood vessel | 3.20e-07 | 1 |
liver parenchyma | 3.20e-07 | 1 |
liver lobule | 3.20e-07 | 1 |
biliary system | 3.20e-07 | 1 |
biliary tree | 3.20e-07 | 1 |
biliary bud | 3.20e-07 | 1 |
hepatic duct | 3.20e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 4.51e-09 | 3 |
muscle cancer | 4.51e-09 | 3 |