FFCP PHASE1:Hg19::chr3:11314072..11314098,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10533 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16935 | |||
|TSSclassifier=strong | |||
|UniProt=F8WDY9,C9JKA3 | |||
|association_with_transcript=0bp_to_ENST00000418682,ENST00000444619_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_ATG7_5end | |||
|id=chr3:11314072..11314098,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.30e-33!76;CL:0002009!1.47e-29!65;CL:0000557!1.85e-29!71;CL:0000839!1.36e-28!70;CL:0002194!1.37e-28!63;CL:0000576!1.37e-28!63;CL:0000040!1.37e-28!63;CL:0000559!1.37e-28!63;CL:0002057!2.93e-26!42;CL:0000763!2.83e-23!112;CL:0000049!2.83e-23!112;CL:0000860!2.35e-22!45;CL:0000738!3.57e-19!140;CL:0002031!2.41e-14!124;CL:0000037!4.35e-14!172;CL:0000566!4.35e-14!172;CL:0000988!6.72e-14!182;CL:0002087!1.31e-13!119;CL:0002032!3.65e-13!165;CL:0000837!3.65e-13!165;CL:0000048!6.67e-12!430;CL:0000723!1.20e-11!436;CL:0000034!2.49e-10!444;CL:0000134!1.04e-09!358;CL:0002320!7.89e-09!365;CL:0002393!9.91e-07!9;CL:0002397!9.91e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.39e-19;39!CL:0000234;3.39e-19;39!CL:0000860;3.44e-19;33!CL:0002057;3.44e-19;33!CL:0000576;9.98e-19;48!CL:0000766;4.24e-16;69!CL:0000763;3.76e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.13e-37,72;CL:0002009,2.08e-34,61;CL:0000557,5.38e-34,67;CL:0002194,1.95e-33,59;CL:0000576,1.95e-33,59;CL:0000040,1.95e-33,59;CL:0000559,1.95e-33,59;CL:0000839,4.40e-33,66;CL:0000473,5.35e-30,48;CL:0000234,5.35e-30,48;CL:0000860,2.93e-26,42;CL:0002057,2.93e-26,42;CL:0000763,4.16e-26,108;CL:0000049,4.16e-26,108;CL:0000738,2.39e-21,136;CL:0002031,2.75e-16,120;CL:0000037,1.12e-15,168;CL:0002087,1.56e-15,115;CL:0000988,1.91e-15,177;CL:0002032,1.00e-14,161;CL:0000837,1.00e-14,161;CL:0000048,2.05e-12,427;CL:0000723,3.78e-12,433;CL:0000034,8.47e-11,441;CL:0000134,2.25e-10,354;CL:0002320,1.88e-09,361;CL:0000219,9.46e-07,386;CL:0002393,9.91e-07,9;CL:0002397,9.91e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;4.92e-19;42!CL:0000049;1.18e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.38e-31!112;UBERON:0002390!4.56e-31!102;UBERON:0003061!4.56e-31!102;UBERON:0002371!9.36e-27!80;UBERON:0003081!3.12e-23!216;UBERON:0001474!4.08e-22!86;UBERON:0002405!2.92e-19!115;UBERON:0004765!3.98e-17!101;UBERON:0001434!3.98e-17!101;UBERON:0002204!4.15e-16!167;UBERON:0002384!1.06e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.76e-35,108;UBERON:0002390,1.02e-34,98;UBERON:0003061,1.02e-34,98;UBERON:0002371,1.18e-30,76;UBERON:0002405,4.40e-30,93;UBERON:0003081,2.73e-26,203;UBERON:0001474,2.23e-25,82;UBERON:0004765,3.57e-21,90;UBERON:0001434,8.19e-18,100;UBERON:0000926,1.98e-16,315;UBERON:0004120,1.98e-16,315;UBERON:0006603,1.98e-16,315;UBERON:0002204,2.92e-16,167;UBERON:0002384,2.85e-08,371 | |||
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| |||
|short_description=p1@ATG7 | |||
}} |
Revision as of 17:22, 21 January 2014
Short description: | p1@ATG7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATG7_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000418682, ENST00000444619_5end |
EntrezGene: | ATG7 |
HGNC: | 16935 |
UniProt: | F8WDY9C9JKA3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.13e-37 | 72 |
macrophage dendritic cell progenitor | 2.08e-34 | 61 |
granulocyte monocyte progenitor cell | 5.38e-34 | 67 |
monopoietic cell | 1.95e-33 | 59 |
monocyte | 1.95e-33 | 59 |
monoblast | 1.95e-33 | 59 |
promonocyte | 1.95e-33 | 59 |
myeloid lineage restricted progenitor cell | 4.40e-33 | 66 |
defensive cell | 5.35e-30 | 48 |
phagocyte | 5.35e-30 | 48 |
classical monocyte | 2.93e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.93e-26 | 42 |
myeloid cell | 4.16e-26 | 108 |
common myeloid progenitor | 4.16e-26 | 108 |
leukocyte | 2.39e-21 | 136 |
hematopoietic lineage restricted progenitor cell | 2.75e-16 | 120 |
hematopoietic stem cell | 1.12e-15 | 168 |
nongranular leukocyte | 1.56e-15 | 115 |
hematopoietic cell | 1.91e-15 | 177 |
hematopoietic oligopotent progenitor cell | 1.00e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.00e-14 | 161 |
multi fate stem cell | 2.05e-12 | 427 |
somatic stem cell | 3.78e-12 | 433 |
stem cell | 8.47e-11 | 441 |
mesenchymal cell | 2.25e-10 | 354 |
connective tissue cell | 1.88e-09 | 361 |
motile cell | 9.46e-07 | 386 |
intermediate monocyte | 9.91e-07 | 9 |
CD14-positive, CD16-positive monocyte | 9.91e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.76e-35 | 108 |
hematopoietic system | 1.02e-34 | 98 |
blood island | 1.02e-34 | 98 |
bone marrow | 1.18e-30 | 76 |
immune system | 4.40e-30 | 93 |
lateral plate mesoderm | 2.73e-26 | 203 |
bone element | 2.23e-25 | 82 |
skeletal element | 3.57e-21 | 90 |
skeletal system | 8.19e-18 | 100 |
mesoderm | 1.98e-16 | 315 |
mesoderm-derived structure | 1.98e-16 | 315 |
presumptive mesoderm | 1.98e-16 | 315 |
musculoskeletal system | 2.92e-16 | 167 |
connective tissue | 2.85e-08 | 371 |