FFCP PHASE1:Hg19::chr4:160264133..160264142,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=9693 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16854 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-303bp_to_ENST00000502485_5end | |||
|description=CAGE_peak_13_at_RAPGEF2_5end | |||
|id=chr4:160264133..160264142,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.07e-11!42;CL:0000860!5.27e-11!45 | |||
|ontology_enrichment_celltype_v019=CL:0000775;2.42e-15;3!CL:0000860;9.04e-14;33!CL:0002057;9.04e-14;33!CL:0000094;1.15e-12;8!CL:0000511;1.13e-11;1!CL:0002625;1.13e-11;1!CL:0002174;1.13e-11;1!CL:0000216;1.13e-11;1!CL:0000501;1.13e-11;1!CL:0000473;3.24e-11;39!CL:0000234;3.24e-11;39!CL:0000081;2.34e-09;11!CL:0000763;9.61e-08;100!CL:0000766;4.52e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,2.42e-15,3;CL:0000766,3.24e-13,72;CL:0000094,1.13e-12,8;CL:0000511,8.64e-12,1;CL:0002625,8.64e-12,1;CL:0000216,8.64e-12,1;CL:0000860,9.31e-12,42;CL:0002057,9.31e-12,42;CL:0002174,1.63e-11,1;CL:0000501,1.63e-11,1;CL:0000763,3.27e-10,108;CL:0000049,3.27e-10,108;CL:0000473,3.34e-10,48;CL:0000234,3.34e-10,48;CL:0000081,2.31e-09,11;CL:0000839,3.30e-09,66;CL:0002194,5.06e-08,59;CL:0000576,5.06e-08,59;CL:0000040,5.06e-08,59;CL:0000559,5.06e-08,59;CL:0002009,9.67e-08,61;CL:0000557,5.39e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;1.30e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!7.26e-09!34;UBERON:0001869!8.31e-09!32;UBERON:0002020!1.38e-08!34;UBERON:0003528!1.38e-08!34;UBERON:0002791!2.47e-08!33;UBERON:0001950!3.38e-08!20;UBERON:0000956!3.55e-08!25;UBERON:0000203!3.55e-08!25;UBERON:0002619!4.63e-08!22;UBERON:0001049!6.71e-08!57;UBERON:0005068!6.71e-08!57;UBERON:0006241!6.71e-08!57;UBERON:0007135!6.71e-08!57;UBERON:0002780!1.64e-07!41;UBERON:0001890!1.64e-07!41;UBERON:0006240!1.64e-07!41;UBERON:0003080!3.79e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;1.13e-11;1!UBERON:0001343;1.13e-11;1!UBERON:0004910;1.13e-11;1!UBERON:0004813;1.13e-11;1!UBERON:0001950;3.73e-08;20!UBERON:0002619;1.85e-07;22!UBERON:0001871;6.58e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,8.64e-12,1;UBERON:0001343,8.64e-12,1;UBERON:0004910,8.64e-12,1;UBERON:0005154,8.64e-12,1;UBERON:0005295,8.64e-12,1;UBERON:0004813,8.64e-12,1;UBERON:0005297,8.64e-12,1;UBERON:0005294,8.64e-12,1;UBERON:0010141,8.64e-12,1;UBERON:0005891,8.64e-12,1;UBERON:0001950,3.73e-08,20;UBERON:0002619,1.85e-07,22;UBERON:0001871,5.51e-07,6 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0.136874425072884,0.251085279189606,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0.401088894940283,0.217010870715852,0,0,0,0.436194716338694,0,0,0.697287110717054,0,0.309706370895104,0.575384784644301,0.256160706529101,0.47296445977717,1.72372840368309,0.645484683583826,5.41705946377367,0.376484679085209,0,0,3.36692281607993,0.320929027076094,3.83602275479425,0.659702600373432,0.398927315243264,0.426224750532694,1.45104619314292,0.56738522469114,0.622822248995575,0.75374599577023,0.521482918420201,0.434377689410233,3.63239701580021,0.736555271975129,2.21523671208619,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0.205601498999509,0,0.32592226663359,0,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0,2.63560834872127,0,0,0,0.25326102332916,0,0,0.354668382198357,0,0,0.74000264525148,0,0,0.163461903113459,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,0,0,0,0.600182192168805,0,0,0,0,0,0,0.184099797284599,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0,0.10366105501537,0,0.72995471815166,0,0,0,0,0,0.354920400119532,0.505754070234305,0.241011029883482,0.661763836394364,0.217879444092406,0.237270619111097,0.269662616320329,0,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.176096868026452,0,0.144119953416961,0,0,0,0,0,0.102827492703324,0.300343057843917,0.571652865261156,0,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699810938274399,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0,0,0,0.773288812777695,0,0,2.24702107184155,5.9832291840805,0,0,0.500170521059677,0.271265023699736,0,0.535286966391485,0.157702415033935,0,0,0,0,0.664225598535437,0,0.260650843404249,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0.116210378459959,0,0,0.0920809889358963,0,0.182091168006717,0,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0,0.438519753291869,1.5686127061494,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0.107420244868274,0,0,0,0.165284915360978,0,0,0.2023155617111,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0,0.255897791311334,0,0,0,0,0.54907405947211,0,0,0,0,0,0.243713489631284,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0.569647187174163,0,0,0,0,0.79312517629427,0.106824071127473,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0,0,0,0.19538809540204,0,0,0.270455678475983,0,0,0.18714054040822,0,0.242721043499027,0,0,0,0,0.614321404198464,1.9882952955326,0.281338832821026,0,0.494411622680279,0.422250816255987,0.19924798825107,0,0.251932747854276,0.102268682502155,0,0,0,0.179021174675609,0,0,0,0,0,0.463840490809256,0,0.260427761085233,0,0,0,0,0,0,0,0,0.885741385813839,0,1.52581736317083,0.221158519862449,0,0,0,0,0.0769502585037971,0,0.46112780877612,0.359030577639089,0.217294743844016,0,0.0915975934018623,0.533034776018635,0,0.31396051279005,0.166211681900156,0,0.19606253431774,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0.611030144933625,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0.343972064943233,0.0967563312890851,0,0.0821154570532092,0.0969890164884194,0.353024506766001,0,0.137041924646751,0,0.316553979779393,0,0.0801588202515337,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0.273810757783986,0,1.28929632425987,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.196854963029498,0,0,0.272406812223151,0.321506296930038,0.137539436597234,0.415440338029185,0,0.77380195455795,0.0607495566580247,0,0.0788057072991982,0,0,0.35857467866569,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0,0,0,0,0,0.886068179966986,2.92863035764712,0.250381861413,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0.233713309847224,0.554805861502613,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0,0.214821114084977,0,0.796191777397232,0,0.343395705182793,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0.38582807654183,0.168942440653073,0,0,0,0.138258436151731,0,0,0,1.31043939538565,0,0,0,0,0,0,0.184105950251841,0.139879507719444,0,0,0,0,0.109209638192014,0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| |||
|short_description=p13@RAPGEF2 | |||
}} |
Revision as of 03:47, 22 January 2014
Short description: | p13@RAPGEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_13_at_RAPGEF2_5end |
Coexpression cluster: | NA |
Association with transcript: | -303bp_to_ENST00000502485_5end |
EntrezGene: | RAPGEF2 |
HGNC: | 16854 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 2.42e-15 | 3 |
myeloid leukocyte | 3.24e-13 | 72 |
granulocyte | 1.13e-12 | 8 |
androgen binding protein secreting cell | 8.64e-12 | 1 |
seminiferous tubule epithelial cell | 8.64e-12 | 1 |
Sertoli cell | 8.64e-12 | 1 |
classical monocyte | 9.31e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.31e-12 | 42 |
follicular cell of ovary | 1.63e-11 | 1 |
granulosa cell | 1.63e-11 | 1 |
myeloid cell | 3.27e-10 | 108 |
common myeloid progenitor | 3.27e-10 | 108 |
defensive cell | 3.34e-10 | 48 |
phagocyte | 3.34e-10 | 48 |
blood cell | 2.31e-09 | 11 |
myeloid lineage restricted progenitor cell | 3.30e-09 | 66 |
monopoietic cell | 5.06e-08 | 59 |
monocyte | 5.06e-08 | 59 |
monoblast | 5.06e-08 | 59 |
promonocyte | 5.06e-08 | 59 |
macrophage dendritic cell progenitor | 9.67e-08 | 61 |
granulocyte monocyte progenitor cell | 5.39e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 8.64e-12 | 1 |
seminiferous tubule of testis | 8.64e-12 | 1 |
epithelium of male gonad | 8.64e-12 | 1 |
epithelial cord | 8.64e-12 | 1 |
sex cord | 8.64e-12 | 1 |
seminiferous tubule epithelium | 8.64e-12 | 1 |
testis sex cord | 8.64e-12 | 1 |
genital ridge | 8.64e-12 | 1 |
primitive sex cord of indifferent gonad | 8.64e-12 | 1 |
coelomic epithelium | 8.64e-12 | 1 |
neocortex | 3.73e-08 | 20 |
regional part of cerebral cortex | 1.85e-07 | 22 |
temporal lobe | 5.51e-07 | 6 |