FFCP PHASE1:Mm9::chr2:180689381..180689413,-: Difference between revisions
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{{FFCP|EntrezGene=58237|HGNC=|MCL_coexpression_id=1536|UniProt=Q9JMG4,F6S2R0,A8WIR6|association_with_transcript=0bp_to_ENSMUST00000103053,ENSMUST00000108873,ENSMUST00000148905,NM_001141933,NM_021426,uc008okf.2,uc008okg.2,uc008okh.2_5end|description=CAGE_peak_2_at_Nkain4_5end|id=chr2:180689381..180689413,-|ontology_enrichment_celltype=CL:0000221!1.60e-18!44;CL:0000133!1.60e-18!44;CL:0002319!5.02e-18!43;CL:0000055!9.97e-18!50;CL:0000393!1.41e-15!39;CL:0000211!1.41e-15!39;CL:0000540!1.94e-15!33;CL:0000047!1.94e-15!33;CL:0000031!1.94e-15!33;CL:0000404!1.94e-15!33;CL:0000117!1.30e-11!23;CL:0000337!1.30e-11!23|ontology_enrichment_celltype_v019_2=CL:0000221,3.95e-19,44;CL:0000133,3.95e-19,44;CL:0002319,1.29e-18,43;CL:0000393,3.12e-16,39;CL:0000211,3.12e-16,39;CL:0000540,6.11e-16,33;CL:0000047,6.11e-16,33;CL:0000031,6.11e-16,33;CL:0000404,6.11e-16,33;CL:0000117,5.61e-12,23;CL:0000337,5.61e-12,23;CL:0002321,7.22e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.92e-29!73;UBERON:0005743!4.92e-29!73;UBERON:0000073!4.05e-27!75;UBERON:0001016!4.05e-27!75;UBERON:0004121!1.06e-20!102;UBERON:0000924!1.06e-20!102;UBERON:0006601!1.06e-20!102;UBERON:0002346!2.11e-18!71;UBERON:0003075!2.11e-18!71;UBERON:0007284!2.11e-18!71;UBERON:0001049!1.35e-17!52;UBERON:0005068!1.35e-17!52;UBERON:0006241!1.35e-17!52;UBERON:0007135!1.35e-17!52;UBERON:0000955!4.33e-16!50;UBERON:0006238!4.33e-16!50;UBERON:0002616!7.38e-16!49;UBERON:0000033!9.96e-16!63;UBERON:0000025!3.50e-14!114;UBERON:0004111!2.34e-13!122;UBERON:0002020!1.06e-12!34;UBERON:0003056!2.95e-12!49;UBERON:0003080!1.26e-11!40;UBERON:0002780!4.92e-11!39;UBERON:0001890!4.92e-11!39;UBERON:0006240!4.92e-11!39;UBERON:0002791!5.67e-10!29;UBERON:0003528!5.67e-10!29;UBERON:0001893!5.67e-10!29;UBERON:0000468!6.52e-09!333;UBERON:0007811!3.29e-08!86;UBERON:0000922!7.50e-08!328;UBERON:0003076!4.17e-07!12;UBERON:0003057!4.17e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.43e-30,73;UBERON:0001016,3.41e-28,75;UBERON:0004121,7.83e-22,95;UBERON:0000924,7.83e-22,95;UBERON:0006601,7.83e-22,95;UBERON:0002346,3.38e-20,64;UBERON:0003075,3.38e-20,64;UBERON:0007284,3.38e-20,64;UBERON:0000073,1.53e-19,54;UBERON:0010314,9.30e-19,92;UBERON:0001049,2.57e-18,52;UBERON:0005068,2.57e-18,52;UBERON:0006241,2.57e-18,52;UBERON:0007135,2.57e-18,52;UBERON:0010371,5.01e-16,73;UBERON:0000955,4.43e-15,47;UBERON:0006238,4.43e-15,47;UBERON:0002616,7.62e-15,46;UBERON:0000025,9.00e-14,114;UBERON:0002020,4.20e-13,34;UBERON:0004111,4.71e-13,122;UBERON:0003056,1.27e-12,49;UBERON:0003080,4.11e-12,40;UBERON:0002780,1.69e-11,39;UBERON:0001890,1.69e-11,39;UBERON:0006240,1.69e-11,39;UBERON:0003528,2.81e-10,29;UBERON:0002791,2.81e-10,29;UBERON:0001893,2.81e-10,29;UBERON:0003076,2.62e-07,12;UBERON:0003057,2.62e-07,12;UBERON:0002048,6.54e-07,14;UBERON:0000117,6.54e-07,14;UBERON:0000171,6.54e-07,14;UBERON:0000170,6.54e-07,14;UBERON:0005597,6.54e-07,14;UBERON:0000118,6.54e-07,14|phase1_expression=7.52699581392532,0.697950815278722,0.909998478779072,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,0,0,1.72269589234506,0.430761996159075,0.430942465371778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.1036885837722,37.1039568263423,6.9747765821439,73.5447863687157,29.2153709549798,8.12838876117546,8.36048566019419,14.278615005787,23.0004102983955,0,0,0,0,4.29800159908135,3.6097046459421,17.1968991730658,14.8117474196169,25.3532561402472,10.8430250262122,6.22506357277798,0,0,0,29.6604109413221,54.9432176609823,5.70292867696627,7.56033254657468,6.09942387919008,18.852964970651,17.4486147351775,6.73699395682247,7.57179221044067,10.1114066527102,11.0115880999389,13.5348578370299,18.279177457493,10.9465618816061,12.4423195299277,12.5019208933622,20.9387249251036,24.7615548413939,19.8637722109853,12.6690291753677,12.5287079103211,13.2343606535963,0,0.226714680320357,0.579728977403356,0.860423876981386,0,0,0,0,0.421333260395256,0.170430322578058,0,0,11.6900038414645,0,0,0,0,0,0,0.5709193985953,0,1.1875371125186,4.8575891494518,4.56698217468212,0.922461989024234,4.52167921657868,4.11560474974967,1.50799909595611,0.247194967734374,5.06097749219691,0,0.161766849947409,0.220841518460394,0,1.86391761218122,6.14839673724249,9.42510180660548,0.766371165625774,0,0,0,20.9706895166752,7.77751024791665,8.67015029578764,10.081810571152,8.95004100656157,14.5451631191692,12.1680947300818,11.6096874789361,1.36847667671102,1.26361379216837,0,2.99277018814219,9.65588838620586,9.36323074987816,9.94651797715719,10.0694018743965,10.249097622788,7.96464658757695,0.776110112217047,0.646703978798527,0.756424320671277,0.703804496655795,2.19195732427575,1.11218899690239,0.696504333044333,0.823128545631774,6.36909653819178,0,0,0,7.87077935634907,5.62862543954631,8.64297895012871,6.62885259638589,5.1158700254325,6.78775296704464,5.58081467400979,5.09719462659276,4.2035523252181,2.79751744852917,1.97000956894914,2.26992666728396,2.33919979880532,2.85415149878366,2.68412837520744,9.67333763394985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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:58237 | |||
|HGNC= | |||
|MCL_coexpression_id=1536 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9JMG4,uniprot:F6S2R0,uniprot:A8WIR6 | |||
|association_with_transcript=0bp_to_ENSMUST00000103053,ENSMUST00000108873,ENSMUST00000148905,NM_001141933,NM_021426,uc008okf.2,uc008okg.2,uc008okh.2_5end | |||
|cluster_id=chr2:180689381..180689413,- | |||
|description=CAGE_peak_2_at_Nkain4_5end | |||
|id=chr2:180689381..180689413,- | |||
|ontology_enrichment_celltype=CL:0000221!1.60e-18!44;CL:0000133!1.60e-18!44;CL:0002319!5.02e-18!43;CL:0000055!9.97e-18!50;CL:0000393!1.41e-15!39;CL:0000211!1.41e-15!39;CL:0000540!1.94e-15!33;CL:0000047!1.94e-15!33;CL:0000031!1.94e-15!33;CL:0000404!1.94e-15!33;CL:0000117!1.30e-11!23;CL:0000337!1.30e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.95e-19,44;CL:0000133,3.95e-19,44;CL:0002319,1.29e-18,43;CL:0000393,3.12e-16,39;CL:0000211,3.12e-16,39;CL:0000540,6.11e-16,33;CL:0000047,6.11e-16,33;CL:0000031,6.11e-16,33;CL:0000404,6.11e-16,33;CL:0000117,5.61e-12,23;CL:0000337,5.61e-12,23;CL:0002321,7.22e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.92e-29!73;UBERON:0005743!4.92e-29!73;UBERON:0000073!4.05e-27!75;UBERON:0001016!4.05e-27!75;UBERON:0004121!1.06e-20!102;UBERON:0000924!1.06e-20!102;UBERON:0006601!1.06e-20!102;UBERON:0002346!2.11e-18!71;UBERON:0003075!2.11e-18!71;UBERON:0007284!2.11e-18!71;UBERON:0001049!1.35e-17!52;UBERON:0005068!1.35e-17!52;UBERON:0006241!1.35e-17!52;UBERON:0007135!1.35e-17!52;UBERON:0000955!4.33e-16!50;UBERON:0006238!4.33e-16!50;UBERON:0002616!7.38e-16!49;UBERON:0000033!9.96e-16!63;UBERON:0000025!3.50e-14!114;UBERON:0004111!2.34e-13!122;UBERON:0002020!1.06e-12!34;UBERON:0003056!2.95e-12!49;UBERON:0003080!1.26e-11!40;UBERON:0002780!4.92e-11!39;UBERON:0001890!4.92e-11!39;UBERON:0006240!4.92e-11!39;UBERON:0002791!5.67e-10!29;UBERON:0003528!5.67e-10!29;UBERON:0001893!5.67e-10!29;UBERON:0000468!6.52e-09!333;UBERON:0007811!3.29e-08!86;UBERON:0000922!7.50e-08!328;UBERON:0003076!4.17e-07!12;UBERON:0003057!4.17e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.43e-30,73;UBERON:0001016,3.41e-28,75;UBERON:0004121,7.83e-22,95;UBERON:0000924,7.83e-22,95;UBERON:0006601,7.83e-22,95;UBERON:0002346,3.38e-20,64;UBERON:0003075,3.38e-20,64;UBERON:0007284,3.38e-20,64;UBERON:0000073,1.53e-19,54;UBERON:0010314,9.30e-19,92;UBERON:0001049,2.57e-18,52;UBERON:0005068,2.57e-18,52;UBERON:0006241,2.57e-18,52;UBERON:0007135,2.57e-18,52;UBERON:0010371,5.01e-16,73;UBERON:0000955,4.43e-15,47;UBERON:0006238,4.43e-15,47;UBERON:0002616,7.62e-15,46;UBERON:0000025,9.00e-14,114;UBERON:0002020,4.20e-13,34;UBERON:0004111,4.71e-13,122;UBERON:0003056,1.27e-12,49;UBERON:0003080,4.11e-12,40;UBERON:0002780,1.69e-11,39;UBERON:0001890,1.69e-11,39;UBERON:0006240,1.69e-11,39;UBERON:0003528,2.81e-10,29;UBERON:0002791,2.81e-10,29;UBERON:0001893,2.81e-10,29;UBERON:0003076,2.62e-07,12;UBERON:0003057,2.62e-07,12;UBERON:0002048,6.54e-07,14;UBERON:0000117,6.54e-07,14;UBERON:0000171,6.54e-07,14;UBERON:0000170,6.54e-07,14;UBERON:0005597,6.54e-07,14;UBERON:0000118,6.54e-07,14 | |||
|phase1_expression=7.52699581392532,0.697950815278722,0.909998478779072,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,0,0,1.72269589234506,0.430761996159075,0.430942465371778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.1036885837722,37.1039568263423,6.9747765821439,73.5447863687157,29.2153709549798,8.12838876117546,8.36048566019419,14.278615005787,23.0004102983955,0,0,0,0,4.29800159908135,3.6097046459421,17.1968991730658,14.8117474196169,25.3532561402472,10.8430250262122,6.22506357277798,0,0,0,29.6604109413221,54.9432176609823,5.70292867696627,7.56033254657468,6.09942387919008,18.852964970651,17.4486147351775,6.73699395682247,7.57179221044067,10.1114066527102,11.0115880999389,13.5348578370299,18.279177457493,10.9465618816061,12.4423195299277,12.5019208933622,20.9387249251036,24.7615548413939,19.8637722109853,12.6690291753677,12.5287079103211,13.2343606535963,0,0.226714680320357,0.579728977403356,0.860423876981386,0,0,0,0,0.421333260395256,0.170430322578058,0,0,11.6900038414645,0,0,0,0,0,0,0.5709193985953,0,1.1875371125186,4.8575891494518,4.56698217468212,0.922461989024234,4.52167921657868,4.11560474974967,1.50799909595611,0.247194967734374,5.06097749219691,0,0.161766849947409,0.220841518460394,0,1.86391761218122,6.14839673724249,9.42510180660548,0.766371165625774,0,0,0,20.9706895166752,7.77751024791665,8.67015029578764,10.081810571152,8.95004100656157,14.5451631191692,12.1680947300818,11.6096874789361,1.36847667671102,1.26361379216837,0,2.99277018814219,9.65588838620586,9.36323074987816,9.94651797715719,10.0694018743965,10.249097622788,7.96464658757695,0.776110112217047,0.646703978798527,0.756424320671277,0.703804496655795,2.19195732427575,1.11218899690239,0.696504333044333,0.823128545631774,6.36909653819178,0,0,0,7.87077935634907,5.62862543954631,8.64297895012871,6.62885259638589,5.1158700254325,6.78775296704464,5.58081467400979,5.09719462659276,4.2035523252181,2.79751744852917,1.97000956894914,2.26992666728396,2.33919979880532,2.85415149878366,2.68412837520744,9.67333763394985,6.07137213037778,0,0.793351699990633,5.54549451391608,7.66381017139447,4.12375876230699,4.03367049246685,4.22518283305254,3.61428689613862,2.37264530772256,3.29397909448022,2.5133520880027,2.98434708061726,2.33956904542944,0,0.864552199498777,0.398282546508734,11.1904061562318,4.34144347916969,6.76246414038483,5.09128319613286,2.32742984601151,2.94570443539338,2.02356918797623,0.147610147979602,0.627994911365499,0.493588655687202,0.296452627087149,1.16791574001266,1.17935397067922,0.224862112384854,1.01430060694251,0.964708639009667,1.52775511068852,0,0.648540907100142,0.823684239564244,0,1.48856379067401,0.312037673114561,1.01031551178845,0.717589654087649,0.482443521363367,6.09685527549795,25.012866353704,15.1557428091084,15.7862929770925,15.9589368836181,14.9080569123216,12.8543566078447,6.24427673144956,10.2462843669024,11.9590932410338,8.6105575075043,7.86543910635542,7.08008425650172,9.83613598354279,0,0,0,0,10.1146871692309,12.0728037189969,0,0,8.51872192423893,11.3227235846025,12.2791336707695,13.3822526853429,12.0311284004493,14.1538265394416,6.47697122679831,8.47541987942804,11.0680577825027,7.39039027770156,2.83880170416537,12.2865266530406,12.8680697889325,1.64970122972535,0,11.4106898992841,5.13950046840077,4.90373207365335,7.67784921490009,8.30074899448604,5.16856586336442,4.36240475373007,6.41695281092498,3.79244109522979,2.10837217149998,2.06271086496374,0,3.6012218806262,8.27895576209629,6.21577401591618,4.78818630834139,6.42127743367454,6.41741180348272,10.3518082698964,0,0.21183207086382,1.10264199027481,0.49465875882444,1.13025098687134,0.422190474497091,0.477489376012546,0.164140899745061,0.582961673259701,11.8672193286726,0.170870880797853,5.15967169908056,2.03713980106683,1.13021074202815,0,0,0,0,0,3.81868247206045,11.0717597753397,7.5228202836934,6.48032044930808,6.27264888043406,6.55087691238533,5.93403124093211,4.29797969771747,4.18809507174447,1.16653475962614,0,0.56369293868419,5.68162874967119,9.59659244651166,9.33365704051429,8.78286799648571,9.96841140395591,9.38857909166032,4.03633593016245,2.83120229949419,1.20792060413003,0.576060012515731,1.26404448251271,5.47358081283443,8.52500944468066,5.3267537420896,5.19177417435696,1.98681354781265,2.04332264183947,1.47689527174577,1.00966449948148,1.37172251979,1.00826185136841,0.584747284438515,0.962118416403295,1.05189211963412,0,0.665957860122194,0.0897138566094757,0.503653849092235,5.79568782096571,0.375364950902364,0.183151624267265,0.214368379079066,3.00943262421218,14.1187960654267,11.0478056761722,6.87474616127276,7.38968684077857,7.53590771747707,6.7985450765073,6.07520250208625,8.10578165803597,12.6879874515577,7.24864436452548,2.07574695168353,5.1873233542134,4.78054096111576,2.91728060481953,2.09613162627982,2.02227859295016,3.11145418922261,1.85431551515005,3.85103051510178,2.52697211763797,3.04175159868288,3.58390048633545,2.43467919421694,2.56100609619477,2.75690250986944,2.85776214769844,3.36064545240081,3.47236596834669,1.6483436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| |||
|short_description=p2@Nkain4 | |||
}} |
Revision as of 17:50, 4 August 2015
Short description: | p2@Nkain4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nkain4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1536 |
Association with transcript: | 0bp_to_ENSMUST00000103053, ENSMUST00000108873, ENSMUST00000148905, NM_001141933, NM_021426, uc008okf.2, uc008okg.2, uc008okh.2_5end |
EntrezGene: | 58237 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.95e-19 | 44 |
neurectodermal cell | 3.95e-19 | 44 |
neural cell | 1.29e-18 | 43 |
electrically responsive cell | 3.12e-16 | 39 |
electrically active cell | 3.12e-16 | 39 |
neuron | 6.11e-16 | 33 |
neuronal stem cell | 6.11e-16 | 33 |
neuroblast | 6.11e-16 | 33 |
electrically signaling cell | 6.11e-16 | 33 |
CNS neuron (sensu Vertebrata) | 5.61e-12 | 23 |
neuroblast (sensu Vertebrata) | 5.61e-12 | 23 |
embryonic cell | 7.22e-07 | 70 |