FFCP PHASE1:Hg19::chr7:2288927..2288952,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4521 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8048 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=7bp_to_ENST00000487426_5end | |||
|description=CAGE_peak_4_at_NUDT1_5end | |||
|id=chr7:2288927..2288952,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.73e-35!180;CL:0000048!5.95e-28!430;CL:0000034!9.92e-27!444;CL:0000723!1.03e-26!436;CL:0000144!1.30e-22!625;CL:0000057!1.48e-22!75;CL:0002371!2.13e-22!591;CL:0002320!4.03e-16!365;CL:0000680!1.55e-15!57;CL:0000056!1.55e-15!57;CL:0000355!1.55e-15!57;CL:0000012!2.83e-15!682;CL:0000183!6.52e-15!59;CL:0000187!7.15e-15!54;CL:0000134!1.89e-14!358;CL:0000219!3.97e-14!390;CL:0000548!5.20e-14!679;CL:0000004!5.20e-14!679;CL:0000255!5.20e-14!679;CL:0000222!2.45e-13!119;CL:0000359!5.45e-13!32;CL:0000192!1.40e-12!42;CL:0000514!1.40e-12!42;CL:0000393!1.39e-11!60;CL:0000211!1.39e-11!60;CL:0000003!3.32e-11!722;CL:0002620!6.92e-10!23;CL:0002334!2.09e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.94e-13;12!CL:0000359;1.28e-11;32!CL:0002559;2.44e-10;5!CL:0002540;1.03e-09;6!CL:0000057;6.00e-08;73!CL:0002570;1.68e-07;8!CL:0002092;2.84e-07;10!CL:0002539;5.82e-07;10!CL:0000134;6.21e-07;55!CL:0000346;7.65e-07;3!CL:1000428;7.65e-07;3!CL:0000192;8.89e-07;43!CL:0000034;9.68e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.21e-19,427;CL:0000034,2.38e-19,441;CL:0000723,9.81e-19,433;CL:0000057,1.77e-17,76;CL:0002334,7.80e-13,12;CL:0000359,1.14e-12,32;CL:0000134,1.26e-11,354;CL:0002320,1.36e-11,361;CL:0002559,2.15e-10,5;CL:0000219,9.70e-10,386;CL:0002540,3.23e-09,6;CL:0000192,3.59e-09,43;CL:0000514,3.59e-09,43;CL:0002570,5.39e-08,8;CL:0000680,5.72e-08,58;CL:0000056,5.72e-08,58;CL:0000355,5.72e-08,58;CL:0000187,8.54e-08,55;CL:0002539,1.97e-07,10;CL:0002092,7.08e-07,10;CL:0000346,7.36e-07,3;CL:1000428,7.36e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000514;8.89e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-18!83;UBERON:0002329!1.01e-18!83;UBERON:0003077!1.01e-18!83;UBERON:0003059!1.01e-18!83;UBERON:0007282!1.01e-18!83;UBERON:0009618!1.01e-18!83;UBERON:0007285!1.01e-18!83;UBERON:0004290!1.64e-17!70;UBERON:0002384!7.48e-16!375;UBERON:0000486!2.72e-14!82;UBERON:0002204!3.98e-14!167;UBERON:0001134!4.42e-14!61;UBERON:0002036!4.42e-14!61;UBERON:0003082!4.42e-14!61;UBERON:0002385!5.04e-13!63;UBERON:0001015!5.04e-13!63;UBERON:0000383!5.04e-13!63;UBERON:0004872!5.13e-12!84;UBERON:0002049!7.15e-11!79;UBERON:0007798!7.15e-11!79;UBERON:0001981!8.53e-11!60;UBERON:0007500!8.53e-11!60;UBERON:0004537!8.53e-11!60;UBERON:0006965!8.53e-11!60;UBERON:0000055!4.73e-10!69;UBERON:0001637!9.23e-10!42;UBERON:0003509!9.23e-10!42;UBERON:0004572!9.23e-10!42;UBERON:0002199!4.54e-09!45;UBERON:0002416!4.54e-09!45;UBERON:0004535!8.73e-09!110;UBERON:0001009!2.02e-08!113;UBERON:0002097!1.77e-07!40;UBERON:0005256!2.08e-07!143;UBERON:0004573!3.13e-07!33;UBERON:0004571!3.13e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0002073;2.44e-10;5!UBERON:0004573;3.26e-09;33!UBERON:0004571;3.26e-09;33!UBERON:0001013;1.39e-08;14!UBERON:0002199;2.74e-07;46!UBERON:0002416;2.74e-07;46!UBERON:0004237;5.82e-07;10!UBERON:0004695;5.82e-07;10!UBERON:0002111;5.82e-07;10!UBERON:0004178;5.82e-07;10!UBERON:0002097;6.24e-07;41!UBERON:0000412;7.65e-07;3!UBERON:0001992;7.65e-07;3!UBERON:0003102;8.61e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,6.43e-12,371;UBERON:0002199,1.10e-10,46;UBERON:0002416,1.10e-10,46;UBERON:0004573,1.47e-10,33;UBERON:0004571,1.47e-10,33;UBERON:0002073,2.15e-10,5;UBERON:0005086,2.15e-10,5;UBERON:0001637,1.28e-09,42;UBERON:0003509,1.28e-09,42;UBERON:0004572,1.28e-09,42;UBERON:0001013,6.46e-09,14;UBERON:0002329,6.98e-09,71;UBERON:0003059,6.98e-09,71;UBERON:0007282,6.98e-09,71;UBERON:0004290,6.98e-09,71;UBERON:0009618,6.98e-09,71;UBERON:0003077,1.15e-08,72;UBERON:0007285,1.15e-08,72;UBERON:0007524,1.86e-08,73;UBERON:0002097,1.57e-07,41;UBERON:0007503,1.69e-07,78;UBERON:0004237,1.97e-07,10;UBERON:0004695,1.97e-07,10;UBERON:0002111,1.97e-07,10;UBERON:0004178,1.97e-07,10;UBERON:0000486,2.23e-07,83;UBERON:0002204,2.99e-07,167;UBERON:0001134,4.16e-07,62;UBERON:0002036,4.16e-07,62;UBERON:0003082,4.16e-07,62;UBERON:0000412,7.36e-07,3;UBERON:0001992,7.36e-07,3 | |||
|phase1_expression=3.08853244759946,0.214100523890983,0.986680828671798,0,1.34088328328186,0.872338524100369,7.59899634504932,0,1.04474251279935,0,0,0,0,0.495065411840187,0.994192127183747,1.34465029290355,1.80808358407193,1.46062018077475,1.95173119516203,0,1.02000345622126,0.313454721478088,0,0,0.376627918784408,0.152826811495903,0,0.0787107813136792,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0.587200878669695,0,0.200544447470142,0,0,0,0.257575567634187,0.145398238779565,0.377875943688809,0,0,0,0,0,0,0.236482229888585,0,0,1.35426486594342,0,0,0,0.306083892370903,0,0,0,0.598390972864896,0,0,0.56738522469114,0,0.502497330513487,0,0.217188844705117,0,0,0.316462387440884,0,0.637812899895131,1.04829322754188,0.561643155732475,0.901061357049038,0.32145117339416,0.285012743741249,0.39783335439818,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,0.560508562981536,1.05353633910031,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0.657751618414705,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,2.50668955317945,2.462390822334,0.795285947051099,2.43317435151318,0,0.221729397462564,0,0.0654895377488563,0,0,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,0.258416759169329,1.06729878806013,0,0.805658634218294,0.760272105718513,0.24406205754817,0,0,0.17859945656816,0.22452937262617,0.450445921933289,1.53316637465883,0.949265659568129,0.366403487860815,0,0,0,2.98183171017191,0.506522046658319,0.794455084879313,0,1.41867352879343,1.12135520028461,1.06748995729705,0.98667019366864,0.311211035399766,0.404132016209064,0.490385709340376,0.605429710579726,1.15235184896,0.234321431833797,0.936480230490962,0.570471821544449,1.04614076386261,0.352303495931295,0.647491777472526,0.140450806702248,1.02077085627447,0.368502951935304,0.413303124703062,2.37600571456411,1.48360157567134,0,0.718618141816238,0,0.125118519871964,1.10825646193673,0.877955241761676,2.45190236639216,1.35214253015937,0.680593098960126,1.25572744982203,1.92201649936711,1.05965950579781,0.600182192168805,1.64884046781502,1.28820270022815,1.67505170698431,0.506328996723799,1.36411807225678,0.504867548488229,1.19664868234989,0.969876340912871,0.355009592516614,0.604512589365842,1.01736355386293,0,0,0,0,0,0,0,0,0,3.12899064659632,3.85944562915731,4.14404764057442,4.64367928031979,3.60939740834793,0,0,0,0,0.217879444092406,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,1.03993478527958,0,0,0.352226082707465,0.144366447761074,0,0.380508304469197,0,0,0,0,0.297262324577456,0,0.16798212819886,0.425325291727159,0,0,0,0.985326475791887,5.72314821085969,3.31724984865235,3.02651902175619,2.5248486685276,0.507983154337352,0.381988425558278,0,0,0.205654985406647,1.20137223137567,0.857479297891735,0,0.87192013766656,0.4400297149257,0.646358578788889,10.7296933755565,1.690605505112,1.06375246633948,1.04007436911366,1.02882949704857,1.41849132023278,1.3321108950805,0.57191197463259,2.17048642156577,1.64648067356154,0.977208552881205,0,0,0.301439377059586,0,0.199945982364114,3.64871341923571,0.502257091432126,0,2.63587341040741,0,1.42636905040718,1.30303176000821,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0.414415513436035,0.12269149171914,0.500170521059677,0.542530047399471,0.207970861530807,1.07057393278297,0.788512075169673,0.234282829985426,1.80567659836631,0,1.03473071292505,0.664225598535437,0.368738337083406,0.955719759148911,0.783204629850962,2.05886054286514,0,0,0,0.303127571446259,0,0,2.97729369382532,0.61384789315225,2.24528075546459,2.30650468660262,1.02341449813341,2.73451665944133,1.48418066444991,2.62156479464514,3.01854933032316,1.23190734020714,0.519254429183621,1.62694529843943,0,0.200506470303285,0,0.459257792658427,0.182091168006717,0.262248829918848,0,0,0,0,0,0,0.680374821106063,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0.183138929636687,0.165018999841176,0,0,1.6068392984416,0.386682873168488,0.308097234229289,0.460511024178389,0.413509717453592,0.966782203814463,1.16013355131383,0.511359764496605,0.534192213880424,0,0.384380134730212,0,0,2.32422774648643,0,0.6970372701606,1.23213432070436,0.532306030317022,1.73986598415015,0.9266210955196,1.00187420719394,0,0.632758849437452,0.762520775695299,1.02359116524534,0,1.59101623962968,0,0.359744915166629,0.54907405947211,0.471249609382746,1.61745985258653,3.17020642346017,1.68503382495592,0,1.94970791705028,6.33900880540533,0.409499734223957,0.707027159768564,3.39024349860728,1.10273068709225,3.3171948762061,0.438450885253763,0,0,1.21746226177622,0.6196469961995,0.845086807596724,0.573645408816206,0.589494246078727,0.7133421029625,0.709522128141196,1.47775344708365,0.987884678879706,0.379473173765715,0.349934720244983,0.0962221127255121,0,0,0,0,0,0,0.229723400206959,0.507447609232169,0,0,0,0,0.648473311192717,0,0,0.106824071127473,0,0,0,0,0,0,0.399158742865633,0.957526850661834,0,0,0.561594356226918,1.597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| |||
|short_description=p4@NUDT1 | |||
}} |
Revision as of 15:26, 22 January 2014
Short description: | p4@NUDT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NUDT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENST00000487426_5end |
EntrezGene: | NUDT1 |
HGNC: | 8048 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.21e-19 | 427 |
stem cell | 2.38e-19 | 441 |
somatic stem cell | 9.81e-19 | 433 |
fibroblast | 1.77e-17 | 76 |
preadipocyte | 7.80e-13 | 12 |
vascular associated smooth muscle cell | 1.14e-12 | 32 |
mesenchymal cell | 1.26e-11 | 354 |
connective tissue cell | 1.36e-11 | 361 |
hair follicle cell | 2.15e-10 | 5 |
motile cell | 9.70e-10 | 386 |
mesenchymal stem cell of the bone marrow | 3.23e-09 | 6 |
smooth muscle cell | 3.59e-09 | 43 |
smooth muscle myoblast | 3.59e-09 | 43 |
mesenchymal stem cell of adipose | 5.39e-08 | 8 |
muscle precursor cell | 5.72e-08 | 58 |
myoblast | 5.72e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.72e-08 | 58 |
muscle cell | 8.54e-08 | 55 |
aortic smooth muscle cell | 1.97e-07 | 10 |
bone marrow cell | 7.08e-07 | 10 |
hair follicle dermal papilla cell | 7.36e-07 | 3 |
stem cell of epidermis | 7.36e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 6.43e-12 | 371 |
integument | 1.10e-10 | 46 |
integumental system | 1.10e-10 | 46 |
systemic artery | 1.47e-10 | 33 |
systemic arterial system | 1.47e-10 | 33 |
hair follicle | 2.15e-10 | 5 |
hair follicle placode | 2.15e-10 | 5 |
artery | 1.28e-09 | 42 |
arterial blood vessel | 1.28e-09 | 42 |
arterial system | 1.28e-09 | 42 |
adipose tissue | 6.46e-09 | 14 |
somite | 6.98e-09 | 71 |
presomitic mesoderm | 6.98e-09 | 71 |
presumptive segmental plate | 6.98e-09 | 71 |
dermomyotome | 6.98e-09 | 71 |
trunk paraxial mesoderm | 6.98e-09 | 71 |
paraxial mesoderm | 1.15e-08 | 72 |
presumptive paraxial mesoderm | 1.15e-08 | 72 |
dense mesenchyme tissue | 1.86e-08 | 73 |
skin of body | 1.57e-07 | 41 |
epithelial vesicle | 1.69e-07 | 78 |
blood vessel smooth muscle | 1.97e-07 | 10 |
arterial system smooth muscle | 1.97e-07 | 10 |
artery smooth muscle tissue | 1.97e-07 | 10 |
aorta smooth muscle tissue | 1.97e-07 | 10 |
multilaminar epithelium | 2.23e-07 | 83 |
musculoskeletal system | 2.99e-07 | 167 |
skeletal muscle tissue | 4.16e-07 | 62 |
striated muscle tissue | 4.16e-07 | 62 |
myotome | 4.16e-07 | 62 |
dermal papilla | 7.36e-07 | 3 |
papillary layer of dermis | 7.36e-07 | 3 |