FFCP PHASE1:Mm9::chr4:62280716..62280753,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=50780|HGNC=|MCL_coexpression_id=94|UniProt=Q9DC04|association_with_transcript=10bp_to_NM_001081650,NM_134257,uc008tfe.1,uc012dfu.1_5end|description=CAGE_peak_3_at_Rgs3_5end|id=chr4:62280716..62280753,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005177!4.84e-10!85;UBERON:0002048!1.59e-09!14;UBERON:0000117!1.59e-09!14;UBERON:0000171!1.59e-09!14;UBERON:0000170!1.59e-09!14;UBERON:0005597!1.59e-09!14;UBERON:0000118!1.59e-09!14;UBERON:0009569!4.75e-09!66;UBERON:0000468!8.23e-09!333;UBERON:0005153!1.05e-08!17;UBERON:0003103!1.05e-07!43;UBERON:0007100!1.26e-07!18;UBERON:0000948!1.26e-07!18;UBERON:0005498!1.26e-07!18;UBERON:0004140!1.26e-07!18;UBERON:0009881!1.26e-07!18;UBERON:0004141!1.26e-07!18;UBERON:0003084!1.26e-07!18;UBERON:0007005!1.26e-07!18;UBERON:0004139!1.26e-07!18;UBERON:0004291!1.26e-07!18;UBERON:0005157!2.19e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0005177,3.21e-10,79;UBERON:0002048,5.62e-10,14;UBERON:0000117,5.62e-10,14;UBERON:0000171,5.62e-10,14;UBERON:0000170,5.62e-10,14;UBERON:0005597,5.62e-10,14;UBERON:0000118,5.62e-10,14;UBERON:0005153,1.03e-08,17;UBERON:0009569,1.03e-08,66;UBERON:0007100,1.37e-07,18;UBERON:0000948,1.37e-07,18;UBERON:0005498,1.37e-07,18;UBERON:0004140,1.37e-07,18;UBERON:0009881,1.37e-07,18;UBERON:0004141,1.37e-07,18;UBERON:0003084,1.37e-07,18;UBERON:0007005,1.37e-07,18;UBERON:0004139,1.37e-07,18;UBERON:0004291,1.37e-07,18;UBERON:0003103,1.41e-07,43;UBERON:0005178,9.62e-07,17;UBERON:0005181,9.62e-07,17;UBERON:0002224,9.62e-07,17;UBERON:0000915,9.62e-07,17;UBERON:0008947,9.62e-07,17;UBERON:0003258,9.62e-07,17|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0.281577444303333,0,0,0,0,0,0,0.607425802169478,0,0,0,0,4.59233766815777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,0.219686182734472,0,0,0,0,0,0,0.514518872071894,0.85960031981627,0,1.21389876515759,0,0.633831403506179,0,0,0.449949858640699,0,0,0,0.384218305321555,1.14058573539325,1.21505344498522,0.420649922702764,0.856952953211411,1.76694832761291,0.734944795289724,1.53352753629178,0.919218786610021,2.20231761998777,2.17068474744819,0.921639199537461,0.923204014111357,0.548925861614458,2.08365348222704,1.95428099300967,2.25105044012672,1.06958773443767,1.47314292736834,1.28134512719193,0.745597783301202,0.681535739998656,0.226714680320357,36.2330610877097,2.58127163094416,0,0,0.649776417447669,0.448026887097336,1.96622188184453,0,0,0,0.281686839553361,0,0,0,0,0,0,1.25602267690966,6.47344709117929,4.89859058913922,3.99016251562112,2.13125834818499,2.30615497256059,2.26083960828934,3.76283862834255,3.51866455723091,2.47194967734374,9.39895819979426,0,2.58826959915855,2.42925670306433,1.93950101254089,1.86391761218122,1.46390398505774,1.8850203613211,0.255457055208591,0,0.599902730993408,0,1.04853447583376,1.37250180845588,1.13088916901578,1.21677024134594,0.767146371990992,1.24672826735736,1.94689515681309,2.44414473240759,2.98576729464223,0.505445516867349,1.68353484709179,0.910843100738926,0.919608417733892,1.44049703844279,1.65775299619287,2.9255694635071,1.5373646434182,1.68663104207512,0.776110112217047,0.646703978798527,2.08016688184601,2.11141348996739,1.7535658594206,2.50242524303038,4.87553033131033,2.26360350048738,1.99034266818493,0,0,0.284163499395593,9.94203708170409,8.44293815931946,10.4435995647389,11.3637473080901,12.199382368339,7.55908853148153,6.0458825635106,6.9751084363901,10.2753501283109,7.07607354627966,10.8350526292203,14.592385718254,8.18719929581861,8.56245449635098,11.0049263383505,1.68231958851302,1.3377599609307,0,0.528901133327089,2.13288250535234,0.696710015581316,1.67527699718721,1.4117846723634,2.2237804384487,1.33157938278791,1.42358718463353,1.81168850196412,2.01068167040216,2.98434708061726,0.779856348476481,1.79763881730844,1.51296634912286,1.7922714592893,2.0863469104839,3.54170389090159,9.01661885384643,3.86937522906097,3.68509725618489,5.96154469067708,6.57659986092276,5.16635517928608,3.45397201251025,3.94870924549762,1.48226313543574,0.500535317148282,0.982794975566015,1.57403478669398,1.21716072833102,1.4470629585145,0.50925170356284,2.01387296215567,2.91843408195064,3.0201755450689,2.87536413054709,3.34926852901653,4.36852742360385,2.77836765741823,2.69096120282868,2.41221760681684,9.05290631816363,3.60033682363921,4.23708938749267,4.58311731593008,6.10194645550105,8.5428191295326,7.85544014923845,12.4885534628991,11.1920952315396,12.4020226203314,18.018388858296,15.7308782127108,10.8791538575514,19.6722719670856,0,0,1.47529281905711,4.13905119457099,1.60550589987792,2.22702204525186,0,6.05930225290495,0,0,0,0,0,0,0.404810701674894,0,0,1.28528526568723,3.97432238583152,3.20518086601059,3.25773918707152,4.78413356620353,3.98235415019888,1.94224508923985,0.604647113929502,2.07465587731488,3.2483208216885,3.68922177532713,6.20227903603731,2.54473610634254,2.49548164869305,1.58018378967908,2.10837217149998,1.03135543248187,3.74483566329167,1.8006109403131,2.97524972700335,2.35770738534752,2.30542303734956,3.92411398724555,2.79733335023606,3.95804433848979,0.704015124191131,1.69465656691056,0.882113592219848,1.48397627647332,4.03661066739764,2.41251699712623,1.90995750405018,1.47726809770555,1.7488850197791,2.22510362412612,1.70870880797853,3.714963623338,0.925972636848558,1.50694765603753,1.36694227721025,0.686334519619568,1.01987057996313,1.11961161858926,0.552799895217695,0,1.89801596148681,1.82987520414164,1.51207477150522,1.88179466413022,1.31017538247707,1.88810084938749,3.05817786183743,2.87931536182433,1.94422459937689,0,0,2.69129782879162,0.827292452285488,1.75006069509643,1.80823752868824,2.87225413334323,2.8165737274981,1.5624526181274,0.943734099831398,0.966336483304024,2.30424005006292,0,0.405450430580328,0.616265742988964,0.389762468933385,0.895133478337407,1.19208812868759,0.240390899039938,0.738447635872886,1.21159739937777,0.685861259894999,0.302478555410522,0.194915761479505,0.288635524920988,0.584384510907845,3.62768613784338,0,0,0,2.70465431645067,1.87682475451182,2.56412273974171,1.71494703263253,1.50471631210609,0.564751842617067,0.920650473014354,1.14579102687879,0.859265911718438,0,0.755393897389701,0,0,0.453142408984205,0,0.415149390336707,1.59609949360412,2.56100408631201,2.43106717068294,0.838452650511929,1.65459157605013,2.22246727801615,3.29656091582231,1.92551525755089,1.51618327058278,2.78827229879264,4.14977951049368,4.58843386602424,4.09760975391163,4.36509564062661,2.85776214769844,2.43357084484197,1.73618298417335,2.47251540481984,3.23837624295674,2.40008476669791,3.90446773550542,4.76872379894642,2.61623549938191,3.10560955370591,3.04612588410035,2.92684756596436,3.6829759601298,2.44447404922551,2.80571135828869,3.55905054372522,3.74317033027141,2.45538625901814,3.56354734727722,2.12197272079256,1.49886346762768,3.74290573512653,4.51229213501426,6.88637995447836,3.52946270591225,5.79669589051054|short_description=p3@Rgs3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:50780 | |||
|HGNC= | |||
|MCL_coexpression_id=94 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9DC04 | |||
|association_with_transcript=10bp_to_NM_001081650,NM_134257,uc008tfe.1,uc012dfu.1_5end | |||
|cluster_id=chr4:62280716..62280753,+ | |||
|description=CAGE_peak_3_at_Rgs3_5end | |||
|id=chr4:62280716..62280753,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005177!4.84e-10!85;UBERON:0002048!1.59e-09!14;UBERON:0000117!1.59e-09!14;UBERON:0000171!1.59e-09!14;UBERON:0000170!1.59e-09!14;UBERON:0005597!1.59e-09!14;UBERON:0000118!1.59e-09!14;UBERON:0009569!4.75e-09!66;UBERON:0000468!8.23e-09!333;UBERON:0005153!1.05e-08!17;UBERON:0003103!1.05e-07!43;UBERON:0007100!1.26e-07!18;UBERON:0000948!1.26e-07!18;UBERON:0005498!1.26e-07!18;UBERON:0004140!1.26e-07!18;UBERON:0009881!1.26e-07!18;UBERON:0004141!1.26e-07!18;UBERON:0003084!1.26e-07!18;UBERON:0007005!1.26e-07!18;UBERON:0004139!1.26e-07!18;UBERON:0004291!1.26e-07!18;UBERON:0005157!2.19e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,3.21e-10,79;UBERON:0002048,5.62e-10,14;UBERON:0000117,5.62e-10,14;UBERON:0000171,5.62e-10,14;UBERON:0000170,5.62e-10,14;UBERON:0005597,5.62e-10,14;UBERON:0000118,5.62e-10,14;UBERON:0005153,1.03e-08,17;UBERON:0009569,1.03e-08,66;UBERON:0007100,1.37e-07,18;UBERON:0000948,1.37e-07,18;UBERON:0005498,1.37e-07,18;UBERON:0004140,1.37e-07,18;UBERON:0009881,1.37e-07,18;UBERON:0004141,1.37e-07,18;UBERON:0003084,1.37e-07,18;UBERON:0007005,1.37e-07,18;UBERON:0004139,1.37e-07,18;UBERON:0004291,1.37e-07,18;UBERON:0003103,1.41e-07,43;UBERON:0005178,9.62e-07,17;UBERON:0005181,9.62e-07,17;UBERON:0002224,9.62e-07,17;UBERON:0000915,9.62e-07,17;UBERON:0008947,9.62e-07,17;UBERON:0003258,9.62e-07,17 | |||
|phase1_expression=1.12104192973356,0,0,0,0,0,0,0,0.281577444303333,0,0,0,0,0,0,0.607425802169478,0,0,0,0,4.59233766815777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,0.219686182734472,0,0,0,0,0,0,0.514518872071894,0.85960031981627,0,1.21389876515759,0,0.633831403506179,0,0,0.449949858640699,0,0,0,0.384218305321555,1.14058573539325,1.21505344498522,0.420649922702764,0.856952953211411,1.76694832761291,0.734944795289724,1.53352753629178,0.919218786610021,2.20231761998777,2.17068474744819,0.921639199537461,0.923204014111357,0.548925861614458,2.08365348222704,1.95428099300967,2.25105044012672,1.06958773443767,1.47314292736834,1.28134512719193,0.745597783301202,0.681535739998656,0.226714680320357,36.2330610877097,2.58127163094416,0,0,0.649776417447669,0.448026887097336,1.96622188184453,0,0,0,0.281686839553361,0,0,0,0,0,0,1.25602267690966,6.47344709117929,4.89859058913922,3.99016251562112,2.13125834818499,2.30615497256059,2.26083960828934,3.76283862834255,3.51866455723091,2.47194967734374,9.39895819979426,0,2.58826959915855,2.42925670306433,1.93950101254089,1.86391761218122,1.46390398505774,1.8850203613211,0.255457055208591,0,0.599902730993408,0,1.04853447583376,1.37250180845588,1.13088916901578,1.21677024134594,0.767146371990992,1.24672826735736,1.94689515681309,2.44414473240759,2.98576729464223,0.505445516867349,1.68353484709179,0.910843100738926,0.919608417733892,1.44049703844279,1.65775299619287,2.9255694635071,1.5373646434182,1.68663104207512,0.776110112217047,0.646703978798527,2.08016688184601,2.11141348996739,1.7535658594206,2.50242524303038,4.87553033131033,2.26360350048738,1.99034266818493,0,0,0.284163499395593,9.94203708170409,8.44293815931946,10.4435995647389,11.3637473080901,12.199382368339,7.55908853148153,6.0458825635106,6.9751084363901,10.2753501283109,7.07607354627966,10.8350526292203,14.592385718254,8.18719929581861,8.56245449635098,11.0049263383505,1.68231958851302,1.3377599609307,0,0.528901133327089,2.13288250535234,0.696710015581316,1.67527699718721,1.4117846723634,2.2237804384487,1.33157938278791,1.42358718463353,1.81168850196412,2.01068167040216,2.98434708061726,0.779856348476481,1.79763881730844,1.51296634912286,1.7922714592893,2.0863469104839,3.54170389090159,9.01661885384643,3.86937522906097,3.68509725618489,5.96154469067708,6.57659986092276,5.16635517928608,3.45397201251025,3.94870924549762,1.48226313543574,0.500535317148282,0.982794975566015,1.57403478669398,1.21716072833102,1.4470629585145,0.50925170356284,2.01387296215567,2.91843408195064,3.0201755450689,2.87536413054709,3.34926852901653,4.36852742360385,2.77836765741823,2.69096120282868,2.41221760681684,9.05290631816363,3.60033682363921,4.23708938749267,4.58311731593008,6.10194645550105,8.5428191295326,7.85544014923845,12.4885534628991,11.1920952315396,12.4020226203314,18.018388858296,15.7308782127108,10.8791538575514,19.6722719670856,0,0,1.47529281905711,4.13905119457099,1.60550589987792,2.22702204525186,0,6.05930225290495,0,0,0,0,0,0,0.404810701674894,0,0,1.28528526568723,3.97432238583152,3.20518086601059,3.25773918707152,4.78413356620353,3.98235415019888,1.94224508923985,0.604647113929502,2.07465587731488,3.2483208216885,3.68922177532713,6.20227903603731,2.54473610634254,2.49548164869305,1.58018378967908,2.10837217149998,1.03135543248187,3.74483566329167,1.8006109403131,2.97524972700335,2.35770738534752,2.30542303734956,3.92411398724555,2.79733335023606,3.95804433848979,0.704015124191131,1.69465656691056,0.882113592219848,1.48397627647332,4.03661066739764,2.41251699712623,1.90995750405018,1.47726809770555,1.7488850197791,2.22510362412612,1.70870880797853,3.714963623338,0.925972636848558,1.50694765603753,1.36694227721025,0.686334519619568,1.01987057996313,1.11961161858926,0.552799895217695,0,1.89801596148681,1.82987520414164,1.51207477150522,1.88179466413022,1.31017538247707,1.88810084938749,3.05817786183743,2.87931536182433,1.94422459937689,0,0,2.69129782879162,0.827292452285488,1.75006069509643,1.80823752868824,2.87225413334323,2.8165737274981,1.5624526181274,0.943734099831398,0.966336483304024,2.30424005006292,0,0.405450430580328,0.616265742988964,0.389762468933385,0.895133478337407,1.19208812868759,0.240390899039938,0.738447635872886,1.21159739937777,0.685861259894999,0.302478555410522,0.194915761479505,0.288635524920988,0.584384510907845,3.62768613784338,0,0,0,2.70465431645067,1.87682475451182,2.56412273974171,1.71494703263253,1.50471631210609,0.564751842617067,0.920650473014354,1.14579102687879,0.859265911718438,0,0.755393897389701,0,0,0.453142408984205,0,0.415149390336707,1.59609949360412,2.56100408631201,2.43106717068294,0.838452650511929,1.65459157605013,2.22246727801615,3.29656091582231,1.92551525755089,1.51618327058278,2.78827229879264,4.14977951049368,4.58843386602424,4.09760975391163,4.36509564062661,2.85776214769844,2.43357084484197,1.73618298417335,2.47251540481984,3.23837624295674,2.40008476669791,3.90446773550542,4.76872379894642,2.61623549938191,3.10560955370591,3.04612588410035,2.92684756596436,3.6829759601298,2.44447404922551,2.80571135828869,3.55905054372522,3.74317033027141,2.45538625901814,3.56354734727722,2.12197272079256,1.49886346762768,3.74290573512653,4.51229213501426,6.88637995447836,3.52946270591225,5.79669589051054 | |||
|short_description=p3@Rgs3 | |||
}} |
Revision as of 16:15, 5 August 2015
Short description: | p3@Rgs3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rgs3_5end |
Coexpression cluster: | MCL_coexpression_mm9:94 |
Association with transcript: | 10bp_to_NM_001081650, NM_134257, uc008tfe.1, uc012dfu.1_5end |
EntrezGene: | 50780 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trunk region element | 3.21e-10 | 79 |
lung | 5.62e-10 | 14 |
respiratory tube | 5.62e-10 | 14 |
respiration organ | 5.62e-10 | 14 |
pair of lungs | 5.62e-10 | 14 |
lung primordium | 5.62e-10 | 14 |
lung bud | 5.62e-10 | 14 |
epithelial bud | 1.03e-08 | 17 |
subdivision of trunk | 1.03e-08 | 66 |
primary circulatory organ | 1.37e-07 | 18 |
heart | 1.37e-07 | 18 |
primitive heart tube | 1.37e-07 | 18 |
primary heart field | 1.37e-07 | 18 |
anterior lateral plate mesoderm | 1.37e-07 | 18 |
heart tube | 1.37e-07 | 18 |
heart primordium | 1.37e-07 | 18 |
cardiac mesoderm | 1.37e-07 | 18 |
cardiogenic plate | 1.37e-07 | 18 |
heart rudiment | 1.37e-07 | 18 |
compound organ | 1.41e-07 | 43 |
thoracic cavity element | 9.62e-07 | 17 |
thoracic segment organ | 9.62e-07 | 17 |
thoracic cavity | 9.62e-07 | 17 |
thoracic segment of trunk | 9.62e-07 | 17 |
respiratory primordium | 9.62e-07 | 17 |
endoderm of foregut | 9.62e-07 | 17 |